Wall clock time and date at job start Mon Mar 30 2020 02:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47240 * 2 1 4 4 C 1.50696 * 109.47215 * 239.99994 * 2 1 3 5 5 H 1.08005 * 119.99990 * 240.00459 * 4 2 1 6 6 C 1.37881 * 120.00144 * 59.99947 * 4 2 1 7 7 N 1.31509 * 119.99894 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00087 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47230 * 89.99965 * 8 6 4 10 10 H 1.48501 * 109.47132 * 210.00054 * 8 6 4 11 11 H 1.48497 * 109.46892 * 329.99947 * 8 6 4 12 12 N 1.46906 * 109.47005 * 119.99870 * 2 1 3 13 13 C 1.46901 * 110.99793 * 58.95599 * 12 2 1 14 14 C 1.46898 * 110.99820 * 294.99916 * 12 2 1 15 15 N 1.46509 * 109.46894 * 204.99744 * 14 12 2 16 16 C 1.46759 * 124.35058 * 269.73023 * 15 14 12 17 17 C 1.54661 * 105.37989 * 162.85303 * 16 15 14 18 18 H 1.09002 * 110.81908 * 143.77662 * 17 16 15 19 19 C 1.50694 * 111.22385 * 267.57537 * 17 16 15 20 20 O 1.20822 * 120.00462 * 353.88510 * 19 17 16 21 21 O 1.34235 * 119.99592 * 173.88480 * 19 17 16 22 22 C 1.54627 * 101.68520 * 25.76916 * 17 16 15 23 23 C 1.34416 * 124.34313 * 90.02910 * 15 14 12 24 24 O 1.21282 * 124.94931 * 0.42404 * 23 15 14 25 25 H 1.08998 * 109.47262 * 300.00203 * 1 2 3 26 26 H 1.09001 * 109.47097 * 60.00065 * 1 2 3 27 27 H 1.08997 * 109.47240 * 180.02562 * 1 2 3 28 28 H 0.97000 * 120.00037 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.47401 * 59.99808 * 13 12 2 30 30 H 1.09001 * 109.46874 * 299.99821 * 13 12 2 31 31 H 1.09004 * 109.46970 * 179.97438 * 13 12 2 32 32 H 1.08994 * 109.47332 * 324.99716 * 14 12 2 33 33 H 1.08996 * 109.46821 * 85.00461 * 14 12 2 34 34 H 1.09004 * 110.24258 * 281.98382 * 16 15 14 35 35 H 1.08997 * 110.24785 * 43.97998 * 16 15 14 36 36 H 0.96705 * 116.99330 * 180.02562 * 21 19 17 37 37 H 1.09003 * 110.48152 * 216.31175 * 22 17 16 38 38 H 1.08998 * 110.49154 * 93.66491 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3428 -2.1617 -4.4119 10 1 2.4866 -0.1414 -5.1123 11 1 3.6293 -1.7583 -3.7121 12 7 2.0197 -0.6925 1.1995 13 6 1.5283 -2.0761 1.2460 14 6 1.6487 0.0392 2.4181 15 7 2.5925 -0.2872 3.4901 16 6 2.4172 -1.3925 4.4396 17 6 3.8130 -1.6210 5.0652 18 1 3.7262 -1.8920 6.1175 19 6 4.5875 -2.6659 4.3042 20 8 4.0560 -3.2794 3.4092 21 8 5.8680 -2.9150 4.6206 22 6 4.4603 -0.2260 4.9048 23 6 3.7273 0.3907 3.7338 24 8 4.1080 1.3564 3.1066 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 0.7087 1.1612 -3.4844 29 1 1.8762 -2.6151 0.3647 30 1 0.4384 -2.0742 1.2639 31 1 1.9060 -2.5658 2.1436 32 1 1.6785 1.1109 2.2216 33 1 0.6415 -0.2469 2.7211 34 1 1.6960 -1.1175 5.2094 35 1 2.0878 -2.2903 3.9167 36 1 6.3237 -3.5938 4.1040 37 1 5.5230 -0.3220 4.6818 38 1 4.3108 0.3699 5.8051 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833515240.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:28 Heat of formation + Delta-G solvation = -103.097897 kcal Electronic energy + Delta-G solvation = -21853.067974 eV Core-core repulsion = 18503.323150 eV Total energy + Delta-G solvation = -3349.744824 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.01707 -39.44831 -37.06128 -36.40857 -35.79121 -33.06368 -31.74621 -28.56928 -27.74498 -26.70793 -25.16477 -24.29426 -23.23744 -20.83180 -19.71980 -18.94196 -18.21022 -17.37003 -16.66627 -15.99114 -15.79265 -15.39768 -15.12849 -14.74619 -14.11135 -13.66450 -13.49344 -13.37667 -13.22023 -13.01798 -12.57543 -12.25952 -11.96714 -11.76759 -11.57549 -11.42390 -11.03193 -11.00270 -10.79512 -10.69901 -10.55817 -10.48237 -10.02245 -9.89144 -9.54082 -8.92352 -8.49185 -8.34960 -7.16989 -5.96833 -3.99937 2.07663 2.71696 2.88363 3.28907 3.34218 3.40550 3.46090 4.04486 4.24267 4.46357 4.59420 4.91299 5.10236 5.17608 5.33749 5.35835 5.45399 5.50859 5.58697 5.66193 5.99490 6.27025 6.38029 6.40661 6.67468 6.75024 6.82250 6.95513 7.11493 7.36354 7.50698 7.74270 7.76210 7.87011 8.15297 8.36980 8.48150 8.62755 9.05392 9.64559 11.10438 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.023041 B = 0.005462 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.928723 B = 5125.339551 C = 5540.830983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.172 4.172 2 C 0.216 3.784 3 H 0.042 0.958 4 C -0.497 4.497 5 H 0.062 0.938 6 C 0.058 3.942 7 N -0.895 5.895 8 Si 0.897 3.103 9 H -0.282 1.282 10 H -0.287 1.287 11 H -0.274 1.274 12 N -0.545 5.545 13 C 0.036 3.964 14 C 0.292 3.708 15 N -0.604 5.604 16 C 0.107 3.893 17 C -0.095 4.095 18 H 0.133 0.867 19 C 0.482 3.518 20 O -0.490 6.490 21 O -0.517 6.517 22 C -0.145 4.145 23 C 0.516 3.484 24 O -0.519 6.519 25 H 0.005 0.995 26 H 0.090 0.910 27 H 0.032 0.968 28 H 0.260 0.740 29 H 0.071 0.929 30 H 0.016 0.984 31 H 0.050 0.950 32 H 0.089 0.911 33 H 0.049 0.951 34 H 0.084 0.916 35 H 0.098 0.902 36 H 0.413 0.587 37 H 0.109 0.891 38 H 0.116 0.884 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.637 -6.356 18.761 20.139 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.110 3.890 3 H 0.060 0.940 4 C -0.536 4.536 5 H 0.080 0.920 6 C -0.143 4.143 7 N -0.534 5.534 8 Si 0.725 3.275 9 H -0.208 1.208 10 H -0.213 1.213 11 H -0.199 1.199 12 N -0.270 5.270 13 C -0.113 4.113 14 C 0.081 3.919 15 N -0.339 5.339 16 C -0.016 4.016 17 C -0.115 4.115 18 H 0.151 0.849 19 C 0.322 3.678 20 O -0.375 6.375 21 O -0.330 6.330 22 C -0.185 4.185 23 C 0.302 3.698 24 O -0.394 6.394 25 H 0.024 0.976 26 H 0.108 0.892 27 H 0.051 0.949 28 H 0.070 0.930 29 H 0.090 0.910 30 H 0.034 0.966 31 H 0.068 0.932 32 H 0.107 0.893 33 H 0.067 0.933 34 H 0.102 0.898 35 H 0.116 0.884 36 H 0.272 0.728 37 H 0.128 0.872 38 H 0.134 0.866 Dipole moment (debyes) X Y Z Total from point charges 3.854 -5.576 18.139 19.364 hybrid contribution -0.304 -1.040 -1.180 1.602 sum 3.550 -6.616 16.959 18.547 Atomic orbital electron populations 1.22447 1.00662 0.99424 1.00621 1.19303 0.89645 0.94637 0.85456 0.94039 1.21093 1.30474 1.12413 0.89590 0.91992 1.24916 0.95281 0.95131 0.98966 1.69878 1.37154 1.23020 1.23374 0.86508 0.79229 0.79233 0.82508 1.20841 1.21274 1.19921 1.61985 1.60377 1.02374 1.02270 1.22318 0.96511 0.90765 1.01659 1.21753 0.87895 0.98778 0.83496 1.48492 1.23730 1.30793 1.30933 1.22174 0.94074 0.92535 0.92847 1.21938 0.95059 0.93099 1.01403 0.84918 1.22968 0.80365 0.82533 0.81898 1.90800 1.69583 1.48350 1.28804 1.84465 1.26440 1.59456 1.62606 1.22392 1.02194 0.93848 1.00093 1.20631 0.81225 0.83419 0.84495 1.90756 1.68870 1.26854 1.52956 0.97559 0.89150 0.94916 0.93023 0.90994 0.96558 0.93186 0.89268 0.93341 0.89758 0.88381 0.72841 0.87243 0.86575 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.17 8.34 37.16 0.31 -3.86 16 2 C 0.22 5.62 2.27 -68.86 -0.16 5.47 16 3 H 0.04 1.22 7.93 -51.93 -0.41 0.80 16 4 C -0.50 -14.14 7.94 -34.44 -0.27 -14.41 16 5 H 0.06 1.79 6.75 -52.48 -0.35 1.44 16 6 C 0.06 1.64 5.30 -17.82 -0.09 1.55 16 7 N -0.89 -26.07 11.32 55.43 0.63 -25.44 16 8 Si 0.90 22.09 29.54 -169.99 -5.02 17.07 16 9 H -0.28 -6.82 7.11 56.52 0.40 -6.42 16 10 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 11 H -0.27 -6.77 7.11 56.52 0.40 -6.37 16 12 N -0.54 -12.31 4.84 -240.19 -1.16 -13.47 16 13 C 0.04 0.73 8.74 60.07 0.53 1.26 16 14 C 0.29 5.51 4.76 -63.31 -0.30 5.21 16 15 N -0.60 -9.58 3.13 -175.79 -0.55 -10.13 16 16 C 0.11 1.19 6.54 -3.03 -0.02 1.17 16 17 C -0.10 -0.86 3.65 -90.05 -0.33 -1.19 16 18 H 0.13 0.64 8.14 -51.93 -0.42 0.21 16 19 C 0.48 5.51 7.63 36.00 0.27 5.79 16 20 O -0.49 -7.56 15.79 -18.75 -0.30 -7.86 16 21 O -0.52 -4.53 13.21 -39.27 -0.52 -5.05 16 22 C -0.14 -1.51 6.40 -26.74 -0.17 -1.68 16 23 C 0.52 8.60 8.02 -10.86 -0.09 8.52 16 24 O -0.52 -11.26 17.59 5.56 0.10 -11.16 16 25 H 0.01 0.12 7.13 -51.93 -0.37 -0.25 16 26 H 0.09 2.43 6.07 -51.93 -0.32 2.11 16 27 H 0.03 0.76 6.38 -51.93 -0.33 0.43 16 28 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 29 H 0.07 1.63 6.53 -51.93 -0.34 1.29 16 30 H 0.02 0.32 6.27 -51.93 -0.33 -0.01 16 31 H 0.05 0.93 5.22 -51.93 -0.27 0.66 16 32 H 0.09 1.84 7.50 -51.93 -0.39 1.45 16 33 H 0.05 0.82 7.56 -51.93 -0.39 0.43 16 34 H 0.08 0.66 8.14 -51.93 -0.42 0.24 16 35 H 0.10 1.24 4.87 -51.93 -0.25 0.99 16 36 H 0.41 2.20 9.10 45.56 0.41 2.61 16 37 H 0.11 1.15 7.73 -51.93 -0.40 0.75 16 38 H 0.12 0.84 8.14 -51.93 -0.42 0.42 16 LS Contribution 308.10 15.07 4.64 4.64 Total: -1.00 -35.87 308.10 -6.65 -42.51 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -4.14 Total: 1.06 kcal Atomic # 6 Polarization: 8.15 SS G_CDS: -0.32 Total: 7.83 kcal Atomic # 7 Polarization: -47.96 SS G_CDS: -1.08 Total: -49.05 kcal Atomic # 8 Polarization: -23.35 SS G_CDS: -0.72 Total: -24.07 kcal Atomic # 14 Polarization: 22.09 SS G_CDS: -5.02 Total: 17.07 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -35.87 -6.65 -42.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833515240.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -60.587 kcal (2) G-P(sol) polarization free energy of solvation -35.865 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.452 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.646 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.511 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.098 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds