Wall clock time and date at job start Mon Mar 30 2020 02:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08997 * 109.47240 * 2 1 4 4 C 1.50696 * 109.47215 * 239.99994 * 2 1 3 5 5 H 1.08005 * 119.99990 * 240.00459 * 4 2 1 6 6 C 1.37881 * 120.00144 * 59.99947 * 4 2 1 7 7 N 1.31509 * 119.99894 * 359.97438 * 6 4 2 8 8 Si 1.86802 * 120.00087 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.47230 * 89.99965 * 8 6 4 10 10 H 1.48501 * 109.47132 * 210.00054 * 8 6 4 11 11 H 1.48497 * 109.46892 * 329.99947 * 8 6 4 12 12 N 1.46906 * 109.47005 * 119.99870 * 2 1 3 13 13 C 1.46901 * 110.99793 * 58.95599 * 12 2 1 14 14 C 1.46898 * 110.99820 * 294.99916 * 12 2 1 15 15 N 1.46509 * 109.46894 * 204.99744 * 14 12 2 16 16 C 1.46759 * 124.35058 * 269.73023 * 15 14 12 17 17 C 1.54661 * 105.37989 * 162.85303 * 16 15 14 18 18 H 1.09002 * 110.81908 * 143.77662 * 17 16 15 19 19 C 1.50694 * 111.22385 * 267.57537 * 17 16 15 20 20 O 1.20822 * 120.00462 * 353.88510 * 19 17 16 21 21 O 1.34235 * 119.99592 * 173.88480 * 19 17 16 22 22 C 1.54627 * 101.68520 * 25.76916 * 17 16 15 23 23 C 1.34416 * 124.34313 * 90.02910 * 15 14 12 24 24 O 1.21282 * 124.94931 * 0.42404 * 23 15 14 25 25 H 1.08998 * 109.47262 * 300.00203 * 1 2 3 26 26 H 1.09001 * 109.47097 * 60.00065 * 1 2 3 27 27 H 1.08997 * 109.47240 * 180.02562 * 1 2 3 28 28 H 0.97000 * 120.00037 * 179.97438 * 7 6 4 29 29 H 1.09002 * 109.47401 * 59.99808 * 13 12 2 30 30 H 1.09001 * 109.46874 * 299.99821 * 13 12 2 31 31 H 1.09004 * 109.46970 * 179.97438 * 13 12 2 32 32 H 1.08994 * 109.47332 * 324.99716 * 14 12 2 33 33 H 1.08996 * 109.46821 * 85.00461 * 14 12 2 34 34 H 1.09004 * 110.24258 * 281.98382 * 16 15 14 35 35 H 1.08997 * 110.24785 * 43.97998 * 16 15 14 36 36 H 0.96705 * 116.99330 * 180.02562 * 21 19 17 37 37 H 1.09003 * 110.48152 * 216.31175 * 22 17 16 38 38 H 1.08998 * 110.49154 * 93.66491 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0323 -0.7104 -1.2304 5 1 2.6532 -1.5886 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9428 0.8296 -2.6034 8 14 2.3214 -1.1204 -4.0079 9 1 1.3428 -2.1617 -4.4119 10 1 2.4866 -0.1414 -5.1123 11 1 3.6293 -1.7583 -3.7121 12 7 2.0197 -0.6925 1.1995 13 6 1.5283 -2.0761 1.2460 14 6 1.6487 0.0392 2.4181 15 7 2.5925 -0.2872 3.4901 16 6 2.4172 -1.3925 4.4396 17 6 3.8130 -1.6210 5.0652 18 1 3.7262 -1.8920 6.1175 19 6 4.5875 -2.6659 4.3042 20 8 4.0560 -3.2794 3.4092 21 8 5.8680 -2.9150 4.6206 22 6 4.4603 -0.2260 4.9048 23 6 3.7273 0.3907 3.7338 24 8 4.1080 1.3564 3.1066 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 0.7087 1.1612 -3.4844 29 1 1.8762 -2.6151 0.3647 30 1 0.4384 -2.0742 1.2639 31 1 1.9060 -2.5658 2.1436 32 1 1.6785 1.1109 2.2216 33 1 0.6415 -0.2469 2.7211 34 1 1.6960 -1.1175 5.2094 35 1 2.0878 -2.2903 3.9167 36 1 6.3237 -3.5938 4.1040 37 1 5.5230 -0.3220 4.6818 38 1 4.3108 0.3699 5.8051 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833515240.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:28 Heat of formation + Delta-G solvation = -132.061701 kcal Electronic energy + Delta-G solvation = -21854.323939 eV Core-core repulsion = 18503.323150 eV Total energy + Delta-G solvation = -3351.000789 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.00875 -40.53538 -38.82309 -37.44173 -36.88243 -34.91794 -33.18201 -30.47302 -28.73180 -28.21721 -27.23629 -25.50587 -24.73688 -21.68078 -21.48937 -20.33865 -19.06113 -18.36248 -18.28723 -17.60933 -17.10484 -16.79450 -16.43207 -16.23619 -15.68610 -15.22521 -15.11538 -14.58776 -14.37661 -14.21402 -14.03217 -13.59790 -13.29342 -13.06137 -12.85903 -12.84588 -12.69890 -12.67005 -12.46384 -12.43983 -12.26029 -12.05845 -11.83506 -11.45382 -11.01596 -10.86621 -10.54006 -9.83215 -8.92783 -8.14900 -6.26222 1.23561 1.37100 1.38670 1.49238 1.55961 2.04036 2.14740 2.39826 3.13448 3.21781 3.32758 3.48232 3.82447 4.08168 4.21805 4.35391 4.44217 4.48011 4.60554 4.65245 4.68601 4.81501 4.84115 4.85970 4.91495 5.05652 5.20927 5.46754 5.51166 5.65275 5.68274 5.77021 6.10071 6.22515 6.47846 6.65732 6.85957 7.01450 7.20325 7.42779 8.91146 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.023041 B = 0.005462 C = 0.005052 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1214.928723 B = 5125.339551 C = 5540.830983 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.222 3.778 3 H -0.004 1.004 4 C -0.517 4.517 5 H 0.049 0.951 6 C 0.012 3.988 7 N -0.918 5.918 8 Si 0.961 3.039 9 H -0.270 1.270 10 H -0.281 1.281 11 H -0.276 1.276 12 N -0.565 5.565 13 C 0.048 3.952 14 C 0.295 3.705 15 N -0.608 5.608 16 C 0.100 3.900 17 C -0.082 4.082 18 H 0.193 0.807 19 C 0.479 3.521 20 O -0.540 6.540 21 O -0.509 6.509 22 C -0.127 4.127 23 C 0.496 3.504 24 O -0.587 6.587 25 H 0.030 0.970 26 H 0.062 0.938 27 H 0.038 0.962 28 H 0.263 0.737 29 H 0.044 0.956 30 H 0.026 0.974 31 H 0.072 0.928 32 H 0.060 0.940 33 H 0.075 0.925 34 H 0.131 0.869 35 H 0.084 0.916 36 H 0.426 0.574 37 H 0.110 0.890 38 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.703 -7.861 21.349 23.049 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C 0.115 3.885 3 H 0.013 0.987 4 C -0.556 4.556 5 H 0.068 0.932 6 C -0.187 4.187 7 N -0.558 5.558 8 Si 0.786 3.214 9 H -0.195 1.195 10 H -0.206 1.206 11 H -0.201 1.201 12 N -0.290 5.290 13 C -0.099 4.099 14 C 0.083 3.917 15 N -0.342 5.342 16 C -0.022 4.022 17 C -0.100 4.100 18 H 0.210 0.790 19 C 0.322 3.678 20 O -0.430 6.430 21 O -0.322 6.322 22 C -0.166 4.166 23 C 0.285 3.715 24 O -0.467 6.467 25 H 0.049 0.951 26 H 0.081 0.919 27 H 0.057 0.943 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.044 0.956 31 H 0.091 0.909 32 H 0.078 0.922 33 H 0.093 0.907 34 H 0.149 0.851 35 H 0.102 0.898 36 H 0.288 0.712 37 H 0.129 0.871 38 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 3.930 -7.127 20.790 22.326 hybrid contribution -0.273 -0.579 -1.918 2.022 sum 3.657 -7.706 18.872 20.710 Atomic orbital electron populations 1.22191 0.99187 0.99630 1.00424 1.18987 0.90633 0.92252 0.86635 0.98650 1.21321 1.30775 1.12364 0.91119 0.93244 1.25692 0.95386 0.95821 1.01795 1.70004 1.37735 1.23967 1.24112 0.85521 0.78639 0.78363 0.78873 1.19525 1.20630 1.20141 1.61847 1.61355 1.03303 1.02523 1.22199 0.96960 0.89367 1.01406 1.21557 0.90041 0.96887 0.83187 1.48584 1.23071 1.32062 1.30459 1.22558 0.96672 0.90236 0.92725 1.22137 0.92729 0.91236 1.03925 0.78958 1.23579 0.80825 0.82277 0.81120 1.90792 1.70667 1.50493 1.31003 1.84439 1.25430 1.59812 1.62517 1.22380 1.01139 0.94561 0.98552 1.21854 0.81419 0.82608 0.85580 1.90714 1.70386 1.29872 1.55697 0.95084 0.91895 0.94263 0.92829 0.93733 0.95563 0.90939 0.92198 0.90700 0.85105 0.89824 0.71231 0.87145 0.82174 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.63 8.34 71.98 0.60 -7.03 16 2 C 0.22 12.07 2.27 44.17 0.10 12.17 16 3 H 0.00 -0.27 7.93 -2.39 -0.02 -0.29 16 4 C -0.52 -30.45 7.94 25.60 0.20 -30.25 16 5 H 0.05 2.97 6.75 -2.91 -0.02 2.95 16 6 C 0.01 0.68 5.30 84.66 0.45 1.13 16 7 N -0.92 -54.89 11.32 21.45 0.24 -54.65 16 8 Si 0.96 46.06 29.54 68.60 2.03 48.09 16 9 H -0.27 -12.36 7.11 99.48 0.71 -11.65 16 10 H -0.28 -13.11 7.11 99.48 0.71 -12.41 16 11 H -0.28 -13.24 7.11 99.48 0.71 -12.53 16 12 N -0.56 -26.13 4.84 -913.83 -4.42 -30.55 16 13 C 0.05 1.99 8.74 127.69 1.12 3.11 16 14 C 0.30 11.21 4.76 170.80 0.81 12.02 16 15 N -0.61 -18.51 3.13 -828.68 -2.59 -21.10 16 16 C 0.10 1.84 6.54 86.90 0.57 2.41 16 17 C -0.08 -1.09 3.65 -10.42 -0.04 -1.12 16 18 H 0.19 0.39 8.14 -2.39 -0.02 0.37 16 19 C 0.48 9.64 7.63 71.23 0.54 10.18 16 20 O -0.54 -16.01 15.79 21.98 0.35 -15.66 16 21 O -0.51 -7.42 13.21 -51.47 -0.68 -8.10 16 22 C -0.13 -2.17 6.40 30.59 0.20 -1.98 16 23 C 0.50 16.19 8.02 87.90 0.71 16.89 16 24 O -0.59 -26.40 17.59 -3.04 -0.05 -26.45 16 25 H 0.03 1.32 7.13 -2.39 -0.02 1.30 16 26 H 0.06 3.46 6.07 -2.39 -0.01 3.45 16 27 H 0.04 1.83 6.38 -2.39 -0.02 1.82 16 28 H 0.26 14.85 8.31 -92.71 -0.77 14.08 16 29 H 0.04 2.05 6.53 -2.39 -0.02 2.03 16 30 H 0.03 1.01 6.27 -2.39 -0.01 0.99 16 31 H 0.07 2.64 5.22 -2.38 -0.01 2.62 16 32 H 0.06 2.60 7.50 -2.39 -0.02 2.58 16 33 H 0.08 2.42 7.56 -2.39 -0.02 2.40 16 34 H 0.13 1.29 8.14 -2.38 -0.02 1.27 16 35 H 0.08 1.87 4.87 -2.39 -0.01 1.86 16 36 H 0.43 3.65 9.10 -74.05 -0.67 2.97 16 37 H 0.11 1.97 7.73 -2.39 -0.02 1.95 16 38 H 0.16 1.42 8.14 -2.39 -0.02 1.40 16 Total: -1.00 -84.27 308.10 0.55 -83.72 By element: Atomic # 1 Polarization: 6.75 SS G_CDS: 0.42 Total: 7.17 kcal Atomic # 6 Polarization: 12.27 SS G_CDS: 5.26 Total: 17.53 kcal Atomic # 7 Polarization: -99.53 SS G_CDS: -6.77 Total: -106.30 kcal Atomic # 8 Polarization: -49.83 SS G_CDS: -0.39 Total: -50.21 kcal Atomic # 14 Polarization: 46.06 SS G_CDS: 2.03 Total: 48.09 kcal Total: -84.27 0.55 -83.72 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833515240.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.341 kcal (2) G-P(sol) polarization free energy of solvation -84.271 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.612 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.550 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -83.721 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.062 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds