Wall clock time and date at job start Mon Mar 30 2020 02:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47515 * 2 1 4 4 C 1.50707 * 109.46898 * 119.99464 * 2 1 3 5 5 H 1.07994 * 119.99946 * 120.00052 * 4 2 1 6 6 C 1.37878 * 119.99668 * 300.00123 * 4 2 1 7 7 N 1.31507 * 120.00346 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99699 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46930 * 60.00114 * 8 6 4 10 10 H 1.48495 * 109.47174 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47139 * 300.00349 * 8 6 4 12 12 N 1.46898 * 109.47397 * 239.99269 * 2 1 3 13 13 C 1.46895 * 111.00140 * 306.04986 * 12 2 1 14 14 C 1.46902 * 110.99888 * 70.00406 * 12 2 1 15 15 N 1.46494 * 109.47194 * 154.99793 * 14 12 2 16 16 C 1.46765 * 124.35470 * 270.00000 * 15 14 12 17 17 C 1.54831 * 105.49704 * 197.01816 * 16 15 14 18 18 H 1.08999 * 111.07622 * 216.48807 * 17 16 15 19 19 C 1.50698 * 111.01133 * 92.61336 * 17 16 15 20 20 O 1.20815 * 120.00389 * 6.34035 * 19 17 16 21 21 O 1.34235 * 119.99448 * 186.33795 * 19 17 16 22 22 C 1.54631 * 101.60220 * 334.56264 * 17 16 15 23 23 C 1.34418 * 124.34952 * 89.97619 * 15 14 12 24 24 O 1.21284 * 124.94191 * 359.57303 * 23 15 14 25 25 H 1.08993 * 109.47470 * 300.00875 * 1 2 3 26 26 H 1.09005 * 109.46539 * 60.00646 * 1 2 3 27 27 H 1.08996 * 109.47206 * 179.97438 * 1 2 3 28 28 H 0.97004 * 120.00171 * 180.02562 * 7 6 4 29 29 H 1.09003 * 109.47266 * 183.95417 * 13 12 2 30 30 H 1.09007 * 109.47006 * 303.95251 * 13 12 2 31 31 H 1.08999 * 109.47111 * 63.95187 * 13 12 2 32 32 H 1.09002 * 109.46850 * 34.99902 * 14 12 2 33 33 H 1.09001 * 109.47256 * 274.99980 * 14 12 2 34 34 H 1.09001 * 110.23936 * 315.99466 * 16 15 14 35 35 H 1.09002 * 110.24650 * 77.98882 * 16 15 14 36 36 H 0.96701 * 116.99461 * 180.02562 * 21 19 17 37 37 H 1.09002 * 110.48855 * 266.08223 * 22 17 16 38 38 H 1.08998 * 110.48570 * 143.57284 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1316 6 6 1.6991 -0.2391 2.4828 7 7 0.9426 0.8298 2.6033 8 14 2.3211 -1.1200 4.0081 9 1 3.8061 -1.1205 4.0084 10 1 1.8257 -0.4202 5.2205 11 1 1.8256 -2.5199 4.0080 12 7 2.0197 -0.6926 -1.1993 13 6 1.4344 -2.0355 -1.3076 14 6 1.7531 0.0970 -2.4090 15 7 2.7158 -0.2666 -3.4516 16 6 4.0144 0.3893 -3.6450 17 6 4.4677 -0.0033 -5.0724 18 1 5.5465 -0.1538 -5.1136 19 6 4.0300 1.0273 -6.0810 20 8 3.5114 2.0535 -5.7100 21 8 4.2164 0.8051 -7.3916 22 6 3.7146 -1.3375 -5.2819 23 6 2.5235 -1.2443 -4.3539 24 8 1.5388 -1.9496 -4.4146 25 1 -0.3634 0.5139 0.8898 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 0.7085 1.1616 3.4843 29 1 1.8665 -2.5523 -2.1646 30 1 1.6466 -2.5988 -0.3988 31 1 0.3556 -1.9521 -1.4397 32 1 1.8501 1.1581 -2.1790 33 1 0.7419 -0.1075 -2.7609 34 1 3.9055 1.4712 -3.5685 35 1 4.7325 0.0288 -2.9084 36 1 3.9196 1.4953 -8.0004 37 1 4.3480 -2.1806 -5.0062 38 1 3.3854 -1.4313 -6.3168 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833515243.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:31 Heat of formation + Delta-G solvation = -107.045228 kcal Electronic energy + Delta-G solvation = -21522.305295 eV Core-core repulsion = 18172.389302 eV Total energy + Delta-G solvation = -3349.915993 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.11903 -39.60441 -36.99925 -36.57852 -35.92562 -33.12491 -31.79762 -28.54747 -27.79968 -26.55125 -25.22039 -24.66628 -23.04583 -20.91853 -19.79850 -18.98004 -18.29310 -17.43667 -16.82718 -16.12380 -15.72112 -15.49930 -15.23797 -14.82198 -14.11407 -13.76896 -13.52729 -13.40993 -13.18252 -12.87079 -12.63326 -12.41747 -12.03413 -11.77993 -11.70785 -11.51597 -11.08934 -10.98867 -10.78819 -10.72870 -10.67233 -10.56156 -10.04971 -9.96136 -9.63465 -8.98485 -8.56136 -8.39580 -7.25552 -6.02062 -4.05987 1.90743 2.62875 2.76317 3.22123 3.32491 3.36779 3.39918 4.02850 4.21663 4.41224 4.56321 4.90435 5.04993 5.10067 5.30058 5.38595 5.48313 5.61073 5.67479 5.76019 5.95614 6.21005 6.30545 6.46598 6.62689 6.68479 6.85775 6.93069 7.07952 7.32607 7.43126 7.59733 7.70449 7.81404 8.07008 8.28533 8.39870 8.55338 8.99237 9.58981 11.04849 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.031628 B = 0.004413 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.085315 B = 6342.866461 C = 6510.274719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.173 4.173 2 C 0.216 3.784 3 H 0.040 0.960 4 C -0.499 4.499 5 H 0.062 0.938 6 C 0.059 3.941 7 N -0.895 5.895 8 Si 0.898 3.102 9 H -0.277 1.277 10 H -0.288 1.288 11 H -0.278 1.278 12 N -0.548 5.548 13 C 0.040 3.960 14 C 0.289 3.711 15 N -0.598 5.598 16 C 0.116 3.884 17 C -0.098 4.098 18 H 0.137 0.863 19 C 0.486 3.514 20 O -0.502 6.502 21 O -0.515 6.515 22 C -0.144 4.144 23 C 0.511 3.489 24 O -0.531 6.531 25 H 0.090 0.910 26 H 0.005 0.995 27 H 0.033 0.967 28 H 0.261 0.739 29 H 0.046 0.954 30 H 0.070 0.930 31 H 0.019 0.981 32 H 0.086 0.914 33 H 0.055 0.945 34 H 0.096 0.904 35 H 0.094 0.906 36 H 0.412 0.588 37 H 0.119 0.881 38 H 0.107 0.893 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.191 -0.210 -16.816 18.706 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.232 4.232 2 C 0.110 3.890 3 H 0.057 0.943 4 C -0.537 4.537 5 H 0.080 0.920 6 C -0.142 4.142 7 N -0.534 5.534 8 Si 0.726 3.274 9 H -0.203 1.203 10 H -0.214 1.214 11 H -0.204 1.204 12 N -0.274 5.274 13 C -0.108 4.108 14 C 0.078 3.922 15 N -0.332 5.332 16 C -0.007 4.007 17 C -0.118 4.118 18 H 0.155 0.845 19 C 0.327 3.673 20 O -0.389 6.389 21 O -0.327 6.327 22 C -0.184 4.184 23 C 0.297 3.703 24 O -0.408 6.408 25 H 0.108 0.892 26 H 0.024 0.976 27 H 0.052 0.948 28 H 0.071 0.929 29 H 0.065 0.935 30 H 0.089 0.911 31 H 0.037 0.963 32 H 0.104 0.896 33 H 0.072 0.928 34 H 0.114 0.886 35 H 0.112 0.888 36 H 0.271 0.729 37 H 0.137 0.863 38 H 0.125 0.875 Dipole moment (debyes) X Y Z Total from point charges 8.011 -0.490 -16.195 18.075 hybrid contribution -0.677 0.189 0.421 0.819 sum 7.334 -0.302 -15.774 17.398 Atomic orbital electron populations 1.22444 1.00541 0.99700 1.00545 1.19308 0.89901 0.94296 0.85535 0.94257 1.21029 1.30687 1.12515 0.89489 0.92009 1.24917 0.95202 0.95130 0.98979 1.69868 1.36915 1.23037 1.23573 0.86562 0.79158 0.79627 0.82046 1.20261 1.21405 1.20377 1.62063 1.59722 1.03177 1.02436 1.22217 0.96419 0.91085 1.01068 1.21799 0.89003 0.97225 0.84126 1.48448 1.18882 1.34987 1.30890 1.22106 0.86009 1.00122 0.92512 1.22059 1.03564 0.93296 0.92877 0.84526 1.23117 0.75066 0.86816 0.82260 1.90758 1.39518 1.28089 1.80524 1.84502 1.77900 1.52083 1.18210 1.22375 0.96966 0.96950 1.02145 1.20701 0.87756 0.79756 0.82048 1.90727 1.31936 1.44833 1.73284 0.89187 0.97571 0.94760 0.92911 0.93524 0.91146 0.96252 0.89565 0.92758 0.88583 0.88825 0.72935 0.86269 0.87459 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.20 8.26 37.16 0.31 -3.90 16 2 C 0.22 5.34 2.27 -68.86 -0.16 5.19 16 3 H 0.04 1.05 7.80 -51.93 -0.40 0.64 16 4 C -0.50 -13.47 7.91 -34.44 -0.27 -13.74 16 5 H 0.06 1.68 7.12 -52.49 -0.37 1.31 16 6 C 0.06 1.60 5.30 -17.82 -0.09 1.51 16 7 N -0.89 -25.16 11.32 55.43 0.63 -24.54 16 8 Si 0.90 21.20 29.54 -169.99 -5.02 16.18 16 9 H -0.28 -6.48 7.11 56.52 0.40 -6.08 16 10 H -0.29 -6.77 7.11 56.52 0.40 -6.37 16 11 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 12 N -0.55 -11.85 4.80 -240.19 -1.15 -13.00 16 13 C 0.04 0.86 8.43 60.06 0.51 1.37 16 14 C 0.29 5.48 4.98 -63.32 -0.32 5.16 16 15 N -0.60 -9.47 3.15 -175.68 -0.55 -10.02 16 16 C 0.12 1.38 6.74 -2.93 -0.02 1.36 16 17 C -0.10 -0.86 3.67 -89.95 -0.33 -1.19 16 18 H 0.14 0.70 8.14 -51.93 -0.42 0.28 16 19 C 0.49 4.84 7.62 36.00 0.27 5.11 16 20 O -0.50 -6.78 16.28 -18.74 -0.31 -7.09 16 21 O -0.51 -3.67 13.21 -39.27 -0.52 -4.19 16 22 C -0.14 -1.44 6.39 -26.74 -0.17 -1.61 16 23 C 0.51 8.04 7.30 -10.86 -0.08 7.96 16 24 O -0.53 -10.42 16.27 5.55 0.09 -10.33 16 25 H 0.09 2.40 6.07 -51.93 -0.32 2.08 16 26 H 0.01 0.12 7.31 -51.93 -0.38 -0.26 16 27 H 0.03 0.82 6.41 -51.93 -0.33 0.49 16 28 H 0.26 7.05 8.31 -40.82 -0.34 6.71 16 29 H 0.05 0.96 6.13 -51.93 -0.32 0.64 16 30 H 0.07 1.57 6.76 -51.92 -0.35 1.22 16 31 H 0.02 0.42 6.38 -51.93 -0.33 0.09 16 32 H 0.09 1.59 7.64 -51.93 -0.40 1.19 16 33 H 0.05 1.10 7.36 -51.93 -0.38 0.72 16 34 H 0.10 1.20 6.96 -51.93 -0.36 0.84 16 35 H 0.09 1.04 8.14 -51.93 -0.42 0.62 16 36 H 0.41 1.36 9.10 45.56 0.41 1.77 16 37 H 0.12 0.95 8.14 -51.93 -0.42 0.53 16 38 H 0.11 0.98 7.73 -51.93 -0.40 0.58 16 LS Contribution 310.27 15.07 4.68 4.68 Total: -1.00 -33.38 310.27 -6.84 -40.23 By element: Atomic # 1 Polarization: 5.21 SS G_CDS: -4.34 Total: 0.87 kcal Atomic # 6 Polarization: 7.56 SS G_CDS: -0.35 Total: 7.21 kcal Atomic # 7 Polarization: -46.48 SS G_CDS: -1.08 Total: -47.56 kcal Atomic # 8 Polarization: -20.88 SS G_CDS: -0.73 Total: -21.61 kcal Atomic # 14 Polarization: 21.20 SS G_CDS: -5.02 Total: 16.18 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -33.38 -6.84 -40.23 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833515243.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -66.820 kcal (2) G-P(sol) polarization free energy of solvation -33.381 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -100.201 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.845 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.225 kcal (6) G-S(sol) free energy of system = (1) + (5) -107.045 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds