Wall clock time and date at job start Mon Mar 30 2020 02:22:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09004 * 109.47515 * 2 1 4 4 C 1.50707 * 109.46898 * 119.99464 * 2 1 3 5 5 H 1.07994 * 119.99946 * 120.00052 * 4 2 1 6 6 C 1.37878 * 119.99668 * 300.00123 * 4 2 1 7 7 N 1.31507 * 120.00346 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99699 * 179.97438 * 6 4 2 9 9 H 1.48500 * 109.46930 * 60.00114 * 8 6 4 10 10 H 1.48495 * 109.47174 * 180.02562 * 8 6 4 11 11 H 1.48500 * 109.47139 * 300.00349 * 8 6 4 12 12 N 1.46898 * 109.47397 * 239.99269 * 2 1 3 13 13 C 1.46895 * 111.00140 * 306.04986 * 12 2 1 14 14 C 1.46902 * 110.99888 * 70.00406 * 12 2 1 15 15 N 1.46494 * 109.47194 * 154.99793 * 14 12 2 16 16 C 1.46765 * 124.35470 * 270.00000 * 15 14 12 17 17 C 1.54831 * 105.49704 * 197.01816 * 16 15 14 18 18 H 1.08999 * 111.07622 * 216.48807 * 17 16 15 19 19 C 1.50698 * 111.01133 * 92.61336 * 17 16 15 20 20 O 1.20815 * 120.00389 * 6.34035 * 19 17 16 21 21 O 1.34235 * 119.99448 * 186.33795 * 19 17 16 22 22 C 1.54631 * 101.60220 * 334.56264 * 17 16 15 23 23 C 1.34418 * 124.34952 * 89.97619 * 15 14 12 24 24 O 1.21284 * 124.94191 * 359.57303 * 23 15 14 25 25 H 1.08993 * 109.47470 * 300.00875 * 1 2 3 26 26 H 1.09005 * 109.46539 * 60.00646 * 1 2 3 27 27 H 1.08996 * 109.47206 * 179.97438 * 1 2 3 28 28 H 0.97004 * 120.00171 * 180.02562 * 7 6 4 29 29 H 1.09003 * 109.47266 * 183.95417 * 13 12 2 30 30 H 1.09007 * 109.47006 * 303.95251 * 13 12 2 31 31 H 1.08999 * 109.47111 * 63.95187 * 13 12 2 32 32 H 1.09002 * 109.46850 * 34.99902 * 14 12 2 33 33 H 1.09001 * 109.47256 * 274.99980 * 14 12 2 34 34 H 1.09001 * 110.23936 * 315.99466 * 16 15 14 35 35 H 1.09002 * 110.24650 * 77.98882 * 16 15 14 36 36 H 0.96701 * 116.99461 * 180.02562 * 21 19 17 37 37 H 1.09002 * 110.48855 * 266.08223 * 22 17 16 38 38 H 1.08998 * 110.48570 * 143.57284 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0277 0.0000 4 6 2.0323 -0.7103 1.2306 5 1 2.6531 -1.5884 1.1316 6 6 1.6991 -0.2391 2.4828 7 7 0.9426 0.8298 2.6033 8 14 2.3211 -1.1200 4.0081 9 1 3.8061 -1.1205 4.0084 10 1 1.8257 -0.4202 5.2205 11 1 1.8256 -2.5199 4.0080 12 7 2.0197 -0.6926 -1.1993 13 6 1.4344 -2.0355 -1.3076 14 6 1.7531 0.0970 -2.4090 15 7 2.7158 -0.2666 -3.4516 16 6 4.0144 0.3893 -3.6450 17 6 4.4677 -0.0033 -5.0724 18 1 5.5465 -0.1538 -5.1136 19 6 4.0300 1.0273 -6.0810 20 8 3.5114 2.0535 -5.7100 21 8 4.2164 0.8051 -7.3916 22 6 3.7146 -1.3375 -5.2819 23 6 2.5235 -1.2443 -4.3539 24 8 1.5388 -1.9496 -4.4146 25 1 -0.3634 0.5139 0.8898 26 1 -0.3632 0.5138 -0.8901 27 1 -0.3633 -1.0276 -0.0005 28 1 0.7085 1.1616 3.4843 29 1 1.8665 -2.5523 -2.1646 30 1 1.6466 -2.5988 -0.3988 31 1 0.3556 -1.9521 -1.4397 32 1 1.8501 1.1581 -2.1790 33 1 0.7419 -0.1075 -2.7609 34 1 3.9055 1.4712 -3.5685 35 1 4.7325 0.0288 -2.9084 36 1 3.9196 1.4953 -8.0004 37 1 4.3480 -2.1806 -5.0062 38 1 3.3854 -1.4313 -6.3168 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833515243.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:31 Heat of formation + Delta-G solvation = -132.461554 kcal Electronic energy + Delta-G solvation = -21523.407429 eV Core-core repulsion = 18172.389302 eV Total energy + Delta-G solvation = -3351.018128 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -42.05543 -40.63324 -38.74851 -37.49284 -36.92544 -34.91479 -33.20671 -30.43107 -28.78807 -28.08405 -27.27885 -25.83230 -24.51853 -21.73534 -21.48094 -20.34018 -19.07721 -18.38636 -18.26750 -17.73232 -17.04642 -16.82463 -16.44731 -16.30162 -15.62546 -15.36953 -14.99110 -14.45267 -14.37337 -14.35827 -13.96676 -13.64263 -13.46692 -12.97688 -12.91502 -12.85146 -12.66436 -12.64584 -12.49936 -12.42746 -12.32035 -12.05930 -11.86285 -11.52512 -11.03913 -10.86428 -10.49099 -9.90727 -9.03558 -8.10327 -6.21475 1.16718 1.44913 1.46109 1.52544 1.54641 1.92358 2.10278 2.44681 3.18743 3.20063 3.30207 3.40233 3.77759 4.07869 4.23214 4.34106 4.42574 4.51260 4.64353 4.66515 4.71171 4.72672 4.82397 4.84000 4.89633 5.06147 5.10032 5.36412 5.45511 5.62340 5.66836 5.76500 6.06924 6.21737 6.40792 6.59846 6.88865 6.98236 7.12570 7.47477 8.95437 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.031628 B = 0.004413 C = 0.004300 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 885.085315 B = 6342.866461 C = 6510.274719 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.221 3.779 3 H 0.017 0.983 4 C -0.514 4.514 5 H 0.056 0.944 6 C 0.014 3.986 7 N -0.920 5.920 8 Si 0.960 3.040 9 H -0.270 1.270 10 H -0.285 1.285 11 H -0.275 1.275 12 N -0.547 5.547 13 C 0.054 3.946 14 C 0.295 3.705 15 N -0.605 5.605 16 C 0.109 3.891 17 C -0.082 4.082 18 H 0.187 0.813 19 C 0.489 3.511 20 O -0.547 6.547 21 O -0.504 6.504 22 C -0.127 4.127 23 C 0.496 3.504 24 O -0.579 6.579 25 H 0.066 0.934 26 H 0.020 0.980 27 H 0.029 0.971 28 H 0.262 0.738 29 H 0.055 0.945 30 H 0.058 0.942 31 H 0.009 0.991 32 H 0.086 0.914 33 H 0.037 0.963 34 H 0.086 0.914 35 H 0.106 0.894 36 H 0.429 0.571 37 H 0.151 0.849 38 H 0.121 0.879 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.350 -1.048 -17.992 20.783 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.114 3.886 3 H 0.035 0.965 4 C -0.552 4.552 5 H 0.074 0.926 6 C -0.185 4.185 7 N -0.560 5.560 8 Si 0.786 3.214 9 H -0.195 1.195 10 H -0.211 1.211 11 H -0.200 1.200 12 N -0.273 5.273 13 C -0.094 4.094 14 C 0.083 3.917 15 N -0.338 5.338 16 C -0.013 4.013 17 C -0.101 4.101 18 H 0.204 0.796 19 C 0.333 3.667 20 O -0.437 6.437 21 O -0.317 6.317 22 C -0.167 4.167 23 C 0.285 3.715 24 O -0.459 6.459 25 H 0.085 0.915 26 H 0.039 0.961 27 H 0.048 0.952 28 H 0.071 0.929 29 H 0.073 0.927 30 H 0.077 0.923 31 H 0.028 0.972 32 H 0.104 0.896 33 H 0.055 0.945 34 H 0.105 0.895 35 H 0.124 0.876 36 H 0.291 0.709 37 H 0.169 0.831 38 H 0.140 0.860 Dipole moment (debyes) X Y Z Total from point charges 10.213 -1.322 -17.429 20.245 hybrid contribution -1.359 0.488 0.685 1.598 sum 8.854 -0.835 -16.745 18.960 Atomic orbital electron populations 1.22259 1.00433 0.99175 1.00032 1.19080 0.89854 0.93171 0.86505 0.96490 1.21259 1.30816 1.12512 0.90622 0.92561 1.25660 0.95315 0.95765 1.01746 1.69991 1.37677 1.24128 1.24165 0.85580 0.78827 0.78494 0.78514 1.19536 1.21073 1.20009 1.62027 1.59507 1.03264 1.02498 1.22061 0.95783 0.90891 1.00674 1.21561 0.89465 0.96845 0.83847 1.48507 1.19808 1.35582 1.29919 1.22311 0.84257 0.99404 0.95335 1.22123 1.06063 0.91754 0.90152 0.79581 1.23351 0.73947 0.86271 0.83165 1.90761 1.41582 1.30027 1.81300 1.84459 1.77303 1.52690 1.17292 1.22373 0.94577 0.98609 1.01133 1.21783 0.88702 0.78624 0.82424 1.90694 1.34216 1.46476 1.74532 0.91491 0.96141 0.95161 0.92902 0.92653 0.92320 0.97226 0.89607 0.94513 0.89543 0.87603 0.70907 0.83133 0.86043 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -7.95 8.26 71.98 0.59 -7.36 16 2 C 0.22 11.19 2.27 44.17 0.10 11.29 16 3 H 0.02 0.94 7.80 -2.39 -0.02 0.92 16 4 C -0.51 -28.02 7.91 25.60 0.20 -27.81 16 5 H 0.06 3.08 7.12 -2.91 -0.02 3.06 16 6 C 0.01 0.76 5.30 84.66 0.45 1.21 16 7 N -0.92 -52.36 11.32 21.45 0.24 -52.12 16 8 Si 0.96 43.37 29.54 68.60 2.03 45.40 16 9 H -0.27 -11.85 7.11 99.48 0.71 -11.14 16 10 H -0.29 -12.66 7.11 99.48 0.71 -11.95 16 11 H -0.27 -12.19 7.11 99.48 0.71 -11.48 16 12 N -0.55 -23.93 4.80 -913.83 -4.39 -28.32 16 13 C 0.05 2.34 8.43 127.69 1.08 3.42 16 14 C 0.29 11.35 4.98 170.81 0.85 12.20 16 15 N -0.60 -18.73 3.15 -828.33 -2.61 -21.33 16 16 C 0.11 2.38 6.74 86.95 0.59 2.97 16 17 C -0.08 -1.12 3.67 -10.36 -0.04 -1.16 16 18 H 0.19 0.80 8.14 -2.39 -0.02 0.78 16 19 C 0.49 8.40 7.62 71.24 0.54 8.94 16 20 O -0.55 -14.14 16.28 22.00 0.36 -13.78 16 21 O -0.50 -5.44 13.21 -51.46 -0.68 -6.12 16 22 C -0.13 -2.08 6.39 30.59 0.20 -1.88 16 23 C 0.50 14.95 7.30 87.90 0.64 15.60 16 24 O -0.58 -22.65 16.27 -3.04 -0.05 -22.70 16 25 H 0.07 3.66 6.07 -2.39 -0.01 3.64 16 26 H 0.02 0.91 7.31 -2.38 -0.02 0.89 16 27 H 0.03 1.48 6.41 -2.39 -0.02 1.46 16 28 H 0.26 14.25 8.31 -92.71 -0.77 13.48 16 29 H 0.05 2.28 6.13 -2.39 -0.01 2.26 16 30 H 0.06 2.64 6.76 -2.38 -0.02 2.62 16 31 H 0.01 0.42 6.38 -2.39 -0.02 0.40 16 32 H 0.09 3.26 7.64 -2.39 -0.02 3.24 16 33 H 0.04 1.54 7.36 -2.39 -0.02 1.52 16 34 H 0.09 2.09 6.96 -2.39 -0.02 2.08 16 35 H 0.11 2.08 8.14 -2.39 -0.02 2.06 16 36 H 0.43 1.58 9.10 -74.06 -0.67 0.91 16 37 H 0.15 1.63 8.14 -2.39 -0.02 1.61 16 38 H 0.12 1.74 7.73 -2.39 -0.02 1.72 16 Total: -1.00 -74.00 310.27 0.52 -73.48 By element: Atomic # 1 Polarization: 7.66 SS G_CDS: 0.41 Total: 8.08 kcal Atomic # 6 Polarization: 12.21 SS G_CDS: 5.20 Total: 17.42 kcal Atomic # 7 Polarization: -95.02 SS G_CDS: -6.75 Total: -101.77 kcal Atomic # 8 Polarization: -42.23 SS G_CDS: -0.37 Total: -42.61 kcal Atomic # 14 Polarization: 43.37 SS G_CDS: 2.03 Total: 45.40 kcal Total: -74.00 0.52 -73.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833515243.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.980 kcal (2) G-P(sol) polarization free energy of solvation -74.004 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -132.984 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.523 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -132.462 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds