Wall clock time and date at job start Mon Mar 30 2020 02:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47106 * 2 1 4 4 C 1.50701 * 109.46985 * 119.99875 * 2 1 3 5 5 H 1.08003 * 119.99673 * 120.00276 * 4 2 1 6 6 C 1.37870 * 120.00032 * 300.00212 * 4 2 1 7 7 N 1.31522 * 119.99670 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 120.00152 * 359.97438 * 6 4 2 9 9 H 1.48512 * 109.46715 * 90.00581 * 8 6 4 10 10 H 1.48500 * 109.47241 * 209.99946 * 8 6 4 11 11 H 1.48498 * 109.47315 * 330.00586 * 8 6 4 12 12 N 1.46899 * 109.47026 * 239.99816 * 2 1 3 13 13 C 1.46896 * 111.00325 * 306.04662 * 12 2 1 14 14 C 1.46909 * 110.99758 * 69.99922 * 12 2 1 15 15 N 1.46497 * 109.46712 * 154.99831 * 14 12 2 16 16 C 1.46767 * 124.35105 * 269.95102 * 15 14 12 17 17 C 1.54481 * 105.47391 * 197.04272 * 16 15 14 18 18 H 1.09002 * 110.97229 * 92.70050 * 17 16 15 19 19 C 1.50695 * 111.00021 * 216.45067 * 17 16 15 20 20 O 1.20826 * 120.00214 * 356.88487 * 19 17 16 21 21 O 1.34232 * 120.00362 * 176.88646 * 19 17 16 22 22 C 1.54632 * 101.76299 * 334.58189 * 17 16 15 23 23 C 1.34418 * 124.35219 * 89.97858 * 15 14 12 24 24 O 1.21284 * 124.93754 * 359.53175 * 23 15 14 25 25 H 1.08998 * 109.47151 * 299.99924 * 1 2 3 26 26 H 1.08997 * 109.47110 * 60.00313 * 1 2 3 27 27 H 1.08999 * 109.47106 * 179.97438 * 1 2 3 28 28 H 0.97006 * 119.99573 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47468 * 183.95038 * 13 12 2 30 30 H 1.09004 * 109.47257 * 303.95335 * 13 12 2 31 31 H 1.09000 * 109.47519 * 63.95255 * 13 12 2 32 32 H 1.08999 * 109.46683 * 35.00248 * 14 12 2 33 33 H 1.08999 * 109.46803 * 274.99529 * 14 12 2 34 34 H 1.08997 * 110.24641 * 78.03488 * 16 15 14 35 35 H 1.09003 * 110.24346 * 316.03587 * 16 15 14 36 36 H 0.96700 * 117.00331 * 179.97438 * 21 19 17 37 37 H 1.09004 * 110.48489 * 143.48083 * 22 17 16 38 38 H 1.09003 * 110.48700 * 265.98876 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1380 -0.8591 3.5565 8 14 0.6258 1.2798 2.6541 9 1 -0.8022 0.8743 2.6993 10 1 0.9771 1.9953 3.9070 11 1 0.8490 2.1773 1.4922 12 7 2.0197 -0.6925 -1.1994 13 6 1.4343 -2.0355 -1.3078 14 6 1.7528 0.0972 -2.4091 15 7 2.7155 -0.2664 -3.4517 16 6 4.0137 0.3903 -3.6457 17 6 4.4651 -0.0017 -5.0702 18 1 4.1487 0.7446 -5.7989 19 6 5.9569 -0.2077 -5.1264 20 8 6.6320 -0.0062 -4.1448 21 8 6.5357 -0.6150 -6.2670 22 6 3.7137 -1.3363 -5.2829 23 6 2.5233 -1.2439 -4.3541 24 8 1.5388 -1.9497 -4.4143 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.9039 -0.5275 4.4376 29 1 1.8664 -2.5521 -2.1648 30 1 1.6466 -2.5988 -0.3991 31 1 0.3556 -1.9521 -1.4399 32 1 1.8499 1.1582 -2.1789 33 1 0.7417 -0.1074 -2.7608 34 1 4.7324 0.0301 -2.9097 35 1 3.9043 1.4721 -3.5691 36 1 7.4954 -0.7329 -6.2545 37 1 3.3840 -1.4277 -6.3178 38 1 4.3486 -2.1793 -5.0099 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833515245.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:34 Heat of formation + Delta-G solvation = -97.448842 kcal Electronic energy + Delta-G solvation = -21456.421816 eV Core-core repulsion = 18106.921954 eV Total energy + Delta-G solvation = -3349.499863 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.11106 -39.79481 -37.28424 -36.63067 -36.04110 -33.13385 -31.92790 -29.50228 -27.92979 -26.69036 -25.30476 -24.67104 -23.06971 -21.00263 -19.83338 -19.08467 -18.38896 -17.45766 -16.96462 -16.51219 -15.85227 -15.62048 -15.39707 -14.86538 -14.29784 -13.94473 -13.71238 -13.51784 -13.31243 -13.18480 -12.82858 -12.57376 -12.22612 -11.95273 -11.76711 -11.65698 -11.53742 -11.28758 -11.14721 -10.87589 -10.86585 -10.37584 -10.05270 -9.78866 -9.57528 -9.13602 -8.72137 -8.57270 -7.45931 -6.07688 -4.06197 1.85913 2.51824 2.64097 3.14909 3.24147 3.32434 3.36601 3.97382 4.16992 4.37326 4.58916 4.66203 4.84423 5.02212 5.23533 5.30236 5.37848 5.40572 5.54002 5.71581 5.83562 6.07427 6.17933 6.20357 6.27089 6.29998 6.46267 6.58132 6.67680 6.90667 7.12550 7.22538 7.55974 7.57551 7.85749 7.98184 8.24325 8.63339 9.00717 9.53469 11.05455 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.026120 B = 0.004808 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.731713 B = 5822.556371 C = 6310.190613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.187 4.187 2 C 0.186 3.814 3 H 0.040 0.960 4 C -0.501 4.501 5 H 0.082 0.918 6 C 0.070 3.930 7 N -0.898 5.898 8 Si 0.887 3.113 9 H -0.280 1.280 10 H -0.296 1.296 11 H -0.269 1.269 12 N -0.538 5.538 13 C 0.038 3.962 14 C 0.285 3.715 15 N -0.601 5.601 16 C 0.117 3.883 17 C -0.097 4.097 18 H 0.129 0.871 19 C 0.491 3.509 20 O -0.500 6.500 21 O -0.514 6.514 22 C -0.140 4.140 23 C 0.518 3.482 24 O -0.527 6.527 25 H 0.046 0.954 26 H 0.027 0.973 27 H 0.059 0.941 28 H 0.264 0.736 29 H 0.050 0.950 30 H 0.077 0.923 31 H 0.020 0.980 32 H 0.087 0.913 33 H 0.059 0.941 34 H 0.097 0.903 35 H 0.088 0.912 36 H 0.413 0.587 37 H 0.112 0.888 38 H 0.108 0.892 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.909 3.762 -20.034 20.967 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.246 4.246 2 C 0.078 3.922 3 H 0.058 0.942 4 C -0.539 4.539 5 H 0.100 0.900 6 C -0.132 4.132 7 N -0.537 5.537 8 Si 0.718 3.282 9 H -0.207 1.207 10 H -0.224 1.224 11 H -0.194 1.194 12 N -0.263 5.263 13 C -0.110 4.110 14 C 0.074 3.926 15 N -0.335 5.335 16 C -0.006 4.006 17 C -0.117 4.117 18 H 0.146 0.854 19 C 0.332 3.668 20 O -0.386 6.386 21 O -0.326 6.326 22 C -0.180 4.180 23 C 0.305 3.695 24 O -0.404 6.404 25 H 0.065 0.935 26 H 0.046 0.954 27 H 0.078 0.922 28 H 0.074 0.926 29 H 0.069 0.931 30 H 0.096 0.904 31 H 0.038 0.962 32 H 0.105 0.895 33 H 0.077 0.923 34 H 0.115 0.885 35 H 0.106 0.894 36 H 0.272 0.728 37 H 0.130 0.870 38 H 0.126 0.874 Dipole moment (debyes) X Y Z Total from point charges 4.602 3.475 -19.466 20.302 hybrid contribution -0.718 0.864 0.253 1.152 sum 3.883 4.339 -19.213 20.076 Atomic orbital electron populations 1.22869 1.01391 1.01404 0.98921 1.19774 0.88830 0.95041 0.88508 0.94225 1.20895 1.31564 1.13842 0.87638 0.89996 1.24914 0.95875 0.96604 0.95789 1.69883 1.45628 1.40287 0.97876 0.86883 0.80578 0.83844 0.76935 1.20746 1.22397 1.19416 1.61878 1.59572 1.03182 1.01662 1.22286 0.96180 0.90639 1.01908 1.21856 0.89257 0.97150 0.84296 1.48456 1.18845 1.35364 1.30852 1.21980 0.85948 0.98926 0.93786 1.21886 0.88090 1.00671 1.01049 0.85354 1.22862 0.91036 0.72752 0.80153 1.90798 1.65032 1.46620 1.36195 1.84507 1.29849 1.79789 1.38483 1.22311 0.96562 0.96863 1.02300 1.20592 0.87546 0.79567 0.81840 1.90738 1.31866 1.44501 1.73270 0.93540 0.95428 0.92173 0.92604 0.93135 0.90412 0.96152 0.89534 0.92347 0.88487 0.89351 0.72791 0.86980 0.87406 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -4.01 7.97 37.16 0.30 -3.72 16 2 C 0.19 4.30 1.86 -68.86 -0.13 4.17 16 3 H 0.04 0.93 6.85 -51.93 -0.36 0.57 16 4 C -0.50 -13.89 8.49 -34.44 -0.29 -14.18 16 5 H 0.08 2.52 7.37 -52.48 -0.39 2.13 16 6 C 0.07 1.99 5.45 -17.82 -0.10 1.89 16 7 N -0.90 -27.30 13.96 55.43 0.77 -26.53 16 8 Si 0.89 21.58 24.37 -169.99 -4.14 17.43 16 9 H -0.28 -6.69 6.87 56.52 0.39 -6.31 16 10 H -0.30 -7.26 7.11 56.52 0.40 -6.86 16 11 H -0.27 -6.18 6.53 56.52 0.37 -5.81 16 12 N -0.54 -11.12 4.80 -240.19 -1.15 -12.27 16 13 C 0.04 0.78 8.43 60.06 0.51 1.29 16 14 C 0.29 4.79 4.99 -63.31 -0.32 4.48 16 15 N -0.60 -8.67 3.15 -175.90 -0.55 -9.22 16 16 C 0.12 1.35 6.69 -3.12 -0.02 1.33 16 17 C -0.10 -0.82 3.65 -90.14 -0.33 -1.15 16 18 H 0.13 0.73 8.14 -51.93 -0.42 0.31 16 19 C 0.49 4.49 7.55 36.00 0.27 4.76 16 20 O -0.50 -6.43 16.29 -18.75 -0.31 -6.74 16 21 O -0.51 -3.27 13.42 -39.26 -0.53 -3.79 16 22 C -0.14 -1.35 6.41 -26.74 -0.17 -1.52 16 23 C 0.52 7.52 7.30 -10.86 -0.08 7.44 16 24 O -0.53 -9.61 16.27 5.55 0.09 -9.52 16 25 H 0.05 1.04 3.27 -51.93 -0.17 0.87 16 26 H 0.03 0.50 7.31 -51.93 -0.38 0.12 16 27 H 0.06 1.30 6.41 -51.93 -0.33 0.96 16 28 H 0.26 7.54 8.31 -40.82 -0.34 7.20 16 29 H 0.05 1.02 6.13 -51.93 -0.32 0.70 16 30 H 0.08 1.75 6.76 -51.93 -0.35 1.40 16 31 H 0.02 0.41 6.38 -51.93 -0.33 0.08 16 32 H 0.09 1.32 7.64 -51.93 -0.40 0.92 16 33 H 0.06 1.01 7.36 -51.93 -0.38 0.63 16 34 H 0.10 1.36 7.01 -51.93 -0.36 0.99 16 35 H 0.09 0.85 8.14 -51.93 -0.42 0.43 16 36 H 0.41 1.03 9.10 45.56 0.41 1.44 16 37 H 0.11 0.85 8.14 -51.93 -0.42 0.43 16 38 H 0.11 1.03 7.89 -51.93 -0.41 0.62 16 LS Contribution 303.78 15.07 4.58 4.58 Total: -1.00 -34.65 303.78 -5.81 -40.46 By element: Atomic # 1 Polarization: 5.03 SS G_CDS: -4.21 Total: 0.82 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: -0.36 Total: 4.79 kcal Atomic # 7 Polarization: -47.09 SS G_CDS: -0.93 Total: -48.03 kcal Atomic # 8 Polarization: -19.31 SS G_CDS: -0.74 Total: -20.05 kcal Atomic # 14 Polarization: 21.58 SS G_CDS: -4.14 Total: 17.43 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -34.65 -5.81 -40.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833515245.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -56.989 kcal (2) G-P(sol) polarization free energy of solvation -34.647 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -91.636 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.813 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.460 kcal (6) G-S(sol) free energy of system = (1) + (5) -97.449 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds