Wall clock time and date at job start Mon Mar 30 2020 02:22:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.47106 * 2 1 4 4 C 1.50701 * 109.46985 * 119.99875 * 2 1 3 5 5 H 1.08003 * 119.99673 * 120.00276 * 4 2 1 6 6 C 1.37870 * 120.00032 * 300.00212 * 4 2 1 7 7 N 1.31522 * 119.99670 * 180.02562 * 6 4 2 8 8 Si 1.86799 * 120.00152 * 359.97438 * 6 4 2 9 9 H 1.48512 * 109.46715 * 90.00581 * 8 6 4 10 10 H 1.48500 * 109.47241 * 209.99946 * 8 6 4 11 11 H 1.48498 * 109.47315 * 330.00586 * 8 6 4 12 12 N 1.46899 * 109.47026 * 239.99816 * 2 1 3 13 13 C 1.46896 * 111.00325 * 306.04662 * 12 2 1 14 14 C 1.46909 * 110.99758 * 69.99922 * 12 2 1 15 15 N 1.46497 * 109.46712 * 154.99831 * 14 12 2 16 16 C 1.46767 * 124.35105 * 269.95102 * 15 14 12 17 17 C 1.54481 * 105.47391 * 197.04272 * 16 15 14 18 18 H 1.09002 * 110.97229 * 92.70050 * 17 16 15 19 19 C 1.50695 * 111.00021 * 216.45067 * 17 16 15 20 20 O 1.20826 * 120.00214 * 356.88487 * 19 17 16 21 21 O 1.34232 * 120.00362 * 176.88646 * 19 17 16 22 22 C 1.54632 * 101.76299 * 334.58189 * 17 16 15 23 23 C 1.34418 * 124.35219 * 89.97858 * 15 14 12 24 24 O 1.21284 * 124.93754 * 359.53175 * 23 15 14 25 25 H 1.08998 * 109.47151 * 299.99924 * 1 2 3 26 26 H 1.08997 * 109.47110 * 60.00313 * 1 2 3 27 27 H 1.08999 * 109.47106 * 179.97438 * 1 2 3 28 28 H 0.97006 * 119.99573 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47468 * 183.95038 * 13 12 2 30 30 H 1.09004 * 109.47257 * 303.95335 * 13 12 2 31 31 H 1.09000 * 109.47519 * 63.95255 * 13 12 2 32 32 H 1.08999 * 109.46683 * 35.00248 * 14 12 2 33 33 H 1.08999 * 109.46803 * 274.99529 * 14 12 2 34 34 H 1.08997 * 110.24641 * 78.03488 * 16 15 14 35 35 H 1.09003 * 110.24346 * 316.03587 * 16 15 14 36 36 H 0.96700 * 117.00331 * 179.97438 * 21 19 17 37 37 H 1.09004 * 110.48489 * 143.48083 * 22 17 16 38 38 H 1.09003 * 110.48700 * 265.98876 * 22 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 1.2305 5 1 2.6533 -1.5885 1.1314 6 6 1.6992 -0.2394 2.4827 7 7 2.1380 -0.8591 3.5565 8 14 0.6258 1.2798 2.6541 9 1 -0.8022 0.8743 2.6993 10 1 0.9771 1.9953 3.9070 11 1 0.8490 2.1773 1.4922 12 7 2.0197 -0.6925 -1.1994 13 6 1.4343 -2.0355 -1.3078 14 6 1.7528 0.0972 -2.4091 15 7 2.7155 -0.2664 -3.4517 16 6 4.0137 0.3903 -3.6457 17 6 4.4651 -0.0017 -5.0702 18 1 4.1487 0.7446 -5.7989 19 6 5.9569 -0.2077 -5.1264 20 8 6.6320 -0.0062 -4.1448 21 8 6.5357 -0.6150 -6.2670 22 6 3.7137 -1.3363 -5.2829 23 6 2.5233 -1.2439 -4.3541 24 8 1.5388 -1.9497 -4.4143 25 1 -0.3633 0.5138 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0277 -0.0005 28 1 1.9039 -0.5275 4.4376 29 1 1.8664 -2.5521 -2.1648 30 1 1.6466 -2.5988 -0.3991 31 1 0.3556 -1.9521 -1.4399 32 1 1.8499 1.1582 -2.1789 33 1 0.7417 -0.1074 -2.7608 34 1 4.7324 0.0301 -2.9097 35 1 3.9043 1.4721 -3.5691 36 1 7.4954 -0.7329 -6.2545 37 1 3.3840 -1.4277 -6.3178 38 1 4.3486 -2.1793 -5.0099 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833515245.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:34 Heat of formation + Delta-G solvation = -125.960059 kcal Electronic energy + Delta-G solvation = -21457.658155 eV Core-core repulsion = 18106.921954 eV Total energy + Delta-G solvation = -3350.736202 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -41.99451 -40.74315 -38.91407 -37.50086 -36.95129 -34.87407 -33.41138 -31.22374 -28.86784 -28.10279 -27.24008 -25.87217 -24.41356 -21.76892 -21.45370 -20.34204 -19.09804 -18.73950 -18.27311 -17.84193 -17.16861 -16.84030 -16.45692 -16.34727 -15.66607 -15.55431 -15.04817 -14.56523 -14.47574 -14.44177 -14.08747 -13.98065 -13.91317 -13.31055 -13.12574 -12.90805 -12.74863 -12.51576 -12.47112 -12.35643 -12.18314 -11.91032 -11.65092 -11.46016 -11.18148 -10.89739 -10.76613 -9.92046 -9.08419 -8.26954 -6.30785 1.16258 1.32290 1.36994 1.47802 1.49000 1.79583 2.19134 2.33065 3.06744 3.17800 3.27730 3.33388 3.82341 3.97567 4.13127 4.30886 4.36426 4.42761 4.46318 4.55530 4.56211 4.60992 4.66691 4.74778 4.79472 4.92214 4.94669 5.12686 5.29038 5.46348 5.58937 5.63863 5.99964 6.07542 6.30789 6.63025 6.74952 7.00038 7.11262 7.33621 8.90289 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.026120 B = 0.004808 C = 0.004436 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1071.731713 B = 5822.556371 C = 6310.190613 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.191 3.809 3 H 0.048 0.952 4 C -0.504 4.504 5 H 0.031 0.969 6 C 0.010 3.990 7 N -0.951 5.951 8 Si 0.953 3.047 9 H -0.270 1.270 10 H -0.300 1.300 11 H -0.239 1.239 12 N -0.554 5.554 13 C 0.054 3.946 14 C 0.285 3.715 15 N -0.604 5.604 16 C 0.112 3.888 17 C -0.082 4.082 18 H 0.169 0.831 19 C 0.501 3.499 20 O -0.544 6.544 21 O -0.503 6.503 22 C -0.128 4.128 23 C 0.508 3.492 24 O -0.570 6.570 25 H 0.041 0.959 26 H 0.063 0.937 27 H 0.049 0.951 28 H 0.265 0.735 29 H 0.052 0.948 30 H 0.045 0.955 31 H 0.025 0.975 32 H 0.108 0.892 33 H 0.058 0.942 34 H 0.067 0.933 35 H 0.112 0.888 36 H 0.431 0.569 37 H 0.142 0.858 38 H 0.109 0.891 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.399 6.059 -22.927 24.119 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.240 4.240 2 C 0.082 3.918 3 H 0.066 0.934 4 C -0.543 4.543 5 H 0.050 0.950 6 C -0.187 4.187 7 N -0.592 5.592 8 Si 0.780 3.220 9 H -0.196 1.196 10 H -0.228 1.228 11 H -0.163 1.163 12 N -0.279 5.279 13 C -0.095 4.095 14 C 0.074 3.926 15 N -0.337 5.337 16 C -0.011 4.011 17 C -0.101 4.101 18 H 0.187 0.813 19 C 0.344 3.656 20 O -0.434 6.434 21 O -0.316 6.316 22 C -0.168 4.168 23 C 0.297 3.703 24 O -0.450 6.450 25 H 0.059 0.941 26 H 0.082 0.918 27 H 0.068 0.932 28 H 0.074 0.926 29 H 0.071 0.929 30 H 0.063 0.937 31 H 0.044 0.956 32 H 0.126 0.874 33 H 0.076 0.924 34 H 0.085 0.915 35 H 0.130 0.870 36 H 0.293 0.707 37 H 0.160 0.840 38 H 0.127 0.873 Dipole moment (debyes) X Y Z Total from point charges 4.132 5.776 -22.432 23.530 hybrid contribution -0.439 0.032 1.082 1.168 sum 3.692 5.808 -21.350 22.432 Atomic orbital electron populations 1.22736 0.99602 1.01333 1.00351 1.19579 0.90065 0.94637 0.87491 0.93391 1.21129 1.30525 1.12491 0.90140 0.95030 1.25820 0.97471 1.00215 0.95177 1.70057 1.47863 1.42677 0.98603 0.85797 0.78690 0.79836 0.77667 1.19643 1.22766 1.16254 1.61783 1.60047 1.03322 1.02753 1.22052 0.96447 0.90792 1.00179 1.21862 0.90051 0.97606 0.83053 1.48517 1.19457 1.35748 1.30008 1.22090 0.83810 0.99982 0.95175 1.21871 0.87537 1.00852 0.99811 0.81336 1.22887 0.91135 0.71673 0.79950 1.90804 1.66035 1.48758 1.37831 1.84462 1.31579 1.78801 1.36794 1.22280 0.94367 0.97569 1.02559 1.21419 0.88133 0.78559 0.82234 1.90711 1.33899 1.45860 1.74502 0.94077 0.91777 0.93168 0.92583 0.92930 0.93660 0.95611 0.87373 0.92439 0.91512 0.86954 0.70660 0.83975 0.87300 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -7.38 7.97 71.98 0.57 -6.81 16 2 C 0.19 8.64 1.86 44.17 0.08 8.72 16 3 H 0.05 2.12 6.85 -2.39 -0.02 2.11 16 4 C -0.50 -28.82 8.49 25.60 0.22 -28.60 16 5 H 0.03 2.07 7.37 -2.91 -0.02 2.04 16 6 C 0.01 0.58 5.45 84.65 0.46 1.04 16 7 N -0.95 -59.96 13.96 21.45 0.30 -59.66 16 8 Si 0.95 43.94 24.37 68.60 1.67 45.61 16 9 H -0.27 -11.95 6.87 99.48 0.68 -11.27 16 10 H -0.30 -13.90 7.11 99.48 0.71 -13.20 16 11 H -0.24 -9.80 6.53 99.48 0.65 -9.15 16 12 N -0.55 -22.76 4.80 -913.83 -4.39 -27.15 16 13 C 0.05 2.27 8.43 127.69 1.08 3.35 16 14 C 0.29 9.03 4.99 170.80 0.85 9.88 16 15 N -0.60 -16.32 3.15 -829.03 -2.61 -18.93 16 16 C 0.11 2.33 6.69 86.83 0.58 2.91 16 17 C -0.08 -1.09 3.65 -10.48 -0.04 -1.13 16 18 H 0.17 0.99 8.14 -2.39 -0.02 0.97 16 19 C 0.50 7.81 7.55 71.23 0.54 8.35 16 20 O -0.54 -13.38 16.29 21.97 0.36 -13.02 16 21 O -0.50 -4.65 13.42 -51.44 -0.69 -5.34 16 22 C -0.13 -2.08 6.41 30.59 0.20 -1.89 16 23 C 0.51 13.87 7.30 87.90 0.64 14.51 16 24 O -0.57 -20.29 16.27 -3.04 -0.05 -20.34 16 25 H 0.04 1.71 3.27 -2.39 -0.01 1.70 16 26 H 0.06 2.13 7.31 -2.39 -0.02 2.12 16 27 H 0.05 2.11 6.41 -2.39 -0.02 2.10 16 28 H 0.27 15.65 8.31 -92.70 -0.77 14.88 16 29 H 0.05 2.17 6.13 -2.39 -0.01 2.15 16 30 H 0.04 2.16 6.76 -2.38 -0.02 2.15 16 31 H 0.03 1.04 6.38 -2.39 -0.02 1.02 16 32 H 0.11 2.93 7.64 -2.39 -0.02 2.92 16 33 H 0.06 1.85 7.36 -2.39 -0.02 1.83 16 34 H 0.07 1.84 7.01 -2.39 -0.02 1.82 16 35 H 0.11 1.79 8.14 -2.39 -0.02 1.78 16 36 H 0.43 0.83 9.10 -74.06 -0.67 0.16 16 37 H 0.14 1.53 8.14 -2.38 -0.02 1.51 16 38 H 0.11 1.82 7.89 -2.39 -0.02 1.80 16 Total: -1.00 -79.17 303.78 0.12 -79.06 By element: Atomic # 1 Polarization: 9.10 SS G_CDS: 0.34 Total: 9.44 kcal Atomic # 6 Polarization: 5.15 SS G_CDS: 5.18 Total: 10.33 kcal Atomic # 7 Polarization: -99.04 SS G_CDS: -6.70 Total: -105.74 kcal Atomic # 8 Polarization: -38.32 SS G_CDS: -0.38 Total: -38.70 kcal Atomic # 14 Polarization: 43.94 SS G_CDS: 1.67 Total: 45.61 kcal Total: -79.17 0.12 -79.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833515245.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.904 kcal (2) G-P(sol) polarization free energy of solvation -79.172 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.076 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.116 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.056 kcal (6) G-S(sol) free energy of system = (1) + (5) -125.960 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds