Wall clock time and date at job start Mon Mar 30 2020 02:23:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52992 * 1 3 3 H 1.09007 * 109.47281 * 2 1 4 4 C 1.50701 * 109.47193 * 240.00147 * 2 1 3 5 5 H 1.08001 * 120.00118 * 240.00282 * 4 2 1 6 6 C 1.37878 * 119.99851 * 59.99845 * 4 2 1 7 7 N 1.31515 * 120.00017 * 0.02562 * 6 4 2 8 8 Si 1.86804 * 120.00026 * 180.02562 * 6 4 2 9 9 H 1.48497 * 109.46884 * 359.97438 * 8 6 4 10 10 H 1.48491 * 109.47209 * 119.99704 * 8 6 4 11 11 H 1.48501 * 109.46608 * 239.99842 * 8 6 4 12 12 N 1.46905 * 109.47524 * 120.00207 * 2 1 3 13 13 C 1.46900 * 110.99812 * 275.00158 * 12 2 1 14 14 H 1.09004 * 110.43743 * 36.08185 * 13 12 2 15 15 C 1.54627 * 110.59928 * 158.70443 * 13 12 2 16 16 C 1.54480 * 101.76536 * 93.93281 * 15 13 12 17 17 N 1.46766 * 105.47221 * 25.41761 * 16 15 13 18 18 C 1.46500 * 124.34898 * 162.98294 * 17 16 15 19 19 C 1.53000 * 109.47192 * 270.02565 * 18 17 16 20 20 C 1.50703 * 109.47290 * 180.02562 * 19 18 17 21 21 O 1.20825 * 119.99522 * 359.97438 * 20 19 18 22 22 O 1.34226 * 120.00216 * 180.02562 * 20 19 18 23 23 C 1.34413 * 111.30157 * 342.98130 * 17 16 15 24 24 O 1.21279 * 124.94390 * 180.66992 * 23 17 16 25 25 H 1.09008 * 109.46959 * 299.99485 * 1 2 3 26 26 H 1.08999 * 109.47770 * 59.99778 * 1 2 3 27 27 H 1.09002 * 109.47571 * 180.02562 * 1 2 3 28 28 H 0.96994 * 120.00060 * 180.02562 * 7 6 4 29 29 H 1.00891 * 110.99939 * 151.04850 * 12 2 1 30 30 H 1.09003 * 110.96695 * 212.05307 * 15 13 12 31 31 H 1.08999 * 110.96884 * 335.81107 * 15 13 12 32 32 H 1.09003 * 110.24307 * 144.41135 * 16 15 13 33 33 H 1.08996 * 110.24518 * 266.32960 * 16 15 13 34 34 H 1.08996 * 109.46984 * 30.02077 * 18 17 16 35 35 H 1.08999 * 109.47209 * 150.02307 * 18 17 16 36 36 H 1.09009 * 109.46984 * 299.99636 * 19 18 17 37 37 H 1.08999 * 109.47254 * 59.99770 * 19 18 17 38 38 H 0.96696 * 117.00296 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1314 6 6 1.6992 -0.2393 -2.4827 7 7 0.9434 0.8303 -2.6033 8 14 2.3212 -1.1202 -4.0080 9 1 3.1464 -2.2868 -3.6039 10 1 1.1660 -1.5866 -4.8161 11 1 3.1464 -0.1871 -4.8165 12 7 2.0197 -0.6925 1.1994 13 6 2.0825 0.2225 2.3469 14 1 1.2525 0.9285 2.3166 15 6 2.0715 -0.5690 3.6752 16 6 3.5813 -0.7093 3.9707 17 7 4.2209 0.4204 3.2861 18 6 5.5760 0.8992 3.5703 19 6 5.5205 1.9670 4.6647 20 6 6.9144 2.4600 4.9567 21 8 7.8555 2.0038 4.3517 22 8 7.1104 3.4052 5.8894 23 6 3.4037 0.9592 2.3649 24 8 3.6863 1.8963 1.6488 25 1 -0.3633 0.5138 0.8901 26 1 -0.3634 0.5138 -0.8899 27 1 -0.3634 -1.0277 0.0005 28 1 0.7088 1.1615 -3.4843 29 1 2.9173 -1.1204 1.0287 30 1 1.5709 -0.0042 4.4616 31 1 1.6073 -1.5463 3.5430 32 1 3.7624 -0.6515 5.0440 33 1 3.9568 -1.6532 3.5755 34 1 6.1927 0.0659 3.9068 35 1 6.0069 1.3282 2.6657 36 1 4.9037 2.8004 4.3283 37 1 5.0895 1.5380 5.5694 38 1 8.0220 3.6893 6.0417 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833516099.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:16 Heat of formation + Delta-G solvation = -151.700704 kcal Electronic energy + Delta-G solvation = -21039.148802 eV Core-core repulsion = 17687.296402 eV Total energy + Delta-G solvation = -3351.852400 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -41.74508 -41.14747 -37.68758 -37.46851 -37.08717 -35.10507 -33.57107 -31.16071 -29.61234 -27.57558 -26.99651 -25.84817 -22.56115 -22.32756 -21.80648 -20.45956 -19.15836 -18.67459 -18.06739 -17.37374 -17.18933 -17.10595 -16.71500 -16.35742 -15.40641 -15.14013 -15.02674 -14.59712 -14.42183 -14.40537 -14.04211 -13.64096 -13.43458 -13.20582 -12.89694 -12.78340 -12.61418 -12.54862 -12.34993 -12.23473 -12.19258 -11.97387 -11.75952 -11.66271 -11.24231 -10.90683 -10.57793 -9.80190 -9.12625 -8.14448 -6.28941 1.13342 1.39263 1.39837 1.44902 1.52326 1.72669 2.39074 2.39894 3.14582 3.35418 3.59867 3.65259 3.73807 3.98510 4.15492 4.26688 4.34001 4.47947 4.61611 4.67181 4.77691 4.83949 4.86592 5.08061 5.16349 5.23575 5.25866 5.49550 5.54893 5.59447 5.64715 5.84849 6.05177 6.20411 6.30749 6.64012 6.90897 6.93273 7.13774 7.40707 8.91785 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.024078 B = 0.004316 C = 0.003969 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1162.601061 B = 6485.972774 C = 7052.828388 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.111 4.111 2 C 0.209 3.791 3 H -0.032 1.032 4 C -0.539 4.539 5 H 0.060 0.940 6 C 0.011 3.989 7 N -0.918 5.918 8 Si 0.963 3.037 9 H -0.264 1.264 10 H -0.274 1.274 11 H -0.286 1.286 12 N -0.644 5.644 13 C 0.051 3.949 14 H 0.087 0.913 15 C -0.109 4.109 16 C 0.100 3.900 17 N -0.611 5.611 18 C 0.136 3.864 19 C -0.123 4.123 20 C 0.493 3.507 21 O -0.552 6.552 22 O -0.511 6.511 23 C 0.477 3.523 24 O -0.581 6.581 25 H 0.025 0.975 26 H 0.053 0.947 27 H 0.036 0.964 28 H 0.262 0.738 29 H 0.331 0.669 30 H 0.108 0.892 31 H 0.111 0.889 32 H 0.121 0.879 33 H 0.082 0.918 34 H 0.111 0.889 35 H 0.052 0.948 36 H 0.099 0.901 37 H 0.147 0.853 38 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.186 -1.754 21.308 22.555 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.101 3.899 3 H -0.014 1.014 4 C -0.577 4.577 5 H 0.078 0.922 6 C -0.189 4.189 7 N -0.557 5.557 8 Si 0.789 3.211 9 H -0.188 1.188 10 H -0.200 1.200 11 H -0.212 1.212 12 N -0.274 5.274 13 C -0.063 4.063 14 H 0.105 0.895 15 C -0.147 4.147 16 C -0.021 4.021 17 N -0.345 5.345 18 C 0.013 3.987 19 C -0.162 4.162 20 C 0.337 3.663 21 O -0.443 6.443 22 O -0.324 6.324 23 C 0.264 3.736 24 O -0.459 6.459 25 H 0.044 0.956 26 H 0.072 0.928 27 H 0.056 0.944 28 H 0.071 0.929 29 H 0.149 0.851 30 H 0.127 0.873 31 H 0.129 0.871 32 H 0.139 0.861 33 H 0.100 0.900 34 H 0.129 0.871 35 H 0.070 0.930 36 H 0.117 0.883 37 H 0.164 0.836 38 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 6.551 -1.636 20.769 21.839 hybrid contribution 1.715 0.939 -1.580 2.514 sum 8.265 -0.697 19.189 20.905 Atomic orbital electron populations 1.21515 0.96942 0.99333 0.99144 1.19006 0.93158 0.91006 0.86727 1.01396 1.21600 1.31732 1.12639 0.91738 0.92229 1.25767 0.95206 0.95668 1.02209 1.70049 1.37559 1.24038 1.24048 0.85426 0.78227 0.78500 0.78979 1.18817 1.19969 1.21212 1.61044 1.31129 1.30091 1.05150 1.22591 0.93252 0.95044 0.95457 0.89477 1.22709 0.95870 1.02794 0.93308 1.22474 0.92185 0.87982 0.99437 1.48398 1.14643 1.33524 1.37977 1.21068 0.82249 0.97796 0.97558 1.21687 0.90963 1.00731 1.02810 1.23352 0.91959 0.75663 0.75344 1.90749 1.45688 1.57716 1.50188 1.84491 1.39733 1.53364 1.54861 1.22634 0.89590 0.82557 0.78833 1.90697 1.80244 1.30625 1.44347 0.95582 0.92778 0.94448 0.92910 0.85147 0.87338 0.87098 0.86072 0.89990 0.87113 0.92966 0.88254 0.83568 0.70866 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.11 -5.61 9.18 71.98 0.66 -4.94 16 2 C 0.21 11.13 2.46 44.17 0.11 11.24 16 3 H -0.03 -1.98 7.26 -2.38 -0.02 -2.00 16 4 C -0.54 -30.86 8.59 25.60 0.22 -30.64 16 5 H 0.06 3.31 7.62 -2.91 -0.02 3.29 16 6 C 0.01 0.61 5.30 84.65 0.45 1.06 16 7 N -0.92 -55.58 11.32 21.45 0.24 -55.34 16 8 Si 0.96 45.29 29.54 68.60 2.03 47.32 16 9 H -0.26 -11.90 7.11 99.48 0.71 -11.19 16 10 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 11 H -0.29 -13.41 7.11 99.48 0.71 -12.71 16 12 N -0.64 -26.65 6.10 -473.33 -2.89 -29.54 16 13 C 0.05 1.71 3.02 44.91 0.14 1.85 16 14 H 0.09 3.25 7.20 -2.38 -0.02 3.23 16 15 C -0.11 -2.12 6.89 31.65 0.22 -1.90 16 16 C 0.10 1.62 7.35 86.83 0.64 2.25 16 17 N -0.61 -15.53 2.93 -817.99 -2.40 -17.93 16 18 C 0.14 3.13 5.23 86.38 0.45 3.58 16 19 C -0.12 -2.14 6.14 29.85 0.18 -1.95 16 20 C 0.49 9.35 8.33 71.24 0.59 9.94 16 21 O -0.55 -14.45 16.74 21.97 0.37 -14.08 16 22 O -0.51 -6.78 13.42 -51.38 -0.69 -7.47 16 23 C 0.48 17.71 7.26 87.90 0.64 18.34 16 24 O -0.58 -28.58 17.08 -3.03 -0.05 -28.63 16 25 H 0.03 1.15 7.45 -2.38 -0.02 1.13 16 26 H 0.05 3.04 6.07 -2.39 -0.01 3.03 16 27 H 0.04 1.80 8.14 -2.39 -0.02 1.78 16 28 H 0.26 14.98 8.31 -92.71 -0.77 14.21 16 29 H 0.33 13.81 7.98 -89.70 -0.72 13.10 16 30 H 0.11 1.53 8.14 -2.39 -0.02 1.51 16 31 H 0.11 2.04 8.09 -2.39 -0.02 2.02 16 32 H 0.12 0.93 8.14 -2.39 -0.02 0.91 16 33 H 0.08 1.26 8.14 -2.39 -0.02 1.24 16 34 H 0.11 2.03 8.10 -2.39 -0.02 2.01 16 35 H 0.05 1.63 7.88 -2.39 -0.02 1.61 16 36 H 0.10 2.03 8.14 -2.38 -0.02 2.01 16 37 H 0.15 1.43 8.14 -2.39 -0.02 1.41 16 38 H 0.43 2.15 9.10 -74.06 -0.67 1.48 16 Total: -1.00 -81.07 322.09 0.60 -80.46 By element: Atomic # 1 Polarization: 16.66 SS G_CDS: -0.30 Total: 16.36 kcal Atomic # 6 Polarization: 4.55 SS G_CDS: 4.30 Total: 8.84 kcal Atomic # 7 Polarization: -97.76 SS G_CDS: -5.04 Total: -102.80 kcal Atomic # 8 Polarization: -49.81 SS G_CDS: -0.37 Total: -50.19 kcal Atomic # 14 Polarization: 45.29 SS G_CDS: 2.03 Total: 47.32 kcal Total: -81.07 0.60 -80.46 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833516099.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -71.236 kcal (2) G-P(sol) polarization free energy of solvation -81.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.602 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.465 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.701 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds