Wall clock time and date at job start Mon Mar 30 2020 02:23:20 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47081 * 2 1 4 4 C 1.50700 * 109.47410 * 120.00071 * 2 1 3 5 5 H 1.07990 * 120.00516 * 119.99519 * 4 2 1 6 6 C 1.37884 * 119.99809 * 300.00083 * 4 2 1 7 7 N 1.31520 * 119.99886 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00301 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47091 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46992 * 119.99706 * 8 6 4 11 11 H 1.48500 * 109.47394 * 239.99926 * 8 6 4 12 12 N 1.46898 * 109.47140 * 239.99594 * 2 1 3 13 13 C 1.46906 * 110.99888 * 84.99977 * 12 2 1 14 14 H 1.08994 * 110.43296 * 327.54088 * 13 12 2 15 15 C 1.54626 * 110.48782 * 204.99812 * 13 12 2 16 16 C 1.54473 * 101.76699 * 216.52270 * 15 13 12 17 17 N 1.46761 * 105.47263 * 25.42093 * 16 15 13 18 18 C 1.46500 * 124.35183 * 162.96178 * 17 16 15 19 19 C 1.53001 * 109.47203 * 89.99928 * 18 17 16 20 20 C 1.50699 * 109.47544 * 180.02562 * 19 18 17 21 21 O 1.20829 * 119.99604 * 359.97438 * 20 19 18 22 22 O 1.34223 * 120.00503 * 179.97438 * 20 19 18 23 23 C 1.34417 * 111.30116 * 342.97941 * 17 16 15 24 24 O 1.21284 * 124.94469 * 180.40988 * 23 17 16 25 25 H 1.08994 * 109.46950 * 60.00641 * 1 2 3 26 26 H 1.09006 * 109.46704 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47119 * 299.99707 * 1 2 3 28 28 H 0.97000 * 120.00205 * 180.02562 * 7 6 4 29 29 H 1.00902 * 111.00533 * 321.04383 * 12 2 1 30 30 H 1.09008 * 110.96966 * 334.64598 * 15 13 12 31 31 H 1.09004 * 110.96675 * 98.40463 * 15 13 12 32 32 H 1.09001 * 110.24291 * 144.41537 * 16 15 13 33 33 H 1.08997 * 110.25026 * 266.32790 * 16 15 13 34 34 H 1.08997 * 109.47269 * 209.99592 * 18 17 16 35 35 H 1.09000 * 109.47350 * 329.99479 * 18 17 16 36 36 H 1.09004 * 109.47059 * 299.99710 * 19 18 17 37 37 H 1.09000 * 109.47334 * 59.99541 * 19 18 17 38 38 H 0.96705 * 116.99995 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.1465 -2.2869 3.6039 10 1 3.1466 -0.1872 4.8164 11 1 1.1661 -1.5865 4.8161 12 7 2.0197 -0.6926 -1.1994 13 6 2.0824 0.2225 -2.3469 14 1 1.2903 0.9684 -2.2826 15 6 1.9779 -0.5651 -3.6735 16 6 2.9384 0.2279 -4.5871 17 7 3.8955 0.8744 -3.6817 18 6 5.1843 1.4306 -4.1013 19 6 5.0032 2.8988 -4.4919 20 6 6.3288 3.4708 -4.9241 21 8 7.3170 2.7756 -4.9197 22 8 6.4116 4.7525 -5.3140 23 6 3.4380 0.8904 -2.4179 24 8 4.0263 1.3704 -1.4722 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7087 1.1613 3.4844 29 1 1.4496 -1.4981 -1.4100 30 1 2.3200 -1.5921 -3.5454 31 1 0.9599 -0.5403 -4.0626 32 1 3.4585 -0.4487 -5.2652 33 1 2.3869 0.9783 -5.1536 34 1 5.8961 1.3586 -3.2791 35 1 5.5603 0.8705 -4.9575 36 1 4.2914 2.9709 -5.3143 37 1 4.6272 3.4589 -3.6358 38 1 7.2833 5.0744 -5.5820 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833516100.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:20 Heat of formation + Delta-G solvation = -119.993063 kcal Electronic energy + Delta-G solvation = -20951.453967 eV Core-core repulsion = 17600.976514 eV Total energy + Delta-G solvation = -3350.477453 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -40.60061 -39.99360 -36.49498 -36.05683 -35.82091 -33.61917 -31.97885 -29.83232 -28.01460 -25.90897 -25.10449 -24.54336 -21.85600 -21.09040 -20.29273 -18.92214 -18.25818 -17.12291 -16.55180 -16.32332 -16.19776 -15.68843 -15.02769 -14.66589 -14.04120 -13.73440 -13.51285 -13.46528 -13.34059 -12.99827 -12.38316 -12.22502 -12.13852 -11.94442 -11.78338 -11.43439 -11.38803 -11.04897 -10.87299 -10.84683 -10.64622 -10.45448 -10.08820 -9.80411 -9.40893 -8.84396 -8.62550 -8.26802 -7.31556 -5.89638 -3.91152 1.96920 2.60680 3.04042 3.37693 3.38604 3.46074 3.51808 4.51274 4.55252 4.58790 4.65931 4.86241 4.89915 5.08874 5.17559 5.29849 5.42961 5.45366 5.53411 5.63644 5.73086 5.81256 5.93236 6.13658 6.24472 6.65806 6.70119 6.84132 7.10077 7.29333 7.39703 7.63607 7.76272 7.94164 8.31713 8.53089 8.62639 8.67863 9.14237 9.72728 11.18181 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.023324 B = 0.004255 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.196691 B = 6578.699630 C = 7222.903008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C 0.210 3.790 3 H 0.043 0.957 4 C -0.487 4.487 5 H 0.062 0.938 6 C 0.054 3.946 7 N -0.898 5.898 8 Si 0.897 3.103 9 H -0.273 1.273 10 H -0.285 1.285 11 H -0.287 1.287 12 N -0.664 5.664 13 C 0.057 3.943 14 H 0.076 0.924 15 C -0.137 4.137 16 C 0.109 3.891 17 N -0.632 5.632 18 C 0.142 3.858 19 C -0.134 4.134 20 C 0.486 3.514 21 O -0.516 6.516 22 O -0.518 6.518 23 C 0.528 3.472 24 O -0.498 6.498 25 H 0.003 0.997 26 H 0.028 0.972 27 H 0.090 0.910 28 H 0.258 0.742 29 H 0.333 0.667 30 H 0.090 0.910 31 H 0.085 0.915 32 H 0.075 0.925 33 H 0.066 0.934 34 H 0.091 0.909 35 H 0.085 0.915 36 H 0.107 0.893 37 H 0.112 0.888 38 H 0.410 0.590 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.383 3.040 -19.589 20.110 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C 0.103 3.897 3 H 0.061 0.939 4 C -0.526 4.526 5 H 0.080 0.920 6 C -0.146 4.146 7 N -0.539 5.539 8 Si 0.725 3.275 9 H -0.198 1.198 10 H -0.212 1.212 11 H -0.213 1.213 12 N -0.296 5.296 13 C -0.057 4.057 14 H 0.093 0.907 15 C -0.175 4.175 16 C -0.014 4.014 17 N -0.369 5.369 18 C 0.019 3.981 19 C -0.173 4.173 20 C 0.328 3.672 21 O -0.404 6.404 22 O -0.330 6.330 23 C 0.314 3.686 24 O -0.369 6.369 25 H 0.022 0.978 26 H 0.047 0.953 27 H 0.109 0.891 28 H 0.068 0.932 29 H 0.151 0.849 30 H 0.108 0.892 31 H 0.104 0.896 32 H 0.093 0.907 33 H 0.085 0.915 34 H 0.110 0.890 35 H 0.103 0.897 36 H 0.126 0.874 37 H 0.130 0.870 38 H 0.269 0.731 Dipole moment (debyes) X Y Z Total from point charges 4.239 3.174 -18.616 19.355 hybrid contribution -0.117 0.040 0.377 0.397 sum 4.122 3.214 -18.239 18.973 Atomic orbital electron populations 1.22464 1.00700 0.99192 1.00520 1.19294 0.89260 0.95126 0.86025 0.93874 1.21116 1.29793 1.12210 0.89513 0.92012 1.24921 0.95424 0.95228 0.98980 1.69890 1.37615 1.23276 1.23091 0.86453 0.78415 0.79654 0.82934 1.19786 1.21176 1.21305 1.60662 1.58457 1.08169 1.02267 1.22081 0.94566 0.96717 0.92340 0.90672 1.22843 0.99865 1.00281 0.94488 1.21978 0.90709 0.96017 0.92727 1.48274 1.18882 1.60335 1.09411 1.20987 0.85060 0.90116 1.01928 1.21844 0.92481 0.98486 1.04508 1.23365 0.91585 0.79371 0.72872 1.90744 1.38930 1.60383 1.50373 1.84547 1.41098 1.29314 1.78019 1.21109 0.87802 0.78266 0.81428 1.90743 1.62345 1.45091 1.38711 0.97774 0.95261 0.89093 0.93239 0.84884 0.89183 0.89596 0.90677 0.91549 0.89019 0.89691 0.87436 0.86967 0.73138 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -4.03 8.92 37.16 0.33 -3.69 16 2 C 0.21 5.41 2.38 -68.87 -0.16 5.25 16 3 H 0.04 1.28 7.40 -51.93 -0.38 0.89 16 4 C -0.49 -14.02 8.84 -34.44 -0.30 -14.32 16 5 H 0.06 1.80 7.81 -52.49 -0.41 1.39 16 6 C 0.05 1.57 5.30 -17.81 -0.09 1.48 16 7 N -0.90 -26.56 11.32 55.43 0.63 -25.93 16 8 Si 0.90 22.37 29.54 -169.99 -5.02 17.35 16 9 H -0.27 -6.75 7.11 56.52 0.40 -6.35 16 10 H -0.29 -7.15 7.11 56.52 0.40 -6.75 16 11 H -0.29 -6.99 7.11 56.52 0.40 -6.59 16 12 N -0.66 -13.98 6.05 -100.97 -0.61 -14.59 16 13 C 0.06 0.98 3.02 -67.72 -0.20 0.78 16 14 H 0.08 1.32 7.20 -51.93 -0.37 0.95 16 15 C -0.14 -1.54 6.59 -25.10 -0.17 -1.71 16 16 C 0.11 1.05 7.35 -3.13 -0.02 1.03 16 17 N -0.63 -8.55 2.93 -172.42 -0.51 -9.05 16 18 C 0.14 1.71 5.22 -4.04 -0.02 1.69 16 19 C -0.13 -1.34 6.13 -27.88 -0.17 -1.51 16 20 C 0.49 5.10 8.33 36.01 0.30 5.40 16 21 O -0.52 -6.93 16.74 -18.75 -0.31 -7.24 16 22 O -0.52 -4.20 13.42 -39.24 -0.53 -4.73 16 23 C 0.53 9.90 7.63 -10.86 -0.08 9.82 16 24 O -0.50 -11.97 17.10 5.55 0.09 -11.88 16 25 H 0.00 0.07 7.50 -51.93 -0.39 -0.32 16 26 H 0.03 0.65 8.13 -51.93 -0.42 0.23 16 27 H 0.09 2.43 6.07 -51.93 -0.32 2.12 16 28 H 0.26 7.26 8.31 -40.82 -0.34 6.92 16 29 H 0.33 6.27 8.12 -39.29 -0.32 5.95 16 30 H 0.09 1.02 8.04 -51.92 -0.42 0.60 16 31 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 32 H 0.07 0.57 8.14 -51.93 -0.42 0.15 16 33 H 0.07 0.50 8.14 -51.93 -0.42 0.08 16 34 H 0.09 1.35 7.89 -51.93 -0.41 0.94 16 35 H 0.08 0.85 8.10 -51.93 -0.42 0.43 16 36 H 0.11 0.81 8.14 -51.93 -0.42 0.38 16 37 H 0.11 1.27 8.14 -51.93 -0.42 0.84 16 38 H 0.41 1.59 9.10 45.56 0.41 2.00 16 LS Contribution 322.52 15.07 4.86 4.86 Total: -1.00 -36.13 322.52 -6.69 -42.82 By element: Atomic # 1 Polarization: 8.90 SS G_CDS: -4.70 Total: 4.21 kcal Atomic # 6 Polarization: 4.79 SS G_CDS: -0.60 Total: 4.19 kcal Atomic # 7 Polarization: -49.09 SS G_CDS: -0.49 Total: -49.58 kcal Atomic # 8 Polarization: -23.10 SS G_CDS: -0.75 Total: -23.85 kcal Atomic # 14 Polarization: 22.37 SS G_CDS: -5.02 Total: 17.35 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -36.13 -6.69 -42.82 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833516100.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -77.173 kcal (2) G-P(sol) polarization free energy of solvation -36.131 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.690 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.820 kcal (6) G-S(sol) free energy of system = (1) + (5) -119.993 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds