Wall clock time and date at job start Mon Mar 30 2020 02:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08994 * 109.47081 * 2 1 4 4 C 1.50700 * 109.47410 * 120.00071 * 2 1 3 5 5 H 1.07990 * 120.00516 * 119.99519 * 4 2 1 6 6 C 1.37884 * 119.99809 * 300.00083 * 4 2 1 7 7 N 1.31520 * 119.99886 * 0.02562 * 6 4 2 8 8 Si 1.86793 * 120.00301 * 179.97438 * 6 4 2 9 9 H 1.48503 * 109.47091 * 0.02562 * 8 6 4 10 10 H 1.48496 * 109.46992 * 119.99706 * 8 6 4 11 11 H 1.48500 * 109.47394 * 239.99926 * 8 6 4 12 12 N 1.46898 * 109.47140 * 239.99594 * 2 1 3 13 13 C 1.46906 * 110.99888 * 84.99977 * 12 2 1 14 14 H 1.08994 * 110.43296 * 327.54088 * 13 12 2 15 15 C 1.54626 * 110.48782 * 204.99812 * 13 12 2 16 16 C 1.54473 * 101.76699 * 216.52270 * 15 13 12 17 17 N 1.46761 * 105.47263 * 25.42093 * 16 15 13 18 18 C 1.46500 * 124.35183 * 162.96178 * 17 16 15 19 19 C 1.53001 * 109.47203 * 89.99928 * 18 17 16 20 20 C 1.50699 * 109.47544 * 180.02562 * 19 18 17 21 21 O 1.20829 * 119.99604 * 359.97438 * 20 19 18 22 22 O 1.34223 * 120.00503 * 179.97438 * 20 19 18 23 23 C 1.34417 * 111.30116 * 342.97941 * 17 16 15 24 24 O 1.21284 * 124.94469 * 180.40988 * 23 17 16 25 25 H 1.08994 * 109.46950 * 60.00641 * 1 2 3 26 26 H 1.09006 * 109.46704 * 180.02562 * 1 2 3 27 27 H 1.08997 * 109.47119 * 299.99707 * 1 2 3 28 28 H 0.97000 * 120.00205 * 180.02562 * 7 6 4 29 29 H 1.00902 * 111.00533 * 321.04383 * 12 2 1 30 30 H 1.09008 * 110.96966 * 334.64598 * 15 13 12 31 31 H 1.09004 * 110.96675 * 98.40463 * 15 13 12 32 32 H 1.09001 * 110.24291 * 144.41537 * 16 15 13 33 33 H 1.08997 * 110.25026 * 266.32790 * 16 15 13 34 34 H 1.08997 * 109.47269 * 209.99592 * 18 17 16 35 35 H 1.09000 * 109.47350 * 329.99479 * 18 17 16 36 36 H 1.09004 * 109.47059 * 299.99710 * 19 18 17 37 37 H 1.09000 * 109.47334 * 59.99541 * 19 18 17 38 38 H 0.96705 * 116.99995 * 179.97438 * 22 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0276 0.0000 4 6 2.0324 -0.7104 1.2304 5 1 2.6532 -1.5885 1.1314 6 6 1.6993 -0.2393 2.4828 7 7 0.9427 0.8297 2.6034 8 14 2.3214 -1.1202 4.0080 9 1 3.1465 -2.2869 3.6039 10 1 3.1466 -0.1872 4.8164 11 1 1.1661 -1.5865 4.8161 12 7 2.0197 -0.6926 -1.1994 13 6 2.0824 0.2225 -2.3469 14 1 1.2903 0.9684 -2.2826 15 6 1.9779 -0.5651 -3.6735 16 6 2.9384 0.2279 -4.5871 17 7 3.8955 0.8744 -3.6817 18 6 5.1843 1.4306 -4.1013 19 6 5.0032 2.8988 -4.4919 20 6 6.3288 3.4708 -4.9241 21 8 7.3170 2.7756 -4.9197 22 8 6.4116 4.7525 -5.3140 23 6 3.4380 0.8904 -2.4179 24 8 4.0263 1.3704 -1.4722 25 1 -0.3633 0.5137 -0.8900 26 1 -0.3633 -1.0277 0.0005 27 1 -0.3633 0.5138 0.8900 28 1 0.7087 1.1613 3.4844 29 1 1.4496 -1.4981 -1.4100 30 1 2.3200 -1.5921 -3.5454 31 1 0.9599 -0.5403 -4.0626 32 1 3.4585 -0.4487 -5.2652 33 1 2.3869 0.9783 -5.1536 34 1 5.8961 1.3586 -3.2791 35 1 5.5603 0.8705 -4.9575 36 1 4.2914 2.9709 -5.3143 37 1 4.6272 3.4589 -3.6358 38 1 7.2833 5.0744 -5.5820 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833516100.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:19 Heat of formation + Delta-G solvation = -149.099062 kcal Electronic energy + Delta-G solvation = -20952.716098 eV Core-core repulsion = 17600.976514 eV Total energy + Delta-G solvation = -3351.739584 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.61331 -41.07774 -37.69258 -37.44272 -37.09936 -35.07678 -33.65384 -31.16352 -29.43463 -27.30923 -27.10413 -25.66402 -22.86615 -22.28049 -21.97801 -20.14725 -19.13751 -18.44815 -17.99861 -17.60468 -17.18146 -16.90954 -16.68667 -16.30852 -15.32364 -15.20495 -14.87084 -14.63112 -14.35918 -14.27861 -13.99148 -13.68603 -13.31897 -13.25193 -13.02238 -12.82582 -12.77110 -12.59322 -12.34120 -12.26556 -12.13847 -11.95137 -11.72261 -11.71853 -11.08947 -10.71738 -10.46633 -9.73057 -8.99785 -8.08707 -6.18368 1.14452 1.39145 1.41589 1.53619 1.63746 1.74190 2.43357 2.45043 3.20110 3.47666 3.61814 3.70305 3.76933 3.94157 4.18817 4.30137 4.36052 4.48390 4.56867 4.67686 4.76952 4.78525 4.86383 4.90468 5.05747 5.08958 5.20756 5.46626 5.56399 5.65648 5.71783 5.84207 6.12374 6.29920 6.62924 6.85504 6.94583 6.96218 7.31257 7.50295 8.97559 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.023324 B = 0.004255 C = 0.003876 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1200.196691 B = 6578.699630 C = 7222.903008 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.219 3.781 3 H -0.006 1.006 4 C -0.511 4.511 5 H 0.050 0.950 6 C 0.006 3.994 7 N -0.923 5.923 8 Si 0.959 3.041 9 H -0.270 1.270 10 H -0.287 1.287 11 H -0.273 1.273 12 N -0.674 5.674 13 C 0.049 3.951 14 H 0.070 0.930 15 C -0.121 4.121 16 C 0.106 3.894 17 N -0.619 5.619 18 C 0.140 3.860 19 C -0.127 4.127 20 C 0.494 3.506 21 O -0.550 6.550 22 O -0.512 6.512 23 C 0.513 3.487 24 O -0.571 6.571 25 H 0.031 0.969 26 H 0.040 0.960 27 H 0.058 0.942 28 H 0.260 0.740 29 H 0.346 0.654 30 H 0.092 0.908 31 H 0.121 0.879 32 H 0.109 0.891 33 H 0.102 0.898 34 H 0.053 0.947 35 H 0.114 0.886 36 H 0.144 0.856 37 H 0.095 0.905 38 H 0.429 0.571 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.690 2.220 -22.326 22.597 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C 0.111 3.889 3 H 0.012 0.988 4 C -0.550 4.550 5 H 0.068 0.932 6 C -0.192 4.192 7 N -0.564 5.564 8 Si 0.785 3.215 9 H -0.194 1.194 10 H -0.213 1.213 11 H -0.198 1.198 12 N -0.307 5.307 13 C -0.065 4.065 14 H 0.087 0.913 15 C -0.159 4.159 16 C -0.016 4.016 17 N -0.354 5.354 18 C 0.017 3.983 19 C -0.166 4.166 20 C 0.338 3.662 21 O -0.442 6.442 22 O -0.326 6.326 23 C 0.300 3.700 24 O -0.449 6.449 25 H 0.050 0.950 26 H 0.059 0.941 27 H 0.077 0.923 28 H 0.069 0.931 29 H 0.166 0.834 30 H 0.111 0.889 31 H 0.139 0.861 32 H 0.127 0.873 33 H 0.120 0.880 34 H 0.072 0.928 35 H 0.132 0.868 36 H 0.162 0.838 37 H 0.113 0.887 38 H 0.291 0.709 Dipole moment (debyes) X Y Z Total from point charges 3.535 2.348 -21.445 21.861 hybrid contribution 0.144 0.361 1.115 1.181 sum 3.679 2.710 -20.330 20.837 Atomic orbital electron populations 1.22217 0.99115 0.99729 1.00284 1.18920 0.90259 0.92430 0.87317 0.98817 1.21459 1.29957 1.12182 0.91367 0.93199 1.25715 0.95614 0.95961 1.01901 1.70022 1.38332 1.24308 1.23748 0.85488 0.78186 0.78482 0.79333 1.19439 1.21294 1.19821 1.60364 1.58565 1.09155 1.02580 1.22220 0.93560 0.96851 0.93858 0.91281 1.22892 1.02556 0.99603 0.90870 1.22402 0.89964 0.97217 0.91996 1.48312 1.19543 1.59069 1.08427 1.21049 0.83689 0.92144 1.01385 1.21730 0.93158 0.96585 1.05086 1.23329 0.91098 0.79733 0.72081 1.90740 1.39983 1.61390 1.52043 1.84499 1.42753 1.27913 1.77396 1.21541 0.88375 0.77776 0.82301 1.90695 1.64333 1.48350 1.41480 0.94956 0.94127 0.92280 0.93133 0.83423 0.88897 0.86105 0.87296 0.87985 0.92846 0.86806 0.83802 0.88655 0.70873 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -7.36 8.92 71.98 0.64 -6.72 16 2 C 0.22 11.66 2.38 44.17 0.11 11.76 16 3 H -0.01 -0.39 7.40 -2.39 -0.02 -0.40 16 4 C -0.51 -30.30 8.84 25.60 0.23 -30.08 16 5 H 0.05 2.99 7.81 -2.92 -0.02 2.97 16 6 C 0.01 0.33 5.30 84.66 0.45 0.78 16 7 N -0.92 -56.15 11.32 21.45 0.24 -55.91 16 8 Si 0.96 46.74 29.54 68.60 2.03 48.76 16 9 H -0.27 -12.88 7.11 99.48 0.71 -12.18 16 10 H -0.29 -13.94 7.11 99.48 0.71 -13.23 16 11 H -0.27 -12.60 7.11 99.48 0.71 -11.90 16 12 N -0.67 -28.64 6.05 -473.35 -2.86 -31.50 16 13 C 0.05 1.65 3.02 44.91 0.14 1.78 16 14 H 0.07 2.40 7.20 -2.39 -0.02 2.38 16 15 C -0.12 -2.28 6.59 31.65 0.21 -2.07 16 16 C 0.11 1.54 7.35 86.83 0.64 2.18 16 17 N -0.62 -15.75 2.93 -818.01 -2.40 -18.15 16 18 C 0.14 3.23 5.22 86.38 0.45 3.68 16 19 C -0.13 -2.35 6.13 29.85 0.18 -2.16 16 20 C 0.49 9.73 8.33 71.24 0.59 10.32 16 21 O -0.55 -14.46 16.74 21.96 0.37 -14.09 16 22 O -0.51 -7.31 13.42 -51.35 -0.69 -8.00 16 23 C 0.51 19.62 7.63 87.90 0.67 20.29 16 24 O -0.57 -29.39 17.10 -3.04 -0.05 -29.44 16 25 H 0.03 1.31 7.50 -2.39 -0.02 1.29 16 26 H 0.04 1.80 8.13 -2.38 -0.02 1.78 16 27 H 0.06 3.22 6.07 -2.39 -0.01 3.21 16 28 H 0.26 14.95 8.31 -92.71 -0.77 14.18 16 29 H 0.35 12.72 8.12 -89.69 -0.73 12.00 16 30 H 0.09 1.74 8.04 -2.38 -0.02 1.72 16 31 H 0.12 1.50 8.14 -2.39 -0.02 1.48 16 32 H 0.11 1.00 8.14 -2.39 -0.02 0.98 16 33 H 0.10 0.90 8.14 -2.39 -0.02 0.88 16 34 H 0.05 1.66 7.89 -2.39 -0.02 1.64 16 35 H 0.11 1.98 8.10 -2.39 -0.02 1.96 16 36 H 0.14 1.60 8.14 -2.39 -0.02 1.58 16 37 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 38 H 0.43 2.48 9.10 -74.05 -0.67 1.80 16 Total: -1.00 -84.90 322.52 0.62 -84.28 By element: Atomic # 1 Polarization: 14.59 SS G_CDS: -0.32 Total: 14.28 kcal Atomic # 6 Polarization: 5.46 SS G_CDS: 4.30 Total: 9.77 kcal Atomic # 7 Polarization: -100.53 SS G_CDS: -5.02 Total: -105.55 kcal Atomic # 8 Polarization: -51.16 SS G_CDS: -0.37 Total: -51.53 kcal Atomic # 14 Polarization: 46.74 SS G_CDS: 2.03 Total: 48.76 kcal Total: -84.90 0.62 -84.28 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833516100.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.823 kcal (2) G-P(sol) polarization free energy of solvation -84.897 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -149.720 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.621 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -84.276 kcal (6) G-S(sol) free energy of system = (1) + (5) -149.099 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds