Wall clock time and date at job start Mon Mar 30 2020 02:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 110.64202 * 2 1 4 4 C 1.54318 * 110.71741 * 236.85388 * 2 1 3 5 5 N 1.47025 * 107.27582 * 263.83333 * 4 2 1 6 6 C 1.34774 * 125.65208 * 181.02572 * 5 4 2 7 7 O 1.21595 * 119.99870 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00189 * 179.72572 * 6 5 4 9 9 C 1.46497 * 120.00057 * 180.27880 * 8 6 5 10 10 C 1.53000 * 109.46915 * 179.97438 * 9 8 6 11 11 C 1.50700 * 109.47098 * 179.97438 * 10 9 8 12 12 H 1.08005 * 120.00191 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00325 * 179.97438 * 11 10 9 14 14 N 1.31509 * 119.99750 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00261 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47146 * 89.99941 * 15 13 11 17 17 H 1.48504 * 109.47366 * 210.00256 * 15 13 11 18 18 H 1.48500 * 109.47328 * 330.00148 * 15 13 11 19 19 C 1.47428 * 108.69678 * 1.28631 * 5 4 2 20 20 C 1.55127 * 104.72741 * 335.55607 * 19 5 4 21 21 H 1.09001 * 111.18964 * 279.19385 * 20 19 5 22 22 C 1.50688 * 110.94067 * 155.28779 * 20 19 5 23 23 O 1.20825 * 120.00218 * 218.02549 * 22 20 19 24 24 O 1.34229 * 120.00279 * 38.03189 * 22 20 19 25 25 H 1.08997 * 109.47626 * 190.73914 * 1 2 3 26 26 H 1.09005 * 109.46904 * 310.73888 * 1 2 3 27 27 H 1.09001 * 109.47176 * 70.73313 * 1 2 3 28 28 H 1.09008 * 109.88002 * 144.41580 * 4 2 1 29 29 H 1.09001 * 110.01478 * 23.32190 * 4 2 1 30 30 H 0.96998 * 119.99611 * 0.26816 * 8 6 5 31 31 H 1.09002 * 109.46649 * 299.99180 * 9 8 6 32 32 H 1.08993 * 109.47864 * 59.99458 * 9 8 6 33 33 H 1.09002 * 109.46911 * 299.99164 * 10 9 8 34 34 H 1.09002 * 109.47576 * 59.99648 * 10 9 8 35 35 H 0.97002 * 120.00069 * 180.02562 * 14 13 11 36 36 H 1.08997 * 110.36213 * 94.48785 * 19 5 4 37 37 H 1.08997 * 110.36515 * 216.80495 * 19 5 4 38 38 H 0.96696 * 117.00435 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0199 0.0000 4 6 2.0759 -0.7892 -1.2085 5 7 2.3715 -2.1520 -0.7426 6 6 2.8848 -3.1454 -1.4950 7 8 3.1440 -2.9489 -2.6666 8 7 3.1165 -4.3548 -0.9472 9 6 3.6801 -5.4328 -1.7635 10 6 3.8428 -6.6898 -0.9065 11 6 4.4221 -7.7989 -1.7463 12 1 4.6517 -7.6246 -2.7872 13 6 4.6600 -9.0359 -1.1857 14 7 4.3809 -9.2480 0.0818 15 14 5.3787 -10.4105 -2.2266 16 1 6.8611 -10.3664 -2.1496 17 1 4.8954 -11.7199 -1.7195 18 1 4.9510 -10.2379 -3.6381 19 6 2.0073 -2.2536 0.6824 20 6 2.0789 -0.7975 1.2125 21 1 3.1060 -0.5098 1.4366 22 6 1.1954 -0.6201 2.4203 23 8 0.5754 0.4061 2.5698 24 8 1.0974 -1.6020 3.3303 25 1 -0.3634 -1.0096 0.1915 26 1 -0.3633 0.6707 0.7787 27 1 -0.3633 0.3391 -0.9701 28 1 2.9869 -0.3181 -1.5780 29 1 1.3282 -0.8224 -2.0010 30 1 2.9101 -4.5114 -0.0125 31 1 3.0108 -5.6452 -2.5972 32 1 4.6532 -5.1270 -2.1477 33 1 4.5124 -6.4771 -0.0731 34 1 2.8699 -6.9959 -0.5219 35 1 4.5486 -10.1182 0.4763 36 1 0.9973 -2.6493 0.7884 37 1 2.7206 -2.8852 1.2120 38 1 0.5182 -1.4423 4.0879 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833619939.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:56 Heat of formation + Delta-G solvation = -126.658605 kcal Electronic energy + Delta-G solvation = -20744.001547 eV Core-core repulsion = 17393.235054 eV Total energy + Delta-G solvation = -3350.766493 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.16221 -39.76895 -37.79060 -36.45664 -34.82628 -33.11149 -32.49213 -30.43613 -29.51309 -26.81054 -25.12253 -24.21517 -22.53722 -21.04626 -20.06288 -19.70055 -18.29692 -17.95064 -17.14722 -16.55845 -16.21110 -15.79003 -15.22151 -14.79873 -14.49283 -13.97523 -13.94320 -13.50392 -13.46887 -13.12254 -12.89122 -12.64540 -12.42844 -12.25849 -11.82270 -11.51312 -11.28887 -11.16963 -11.11729 -11.02627 -10.68054 -10.62170 -10.31905 -9.95844 -9.56194 -9.26171 -8.79196 -8.46263 -8.21634 -6.08697 -4.11273 1.81185 2.54698 2.89244 3.30271 3.36416 3.40988 3.50906 3.79267 4.13140 4.34110 4.46377 4.50919 4.79911 4.89131 5.02949 5.10775 5.28552 5.31203 5.47256 5.50045 5.63226 5.71436 5.78748 5.94580 6.11872 6.22150 6.38516 6.39647 6.76912 6.98042 7.21554 7.53623 7.56158 7.63463 7.90333 8.24068 8.35358 8.91258 8.96769 9.53489 11.02987 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.029729 B = 0.003554 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.600161 B = 7876.073779 C = 8660.494862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.083 4.083 3 H 0.101 0.899 4 C 0.131 3.869 5 N -0.643 5.643 6 C 0.718 3.282 7 O -0.591 6.591 8 N -0.735 5.735 9 C 0.139 3.861 10 C 0.013 3.987 11 C -0.521 4.521 12 H 0.060 0.940 13 C 0.059 3.941 14 N -0.894 5.894 15 Si 0.897 3.103 16 H -0.280 1.280 17 H -0.286 1.286 18 H -0.272 1.272 19 C 0.114 3.886 20 C -0.094 4.094 21 H 0.129 0.871 22 C 0.495 3.505 23 O -0.509 6.509 24 O -0.511 6.511 25 H 0.053 0.947 26 H 0.080 0.920 27 H 0.064 0.936 28 H 0.071 0.929 29 H 0.072 0.928 30 H 0.393 0.607 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.022 0.978 34 H 0.022 0.978 35 H 0.262 0.738 36 H 0.074 0.926 37 H 0.088 0.912 38 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.394 18.393 6.711 20.929 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.102 4.102 3 H 0.119 0.881 4 C 0.007 3.993 5 N -0.383 5.383 6 C 0.420 3.580 7 O -0.470 6.470 8 N -0.389 5.389 9 C 0.017 3.983 10 C -0.024 4.024 11 C -0.559 4.559 12 H 0.078 0.922 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.725 3.275 16 H -0.206 1.206 17 H -0.212 1.212 18 H -0.197 1.197 19 C -0.010 4.010 20 C -0.114 4.114 21 H 0.147 0.853 22 C 0.337 3.663 23 O -0.397 6.397 24 O -0.322 6.322 25 H 0.072 0.928 26 H 0.098 0.902 27 H 0.083 0.917 28 H 0.089 0.911 29 H 0.090 0.910 30 H 0.227 0.773 31 H 0.073 0.927 32 H 0.073 0.927 33 H 0.040 0.960 34 H 0.040 0.960 35 H 0.071 0.929 36 H 0.093 0.907 37 H 0.106 0.894 38 H 0.271 0.729 Dipole moment (debyes) X Y Z Total from point charges -7.058 18.490 5.586 20.564 hybrid contribution -0.068 -0.808 0.625 1.024 sum -7.126 17.682 6.212 20.050 Atomic orbital electron populations 1.22096 0.93433 1.02627 1.03350 1.22160 0.97238 0.99394 0.91434 0.88102 1.21862 1.00654 0.80916 0.95839 1.47542 1.68756 1.11710 1.10316 1.15541 0.78267 0.79984 0.84205 1.90906 1.59185 1.82010 1.14874 1.45577 1.68058 1.10552 1.14729 1.21625 0.96901 0.85739 0.94063 1.19326 0.97694 0.90089 0.95336 1.21052 1.42320 0.95651 0.96917 0.92201 1.24988 0.95525 0.98713 0.95038 1.69954 1.48152 1.23451 1.11780 0.86511 0.79312 0.81154 0.80572 1.20568 1.21192 1.19710 1.22163 1.01882 0.94668 0.82264 1.22333 1.00056 0.98535 0.90485 0.85312 1.22943 0.79702 0.80493 0.83163 1.90696 1.43812 1.29128 1.76035 1.84576 1.66034 1.46054 1.35581 0.92775 0.90155 0.91735 0.91108 0.90954 0.77327 0.92695 0.92688 0.95958 0.95953 0.92869 0.90749 0.89377 0.72892 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.34 8.10 37.16 0.30 -1.04 16 2 C -0.08 -0.69 3.25 -88.79 -0.29 -0.97 16 3 H 0.10 0.70 8.14 -51.93 -0.42 0.27 16 4 C 0.13 1.42 6.44 -3.07 -0.02 1.40 16 5 N -0.64 -8.52 3.33 -176.10 -0.59 -9.11 16 6 C 0.72 12.90 8.49 -86.92 -0.74 12.16 16 7 O -0.59 -12.94 16.67 5.28 0.09 -12.85 16 8 N -0.74 -13.25 5.52 -65.23 -0.36 -13.61 16 9 C 0.14 3.01 5.61 -4.04 -0.02 2.99 16 10 C 0.01 0.32 5.09 -27.88 -0.14 0.18 16 11 C -0.52 -14.43 9.11 -34.44 -0.31 -14.74 16 12 H 0.06 1.63 7.74 -52.48 -0.41 1.22 16 13 C 0.06 1.65 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -26.02 13.29 55.43 0.74 -25.28 16 15 Si 0.90 21.34 29.54 -169.99 -5.02 16.31 16 16 H -0.28 -6.57 7.11 56.52 0.40 -6.16 16 17 H -0.29 -6.73 7.11 56.52 0.40 -6.32 16 18 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 19 C 0.11 1.14 5.37 -2.41 -0.01 1.13 16 20 C -0.09 -0.77 3.44 -89.51 -0.31 -1.07 16 21 H 0.13 0.88 8.14 -51.93 -0.42 0.46 16 22 C 0.50 4.16 6.93 36.00 0.25 4.41 16 23 O -0.51 -5.40 14.93 -18.75 -0.28 -5.68 16 24 O -0.51 -3.42 12.98 -39.25 -0.51 -3.93 16 25 H 0.05 0.49 7.21 -51.93 -0.37 0.12 16 26 H 0.08 0.74 6.04 -51.93 -0.31 0.43 16 27 H 0.06 0.50 8.03 -51.93 -0.42 0.08 16 28 H 0.07 0.77 8.14 -51.92 -0.42 0.35 16 29 H 0.07 0.82 7.77 -51.93 -0.40 0.42 16 30 H 0.39 6.18 6.94 -40.82 -0.28 5.89 16 31 H 0.05 1.24 8.14 -51.93 -0.42 0.81 16 32 H 0.05 1.23 8.14 -51.93 -0.42 0.81 16 33 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 34 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.26 7.19 8.31 -40.82 -0.34 6.85 16 36 H 0.07 0.72 7.49 -51.93 -0.39 0.33 16 37 H 0.09 0.84 7.28 -51.93 -0.38 0.47 16 38 H 0.41 1.11 9.10 45.56 0.41 1.52 16 LS Contribution 317.78 15.07 4.79 4.79 Total: -1.00 -34.33 317.78 -7.18 -41.51 By element: Atomic # 1 Polarization: 6.50 SS G_CDS: -4.64 Total: 1.86 kcal Atomic # 6 Polarization: 7.38 SS G_CDS: -1.39 Total: 5.98 kcal Atomic # 7 Polarization: -47.79 SS G_CDS: -0.21 Total: -48.00 kcal Atomic # 8 Polarization: -21.76 SS G_CDS: -0.70 Total: -22.46 kcal Atomic # 14 Polarization: 21.34 SS G_CDS: -5.02 Total: 16.31 kcal Total LS contribution 4.79 Total: 4.79 kcal Total: -34.33 -7.18 -41.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833619939.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.145 kcal (2) G-P(sol) polarization free energy of solvation -34.335 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.480 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.179 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.659 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds