Wall clock time and date at job start Mon Mar 30 2020 02:16:56 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08992 * 110.64202 * 2 1 4 4 C 1.54318 * 110.71741 * 236.85388 * 2 1 3 5 5 N 1.47025 * 107.27582 * 263.83333 * 4 2 1 6 6 C 1.34774 * 125.65208 * 181.02572 * 5 4 2 7 7 O 1.21595 * 119.99870 * 0.02562 * 6 5 4 8 8 N 1.34774 * 120.00189 * 179.72572 * 6 5 4 9 9 C 1.46497 * 120.00057 * 180.27880 * 8 6 5 10 10 C 1.53000 * 109.46915 * 179.97438 * 9 8 6 11 11 C 1.50700 * 109.47098 * 179.97438 * 10 9 8 12 12 H 1.08005 * 120.00191 * 0.02562 * 11 10 9 13 13 C 1.37877 * 120.00325 * 179.97438 * 11 10 9 14 14 N 1.31509 * 119.99750 * 0.02562 * 13 11 10 15 15 Si 1.86795 * 120.00261 * 180.02562 * 13 11 10 16 16 H 1.48506 * 109.47146 * 89.99941 * 15 13 11 17 17 H 1.48504 * 109.47366 * 210.00256 * 15 13 11 18 18 H 1.48500 * 109.47328 * 330.00148 * 15 13 11 19 19 C 1.47428 * 108.69678 * 1.28631 * 5 4 2 20 20 C 1.55127 * 104.72741 * 335.55607 * 19 5 4 21 21 H 1.09001 * 111.18964 * 279.19385 * 20 19 5 22 22 C 1.50688 * 110.94067 * 155.28779 * 20 19 5 23 23 O 1.20825 * 120.00218 * 218.02549 * 22 20 19 24 24 O 1.34229 * 120.00279 * 38.03189 * 22 20 19 25 25 H 1.08997 * 109.47626 * 190.73914 * 1 2 3 26 26 H 1.09005 * 109.46904 * 310.73888 * 1 2 3 27 27 H 1.09001 * 109.47176 * 70.73313 * 1 2 3 28 28 H 1.09008 * 109.88002 * 144.41580 * 4 2 1 29 29 H 1.09001 * 110.01478 * 23.32190 * 4 2 1 30 30 H 0.96998 * 119.99611 * 0.26816 * 8 6 5 31 31 H 1.09002 * 109.46649 * 299.99180 * 9 8 6 32 32 H 1.08993 * 109.47864 * 59.99458 * 9 8 6 33 33 H 1.09002 * 109.46911 * 299.99164 * 10 9 8 34 34 H 1.09002 * 109.47576 * 59.99648 * 10 9 8 35 35 H 0.97002 * 120.00069 * 180.02562 * 14 13 11 36 36 H 1.08997 * 110.36213 * 94.48785 * 19 5 4 37 37 H 1.08997 * 110.36515 * 216.80495 * 19 5 4 38 38 H 0.96696 * 117.00435 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9143 1.0199 0.0000 4 6 2.0759 -0.7892 -1.2085 5 7 2.3715 -2.1520 -0.7426 6 6 2.8848 -3.1454 -1.4950 7 8 3.1440 -2.9489 -2.6666 8 7 3.1165 -4.3548 -0.9472 9 6 3.6801 -5.4328 -1.7635 10 6 3.8428 -6.6898 -0.9065 11 6 4.4221 -7.7989 -1.7463 12 1 4.6517 -7.6246 -2.7872 13 6 4.6600 -9.0359 -1.1857 14 7 4.3809 -9.2480 0.0818 15 14 5.3787 -10.4105 -2.2266 16 1 6.8611 -10.3664 -2.1496 17 1 4.8954 -11.7199 -1.7195 18 1 4.9510 -10.2379 -3.6381 19 6 2.0073 -2.2536 0.6824 20 6 2.0789 -0.7975 1.2125 21 1 3.1060 -0.5098 1.4366 22 6 1.1954 -0.6201 2.4203 23 8 0.5754 0.4061 2.5698 24 8 1.0974 -1.6020 3.3303 25 1 -0.3634 -1.0096 0.1915 26 1 -0.3633 0.6707 0.7787 27 1 -0.3633 0.3391 -0.9701 28 1 2.9869 -0.3181 -1.5780 29 1 1.3282 -0.8224 -2.0010 30 1 2.9101 -4.5114 -0.0125 31 1 3.0108 -5.6452 -2.5972 32 1 4.6532 -5.1270 -2.1477 33 1 4.5124 -6.4771 -0.0731 34 1 2.8699 -6.9959 -0.5219 35 1 4.5486 -10.1182 0.4763 36 1 0.9973 -2.6493 0.7884 37 1 2.7206 -2.8852 1.2120 38 1 0.5182 -1.4423 4.0879 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833619939.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:56 Heat of formation + Delta-G solvation = -151.440541 kcal Electronic energy + Delta-G solvation = -20745.076173 eV Core-core repulsion = 17393.235054 eV Total energy + Delta-G solvation = -3351.841118 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.96409 -40.89370 -38.83738 -37.10758 -36.56660 -34.86776 -33.76879 -31.38770 -31.14529 -27.83831 -26.57329 -25.49546 -23.40552 -22.81801 -21.18031 -20.64357 -19.23232 -18.88324 -18.47888 -17.88021 -17.31924 -16.86625 -16.54344 -16.42955 -15.93726 -15.27509 -14.95735 -14.76581 -14.50143 -14.26970 -14.03421 -13.75996 -13.61115 -13.26068 -13.14159 -12.92117 -12.55613 -12.50800 -12.25433 -12.21404 -11.95572 -11.82228 -11.67931 -11.49800 -11.36154 -11.19381 -10.58796 -10.20482 -9.53875 -8.22292 -6.32363 1.15620 1.43356 1.44033 1.53174 1.57607 2.05974 2.13674 2.42579 2.97692 3.12731 3.17387 3.41276 3.82612 4.04383 4.13223 4.42331 4.44009 4.46559 4.52806 4.54111 4.68533 4.78543 4.82202 4.87584 4.97549 5.08488 5.24251 5.29190 5.32220 5.52314 5.60811 5.67431 5.80716 5.98527 6.18837 6.80556 6.94674 7.01346 7.36869 7.52361 8.89639 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.029729 B = 0.003554 C = 0.003232 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 941.600161 B = 7876.073779 C = 8660.494862 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.072 4.072 3 H 0.122 0.878 4 C 0.126 3.874 5 N -0.636 5.636 6 C 0.716 3.284 7 O -0.635 6.635 8 N -0.731 5.731 9 C 0.160 3.840 10 C 0.025 3.975 11 C -0.547 4.547 12 H 0.059 0.941 13 C 0.009 3.991 14 N -0.926 5.926 15 Si 0.964 3.036 16 H -0.272 1.272 17 H -0.280 1.280 18 H -0.267 1.267 19 C 0.109 3.891 20 C -0.088 4.088 21 H 0.147 0.853 22 C 0.503 3.497 23 O -0.532 6.532 24 O -0.510 6.510 25 H 0.045 0.955 26 H 0.075 0.925 27 H 0.070 0.930 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.405 0.595 31 H 0.043 0.957 32 H 0.045 0.955 33 H 0.010 0.990 34 H 0.008 0.992 35 H 0.266 0.734 36 H 0.080 0.920 37 H 0.094 0.906 38 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.383 18.927 7.252 21.572 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.091 4.091 3 H 0.140 0.860 4 C 0.004 3.996 5 N -0.375 5.375 6 C 0.418 3.582 7 O -0.517 6.517 8 N -0.386 5.386 9 C 0.036 3.964 10 C -0.013 4.013 11 C -0.585 4.585 12 H 0.077 0.923 13 C -0.190 4.190 14 N -0.565 5.565 15 Si 0.789 3.211 16 H -0.198 1.198 17 H -0.205 1.205 18 H -0.191 1.191 19 C -0.014 4.014 20 C -0.108 4.108 21 H 0.165 0.835 22 C 0.346 3.654 23 O -0.421 6.421 24 O -0.324 6.324 25 H 0.064 0.936 26 H 0.094 0.906 27 H 0.089 0.911 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.241 0.759 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.028 0.972 34 H 0.027 0.973 35 H 0.075 0.925 36 H 0.098 0.902 37 H 0.113 0.887 38 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -7.079 19.056 6.193 21.250 hybrid contribution -0.122 -0.937 0.529 1.083 sum -7.201 18.119 6.722 20.624 Atomic orbital electron populations 1.22053 0.93538 1.02021 1.03528 1.22124 0.96989 0.99929 0.90084 0.86028 1.22060 1.00741 0.79810 0.97036 1.47487 1.67023 1.11493 1.11473 1.15605 0.78290 0.80392 0.83931 1.90870 1.61075 1.82815 1.16927 1.45258 1.68160 1.10169 1.14975 1.21109 0.96369 0.85541 0.93401 1.19123 0.96283 0.90936 0.94952 1.21462 1.42784 0.96918 0.97333 0.92291 1.25842 0.95750 1.01188 0.96244 1.70053 1.48930 1.24277 1.13276 0.85456 0.78707 0.77968 0.78982 1.19763 1.20540 1.19118 1.22360 1.02308 0.96414 0.80272 1.22323 1.01183 0.96835 0.90424 0.83501 1.22818 0.79081 0.80265 0.83236 1.90701 1.44702 1.30078 1.76661 1.84537 1.66409 1.45356 1.36119 0.93560 0.90590 0.91129 0.90953 0.91554 0.75918 0.93817 0.93634 0.97186 0.97320 0.92549 0.90189 0.88741 0.70800 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.35 8.10 71.98 0.58 -1.77 16 2 C -0.07 -1.03 3.25 -9.61 -0.03 -1.06 16 3 H 0.12 1.32 8.14 -2.39 -0.02 1.30 16 4 C 0.13 2.57 6.44 86.73 0.56 3.13 16 5 N -0.64 -16.18 3.33 -829.30 -2.76 -18.94 16 6 C 0.72 25.55 8.49 179.06 1.52 27.07 16 7 O -0.64 -28.04 16.67 -4.01 -0.07 -28.11 16 8 N -0.73 -26.27 5.52 -478.55 -2.64 -28.91 16 9 C 0.16 7.00 5.61 86.38 0.48 7.49 16 10 C 0.02 1.24 5.09 29.85 0.15 1.39 16 11 C -0.55 -30.50 9.11 25.60 0.23 -30.27 16 12 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 13 C 0.01 0.48 5.46 84.66 0.46 0.94 16 14 N -0.93 -53.89 13.29 21.45 0.28 -53.61 16 15 Si 0.96 43.45 29.54 68.60 2.03 45.47 16 16 H -0.27 -11.88 7.11 99.48 0.71 -11.17 16 17 H -0.28 -12.26 7.11 99.48 0.71 -11.55 16 18 H -0.27 -11.69 7.11 99.48 0.71 -10.98 16 19 C 0.11 1.98 5.37 86.93 0.47 2.45 16 20 C -0.09 -1.22 3.44 -10.07 -0.03 -1.25 16 21 H 0.15 1.55 8.14 -2.39 -0.02 1.53 16 22 C 0.50 7.31 6.93 71.23 0.49 7.80 16 23 O -0.53 -10.20 14.93 21.97 0.33 -9.87 16 24 O -0.51 -5.64 12.98 -51.40 -0.67 -6.31 16 25 H 0.05 0.77 7.21 -2.39 -0.02 0.75 16 26 H 0.08 1.28 6.04 -2.38 -0.01 1.26 16 27 H 0.07 0.98 8.03 -2.39 -0.02 0.96 16 28 H 0.07 1.48 8.14 -2.38 -0.02 1.46 16 29 H 0.07 1.45 7.77 -2.39 -0.02 1.43 16 30 H 0.40 12.52 6.94 -92.71 -0.64 11.87 16 31 H 0.04 2.00 8.14 -2.39 -0.02 1.98 16 32 H 0.05 2.07 8.14 -2.39 -0.02 2.05 16 33 H 0.01 0.51 8.14 -2.39 -0.02 0.50 16 34 H 0.01 0.45 8.14 -2.39 -0.02 0.43 16 35 H 0.27 14.52 8.31 -92.71 -0.77 13.75 16 36 H 0.08 1.41 7.49 -2.39 -0.02 1.39 16 37 H 0.09 1.63 7.28 -2.39 -0.02 1.61 16 38 H 0.43 1.32 9.10 -74.06 -0.67 0.65 16 Total: -1.00 -73.10 317.78 1.17 -71.94 By element: Atomic # 1 Polarization: 12.65 SS G_CDS: -0.23 Total: 12.42 kcal Atomic # 6 Polarization: 11.03 SS G_CDS: 4.89 Total: 15.91 kcal Atomic # 7 Polarization: -96.35 SS G_CDS: -5.11 Total: -101.46 kcal Atomic # 8 Polarization: -43.88 SS G_CDS: -0.41 Total: -44.28 kcal Atomic # 14 Polarization: 43.45 SS G_CDS: 2.03 Total: 45.47 kcal Total: -73.10 1.17 -71.94 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833619939.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.505 kcal (2) G-P(sol) polarization free energy of solvation -73.102 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.608 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.167 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -151.441 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds