Wall clock time and date at job start Mon Mar 30 2020 02:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.28776 * 2 1 4 4 C 1.54005 * 110.32643 * 122.13818 * 2 1 3 5 5 N 1.47485 * 107.08612 * 120.30316 * 4 2 1 6 6 C 1.34769 * 127.03606 * 154.51938 * 5 4 2 7 7 O 1.21590 * 119.99925 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00494 * 179.97438 * 6 5 4 9 9 C 1.46494 * 120.00506 * 179.72041 * 8 6 5 10 10 C 1.53000 * 109.47500 * 180.27418 * 9 8 6 11 11 C 1.50702 * 109.47512 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99504 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00236 * 179.97438 * 11 10 9 14 14 N 1.31523 * 119.99883 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00076 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47133 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47163 * 120.00530 * 15 13 11 18 18 H 1.48507 * 109.47227 * 240.00065 * 15 13 11 19 19 C 1.48115 * 105.92748 * 334.77613 * 5 4 2 20 20 C 1.54590 * 103.42772 * 39.02706 * 19 5 4 21 21 H 1.09002 * 110.57328 * 81.16586 * 20 19 5 22 22 C 1.50701 * 110.83650 * 204.44122 * 20 19 5 23 23 O 1.20823 * 119.99933 * 17.89990 * 22 20 19 24 24 O 1.34224 * 120.00206 * 197.89000 * 22 20 19 25 25 H 1.08993 * 109.47447 * 293.90901 * 1 2 3 26 26 H 1.09000 * 109.47228 * 53.91254 * 1 2 3 27 27 H 1.09007 * 109.47160 * 173.91194 * 1 2 3 28 28 H 1.09000 * 109.91238 * 0.93849 * 4 2 1 29 29 H 1.09005 * 109.91022 * 239.65996 * 4 2 1 30 30 H 0.97006 * 119.99321 * 359.97438 * 8 6 5 31 31 H 1.09003 * 109.47482 * 300.27556 * 9 8 6 32 32 H 1.09005 * 109.46807 * 60.27614 * 9 8 6 33 33 H 1.09003 * 109.46866 * 300.00515 * 10 9 8 34 34 H 1.08997 * 109.47169 * 60.00008 * 10 9 8 35 35 H 0.96997 * 119.99525 * 179.97438 * 14 13 11 36 36 H 1.09001 * 110.65794 * 157.51392 * 19 5 4 37 37 H 1.09003 * 110.66536 * 280.61850 * 19 5 4 38 38 H 0.96698 * 117.00048 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0223 0.0000 4 6 2.0649 -0.7682 1.2229 5 7 2.8825 -1.8836 0.7102 6 6 3.8946 -2.5069 1.3453 7 8 4.2170 -2.1578 2.4645 8 7 4.5496 -3.5174 0.7399 9 6 5.6537 -4.1909 1.4278 10 6 6.2243 -5.2868 0.5253 11 6 7.3597 -5.9801 1.2331 12 1 7.6461 -5.6698 2.2272 13 6 8.0330 -7.0104 0.6118 14 7 7.6845 -7.3879 -0.5989 15 14 9.4409 -7.8693 1.4890 16 1 9.6342 -7.2600 2.8293 17 1 9.1226 -9.3117 1.6415 18 1 10.6855 -7.7185 0.6931 19 6 2.3677 -2.1742 -0.6478 20 6 2.0693 -0.7720 -1.2263 21 1 2.9825 -0.3104 -1.6020 22 6 1.0245 -0.8503 -2.3095 23 8 0.3175 -1.8261 -2.3975 24 8 0.8790 0.1642 -3.1763 25 1 -0.3634 0.4165 0.9394 26 1 -0.3634 0.6053 -0.8305 27 1 -0.3634 -1.0219 -0.1090 28 1 1.2330 -1.1570 1.8101 29 1 2.6794 -0.1088 1.8359 30 1 4.2921 -3.7962 -0.1528 31 1 6.4349 -3.4662 1.6575 32 1 5.2877 -4.6362 2.3530 33 1 5.4431 -6.0115 0.2956 34 1 6.5902 -4.8416 -0.3999 35 1 8.1584 -8.1126 -1.0362 36 1 3.1244 -2.6828 -1.2452 37 1 1.4553 -2.7682 -0.5944 38 1 0.1954 0.0685 -3.8534 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833619941.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:59 Heat of formation + Delta-G solvation = -127.616310 kcal Electronic energy + Delta-G solvation = -20695.202214 eV Core-core repulsion = 17344.394191 eV Total energy + Delta-G solvation = -3350.808022 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.18978 -39.72127 -37.79425 -36.38915 -34.82361 -33.24762 -32.59827 -30.36043 -29.55862 -26.68065 -25.28842 -24.32736 -22.37496 -21.01557 -20.14902 -19.75619 -18.35369 -18.02561 -17.12041 -16.44103 -16.03175 -15.55156 -15.40632 -15.06395 -14.48219 -14.16079 -13.92285 -13.51880 -13.22138 -13.09801 -12.99515 -12.59524 -12.55778 -12.25117 -11.87682 -11.52341 -11.35934 -11.14366 -11.13758 -11.04081 -10.74426 -10.60660 -10.32704 -9.97778 -9.56459 -9.24351 -8.84132 -8.46908 -8.23061 -6.08318 -4.10909 1.83276 2.46644 2.91349 3.29505 3.37127 3.42549 3.49769 4.00996 4.06437 4.33127 4.43647 4.48869 4.75149 4.93258 4.95785 5.08343 5.28038 5.28942 5.33260 5.42645 5.59455 5.67197 5.69115 5.89956 6.06604 6.14333 6.36299 6.39778 6.77001 6.97639 7.23082 7.53660 7.56790 7.63735 7.90820 8.24136 8.35072 8.91094 8.96951 9.53922 11.03418 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.030674 B = 0.003475 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.594935 B = 8054.561808 C = 8760.775799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.089 4.089 3 H 0.098 0.902 4 C 0.130 3.870 5 N -0.644 5.644 6 C 0.722 3.278 7 O -0.591 6.591 8 N -0.736 5.736 9 C 0.140 3.860 10 C 0.012 3.988 11 C -0.520 4.520 12 H 0.060 0.940 13 C 0.058 3.942 14 N -0.894 5.894 15 Si 0.897 3.103 16 H -0.271 1.271 17 H -0.283 1.283 18 H -0.283 1.283 19 C 0.116 3.884 20 C -0.098 4.098 21 H 0.119 0.881 22 C 0.497 3.503 23 O -0.509 6.509 24 O -0.515 6.515 25 H 0.070 0.930 26 H 0.059 0.941 27 H 0.066 0.934 28 H 0.069 0.931 29 H 0.082 0.918 30 H 0.393 0.607 31 H 0.055 0.945 32 H 0.055 0.945 33 H 0.022 0.978 34 H 0.022 0.978 35 H 0.261 0.739 36 H 0.087 0.913 37 H 0.090 0.910 38 H 0.411 0.589 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.698 16.406 -4.912 23.232 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.109 4.109 3 H 0.116 0.884 4 C 0.006 3.994 5 N -0.383 5.383 6 C 0.425 3.575 7 O -0.469 6.469 8 N -0.389 5.389 9 C 0.017 3.983 10 C -0.025 4.025 11 C -0.558 4.558 12 H 0.079 0.921 13 C -0.143 4.143 14 N -0.533 5.533 15 Si 0.725 3.275 16 H -0.196 1.196 17 H -0.210 1.210 18 H -0.210 1.210 19 C -0.008 4.008 20 C -0.119 4.119 21 H 0.137 0.863 22 C 0.339 3.661 23 O -0.396 6.396 24 O -0.327 6.327 25 H 0.089 0.911 26 H 0.078 0.922 27 H 0.085 0.915 28 H 0.087 0.913 29 H 0.101 0.899 30 H 0.227 0.773 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.041 0.959 34 H 0.040 0.960 35 H 0.071 0.929 36 H 0.105 0.895 37 H 0.108 0.892 38 H 0.270 0.730 Dipole moment (debyes) X Y Z Total from point charges -15.169 16.214 -3.839 22.533 hybrid contribution 0.172 -0.726 -0.706 1.027 sum -14.997 15.488 -4.545 22.033 Atomic orbital electron populations 1.22055 0.93634 1.03030 1.02822 1.22078 0.96673 0.99929 0.92184 0.88398 1.21911 0.94476 0.87896 0.95116 1.47796 1.35567 1.37899 1.17084 1.15471 0.78260 0.79988 0.83831 1.90904 1.68913 1.68548 1.18563 1.45582 1.37164 1.35685 1.20492 1.21633 0.85655 0.94753 0.96258 1.19336 0.96151 0.92141 0.94894 1.21085 1.15719 1.16891 1.02144 0.92129 1.24999 0.97506 0.96898 0.94929 1.69972 1.41302 1.28869 1.13191 0.86452 0.81902 0.79335 0.79847 1.19555 1.20950 1.20960 1.22270 1.00898 0.93981 0.83688 1.22116 0.97537 0.99905 0.92312 0.86320 1.22905 0.82967 0.79578 0.80689 1.90749 1.44613 1.32648 1.71606 1.84543 1.58821 1.46164 1.43153 0.91111 0.92197 0.91465 0.91294 0.89915 0.77345 0.92661 0.92645 0.95927 0.95973 0.92922 0.89482 0.89163 0.73031 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.11 7.89 37.16 0.29 -0.82 16 2 C -0.09 -0.69 3.52 -89.24 -0.31 -1.01 16 3 H 0.10 0.62 8.14 -51.93 -0.42 0.20 16 4 C 0.13 1.39 6.62 -2.98 -0.02 1.37 16 5 N -0.64 -8.76 3.29 -175.70 -0.58 -9.34 16 6 C 0.72 13.14 8.54 -86.93 -0.74 12.40 16 7 O -0.59 -12.96 16.68 5.29 0.09 -12.87 16 8 N -0.74 -13.49 5.53 -65.23 -0.36 -13.85 16 9 C 0.14 3.04 5.61 -4.04 -0.02 3.02 16 10 C 0.01 0.31 5.09 -27.88 -0.14 0.17 16 11 C -0.52 -14.50 9.11 -34.44 -0.31 -14.81 16 12 H 0.06 1.66 7.74 -52.49 -0.41 1.25 16 13 C 0.06 1.64 5.46 -17.82 -0.10 1.55 16 14 N -0.89 -26.23 13.29 55.43 0.74 -25.49 16 15 Si 0.90 21.46 29.54 -169.99 -5.02 16.44 16 16 H -0.27 -6.38 7.11 56.52 0.40 -5.98 16 17 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 18 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 19 C 0.12 1.26 6.17 -2.32 -0.01 1.24 16 20 C -0.10 -0.85 3.49 -90.08 -0.31 -1.16 16 21 H 0.12 0.92 8.14 -51.93 -0.42 0.49 16 22 C 0.50 4.34 5.53 36.01 0.20 4.54 16 23 O -0.51 -5.87 15.95 -18.75 -0.30 -6.17 16 24 O -0.51 -3.27 13.41 -39.24 -0.53 -3.80 16 25 H 0.07 0.42 8.14 -51.93 -0.42 0.00 16 26 H 0.06 0.39 7.50 -51.93 -0.39 0.00 16 27 H 0.07 0.57 7.45 -51.93 -0.39 0.19 16 28 H 0.07 0.71 7.68 -51.93 -0.40 0.31 16 29 H 0.08 0.94 8.05 -51.93 -0.42 0.52 16 30 H 0.39 6.35 6.81 -40.82 -0.28 6.07 16 31 H 0.05 1.24 8.14 -51.93 -0.42 0.82 16 32 H 0.06 1.26 8.14 -51.93 -0.42 0.83 16 33 H 0.02 0.59 8.14 -51.93 -0.42 0.17 16 34 H 0.02 0.57 8.14 -51.93 -0.42 0.15 16 35 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 36 H 0.09 0.91 6.83 -51.93 -0.35 0.56 16 37 H 0.09 1.02 7.23 -51.93 -0.38 0.65 16 38 H 0.41 0.97 9.10 45.56 0.41 1.38 16 LS Contribution 319.75 15.07 4.82 4.82 Total: -1.00 -34.58 319.75 -7.32 -41.90 By element: Atomic # 1 Polarization: 6.56 SS G_CDS: -4.69 Total: 1.87 kcal Atomic # 6 Polarization: 7.98 SS G_CDS: -1.49 Total: 6.49 kcal Atomic # 7 Polarization: -48.48 SS G_CDS: -0.20 Total: -48.68 kcal Atomic # 8 Polarization: -22.10 SS G_CDS: -0.74 Total: -22.83 kcal Atomic # 14 Polarization: 21.46 SS G_CDS: -5.02 Total: 16.44 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -34.58 -7.32 -41.90 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833619941.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.717 kcal (2) G-P(sol) polarization free energy of solvation -34.581 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -120.298 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.318 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.899 kcal (6) G-S(sol) free energy of system = (1) + (5) -127.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds