Wall clock time and date at job start Mon Mar 30 2020 02:16:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.08996 * 110.28776 * 2 1 4 4 C 1.54005 * 110.32643 * 122.13818 * 2 1 3 5 5 N 1.47485 * 107.08612 * 120.30316 * 4 2 1 6 6 C 1.34769 * 127.03606 * 154.51938 * 5 4 2 7 7 O 1.21590 * 119.99925 * 359.97438 * 6 5 4 8 8 N 1.34773 * 120.00494 * 179.97438 * 6 5 4 9 9 C 1.46494 * 120.00506 * 179.72041 * 8 6 5 10 10 C 1.53000 * 109.47500 * 180.27418 * 9 8 6 11 11 C 1.50702 * 109.47512 * 180.02562 * 10 9 8 12 12 H 1.07996 * 119.99504 * 359.97438 * 11 10 9 13 13 C 1.37871 * 120.00236 * 179.97438 * 11 10 9 14 14 N 1.31523 * 119.99883 * 0.02562 * 13 11 10 15 15 Si 1.86796 * 120.00076 * 179.97438 * 13 11 10 16 16 H 1.48498 * 109.47133 * 359.97438 * 15 13 11 17 17 H 1.48499 * 109.47163 * 120.00530 * 15 13 11 18 18 H 1.48507 * 109.47227 * 240.00065 * 15 13 11 19 19 C 1.48115 * 105.92748 * 334.77613 * 5 4 2 20 20 C 1.54590 * 103.42772 * 39.02706 * 19 5 4 21 21 H 1.09002 * 110.57328 * 81.16586 * 20 19 5 22 22 C 1.50701 * 110.83650 * 204.44122 * 20 19 5 23 23 O 1.20823 * 119.99933 * 17.89990 * 22 20 19 24 24 O 1.34224 * 120.00206 * 197.89000 * 22 20 19 25 25 H 1.08993 * 109.47447 * 293.90901 * 1 2 3 26 26 H 1.09000 * 109.47228 * 53.91254 * 1 2 3 27 27 H 1.09007 * 109.47160 * 173.91194 * 1 2 3 28 28 H 1.09000 * 109.91238 * 0.93849 * 4 2 1 29 29 H 1.09005 * 109.91022 * 239.65996 * 4 2 1 30 30 H 0.97006 * 119.99321 * 359.97438 * 8 6 5 31 31 H 1.09003 * 109.47482 * 300.27556 * 9 8 6 32 32 H 1.09005 * 109.46807 * 60.27614 * 9 8 6 33 33 H 1.09003 * 109.46866 * 300.00515 * 10 9 8 34 34 H 1.08997 * 109.47169 * 60.00008 * 10 9 8 35 35 H 0.96997 * 119.99525 * 179.97438 * 14 13 11 36 36 H 1.09001 * 110.65794 * 157.51392 * 19 5 4 37 37 H 1.09003 * 110.66536 * 280.61850 * 19 5 4 38 38 H 0.96698 * 117.00048 * 180.02562 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9079 1.0223 0.0000 4 6 2.0649 -0.7682 1.2229 5 7 2.8825 -1.8836 0.7102 6 6 3.8946 -2.5069 1.3453 7 8 4.2170 -2.1578 2.4645 8 7 4.5496 -3.5174 0.7399 9 6 5.6537 -4.1909 1.4278 10 6 6.2243 -5.2868 0.5253 11 6 7.3597 -5.9801 1.2331 12 1 7.6461 -5.6698 2.2272 13 6 8.0330 -7.0104 0.6118 14 7 7.6845 -7.3879 -0.5989 15 14 9.4409 -7.8693 1.4890 16 1 9.6342 -7.2600 2.8293 17 1 9.1226 -9.3117 1.6415 18 1 10.6855 -7.7185 0.6931 19 6 2.3677 -2.1742 -0.6478 20 6 2.0693 -0.7720 -1.2263 21 1 2.9825 -0.3104 -1.6020 22 6 1.0245 -0.8503 -2.3095 23 8 0.3175 -1.8261 -2.3975 24 8 0.8790 0.1642 -3.1763 25 1 -0.3634 0.4165 0.9394 26 1 -0.3634 0.6053 -0.8305 27 1 -0.3634 -1.0219 -0.1090 28 1 1.2330 -1.1570 1.8101 29 1 2.6794 -0.1088 1.8359 30 1 4.2921 -3.7962 -0.1528 31 1 6.4349 -3.4662 1.6575 32 1 5.2877 -4.6362 2.3530 33 1 5.4431 -6.0115 0.2956 34 1 6.5902 -4.8416 -0.3999 35 1 8.1584 -8.1126 -1.0362 36 1 3.1244 -2.6828 -1.2452 37 1 1.4553 -2.7682 -0.5944 38 1 0.1954 0.0685 -3.8534 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833619941.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:59 Heat of formation + Delta-G solvation = -152.619078 kcal Electronic energy + Delta-G solvation = -20696.286415 eV Core-core repulsion = 17344.394191 eV Total energy + Delta-G solvation = -3351.892224 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.00451 -40.88670 -38.83648 -37.05144 -36.58197 -34.89874 -33.96460 -31.40716 -31.14122 -27.77554 -26.48691 -25.79848 -23.31374 -22.78695 -21.16273 -20.79345 -19.26956 -19.00553 -18.48859 -17.87318 -17.13433 -16.74209 -16.60030 -16.47075 -15.91534 -15.40063 -15.17393 -14.84457 -14.45720 -14.29373 -13.79676 -13.75229 -13.64463 -13.36562 -13.17818 -12.94633 -12.52413 -12.50165 -12.28322 -12.23861 -12.00178 -11.83929 -11.69706 -11.51469 -11.43289 -11.22873 -10.60934 -10.25538 -9.61316 -8.23714 -6.34042 1.15633 1.41343 1.41996 1.46006 1.56780 1.99371 2.14756 2.41705 3.03242 3.11285 3.24606 3.35747 3.79957 4.02457 4.17894 4.34584 4.41244 4.42622 4.50933 4.52291 4.62696 4.74198 4.81044 4.85496 4.91467 5.06197 5.15392 5.28648 5.31231 5.50182 5.58350 5.61615 5.78963 5.96929 6.17016 6.79215 6.90428 7.00314 7.35384 7.49184 8.88524 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.030674 B = 0.003475 C = 0.003195 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 912.594935 B = 8054.561808 C = 8760.775799 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.077 4.077 3 H 0.122 0.878 4 C 0.123 3.877 5 N -0.639 5.639 6 C 0.721 3.279 7 O -0.632 6.632 8 N -0.732 5.732 9 C 0.160 3.840 10 C 0.024 3.976 11 C -0.545 4.545 12 H 0.060 0.940 13 C 0.007 3.993 14 N -0.927 5.927 15 Si 0.966 3.034 16 H -0.265 1.265 17 H -0.277 1.277 18 H -0.276 1.276 19 C 0.111 3.889 20 C -0.095 4.095 21 H 0.133 0.867 22 C 0.507 3.493 23 O -0.541 6.541 24 O -0.507 6.507 25 H 0.083 0.917 26 H 0.070 0.930 27 H 0.049 0.951 28 H 0.072 0.928 29 H 0.077 0.923 30 H 0.403 0.597 31 H 0.047 0.953 32 H 0.044 0.956 33 H 0.007 0.993 34 H 0.009 0.991 35 H 0.266 0.734 36 H 0.089 0.911 37 H 0.087 0.913 38 H 0.430 0.570 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.051 17.603 -5.366 24.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.096 4.096 3 H 0.140 0.860 4 C 0.000 4.000 5 N -0.377 5.377 6 C 0.423 3.577 7 O -0.514 6.514 8 N -0.387 5.387 9 C 0.036 3.964 10 C -0.014 4.014 11 C -0.583 4.583 12 H 0.078 0.922 13 C -0.192 4.192 14 N -0.567 5.567 15 Si 0.791 3.209 16 H -0.189 1.189 17 H -0.203 1.203 18 H -0.202 1.202 19 C -0.012 4.012 20 C -0.115 4.115 21 H 0.151 0.849 22 C 0.350 3.650 23 O -0.431 6.431 24 O -0.321 6.321 25 H 0.102 0.898 26 H 0.089 0.911 27 H 0.068 0.932 28 H 0.090 0.910 29 H 0.095 0.905 30 H 0.239 0.761 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.025 0.975 34 H 0.028 0.972 35 H 0.074 0.926 36 H 0.107 0.893 37 H 0.105 0.895 38 H 0.292 0.708 Dipole moment (debyes) X Y Z Total from point charges -15.580 17.454 -4.350 23.797 hybrid contribution 0.193 -1.041 -0.632 1.233 sum -15.387 16.414 -4.982 23.043 Atomic orbital electron populations 1.22029 0.92844 1.02285 1.04000 1.22062 0.97130 1.00374 0.90005 0.85978 1.22179 0.93988 0.87140 0.96683 1.47736 1.34164 1.37713 1.18054 1.15517 0.78936 0.79842 0.83439 1.90868 1.70434 1.69694 1.20411 1.45286 1.36645 1.35921 1.20858 1.21122 0.86342 0.93696 0.95216 1.19135 0.95170 0.92429 0.94666 1.21484 1.16769 1.17605 1.02472 0.92177 1.25877 1.00115 0.97549 0.95646 1.70073 1.42584 1.29468 1.14544 0.85375 0.78552 0.78151 0.78835 1.18900 1.20285 1.20183 1.22391 1.00623 0.95857 0.82338 1.22064 0.98410 0.98248 0.92780 0.84864 1.22745 0.82241 0.79363 0.80663 1.90753 1.45825 1.33978 1.72523 1.84492 1.59503 1.44861 1.43206 0.89845 0.91116 0.93164 0.90957 0.90476 0.76086 0.93447 0.93724 0.97478 0.97238 0.92557 0.89252 0.89498 0.70802 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.80 7.89 71.98 0.57 -1.23 16 2 C -0.08 -1.00 3.52 -9.90 -0.03 -1.04 16 3 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16 4 C 0.12 2.48 6.62 86.53 0.57 3.06 16 5 N -0.64 -17.00 3.29 -828.05 -2.73 -19.73 16 6 C 0.72 26.32 8.54 179.06 1.53 27.85 16 7 O -0.63 -28.10 16.68 -4.00 -0.07 -28.17 16 8 N -0.73 -27.16 5.53 -478.55 -2.64 -29.81 16 9 C 0.16 7.13 5.61 86.38 0.48 7.61 16 10 C 0.02 1.21 5.09 29.85 0.15 1.36 16 11 C -0.54 -30.72 9.11 25.60 0.23 -30.48 16 12 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16 13 C 0.01 0.38 5.46 84.65 0.46 0.85 16 14 N -0.93 -54.64 13.29 21.45 0.28 -54.35 16 15 Si 0.97 43.86 29.54 68.60 2.03 45.89 16 16 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16 17 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16 18 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16 19 C 0.11 2.31 6.17 86.61 0.53 2.85 16 20 C -0.09 -1.43 3.49 -10.45 -0.04 -1.46 16 21 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16 22 C 0.51 7.76 5.53 71.24 0.39 8.15 16 23 O -0.54 -11.76 15.95 21.97 0.35 -11.41 16 24 O -0.51 -4.92 13.41 -51.35 -0.69 -5.61 16 25 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16 26 H 0.07 0.70 7.50 -2.39 -0.02 0.68 16 27 H 0.05 0.78 7.45 -2.38 -0.02 0.76 16 28 H 0.07 1.42 7.68 -2.39 -0.02 1.41 16 29 H 0.08 1.67 8.05 -2.38 -0.02 1.65 16 30 H 0.40 13.13 6.81 -92.70 -0.63 12.50 16 31 H 0.05 2.17 8.14 -2.39 -0.02 2.16 16 32 H 0.04 2.07 8.14 -2.38 -0.02 2.05 16 33 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16 34 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16 35 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16 36 H 0.09 1.81 6.83 -2.39 -0.02 1.79 16 37 H 0.09 1.92 7.23 -2.39 -0.02 1.90 16 38 H 0.43 0.77 9.10 -74.06 -0.67 0.10 16 Total: -1.00 -74.29 319.75 1.17 -73.11 By element: Atomic # 1 Polarization: 12.79 SS G_CDS: -0.22 Total: 12.57 kcal Atomic # 6 Polarization: 12.65 SS G_CDS: 4.86 Total: 17.51 kcal Atomic # 7 Polarization: -98.81 SS G_CDS: -5.09 Total: -103.89 kcal Atomic # 8 Polarization: -44.78 SS G_CDS: -0.41 Total: -45.19 kcal Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal Total: -74.29 1.17 -73.11 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833619941.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.505 kcal (2) G-P(sol) polarization free energy of solvation -74.287 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.792 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.173 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.114 kcal (6) G-S(sol) free energy of system = (1) + (5) -152.619 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds