Wall clock time and date at job start Mon Mar 30 2020 02:16:59
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.52998 * 1
3 3 H 1.08996 * 110.28776 * 2 1
4 4 C 1.54005 * 110.32643 * 122.13818 * 2 1 3
5 5 N 1.47485 * 107.08612 * 120.30316 * 4 2 1
6 6 C 1.34769 * 127.03606 * 154.51938 * 5 4 2
7 7 O 1.21590 * 119.99925 * 359.97438 * 6 5 4
8 8 N 1.34773 * 120.00494 * 179.97438 * 6 5 4
9 9 C 1.46494 * 120.00506 * 179.72041 * 8 6 5
10 10 C 1.53000 * 109.47500 * 180.27418 * 9 8 6
11 11 C 1.50702 * 109.47512 * 180.02562 * 10 9 8
12 12 H 1.07996 * 119.99504 * 359.97438 * 11 10 9
13 13 C 1.37871 * 120.00236 * 179.97438 * 11 10 9
14 14 N 1.31523 * 119.99883 * 0.02562 * 13 11 10
15 15 Si 1.86796 * 120.00076 * 179.97438 * 13 11 10
16 16 H 1.48498 * 109.47133 * 359.97438 * 15 13 11
17 17 H 1.48499 * 109.47163 * 120.00530 * 15 13 11
18 18 H 1.48507 * 109.47227 * 240.00065 * 15 13 11
19 19 C 1.48115 * 105.92748 * 334.77613 * 5 4 2
20 20 C 1.54590 * 103.42772 * 39.02706 * 19 5 4
21 21 H 1.09002 * 110.57328 * 81.16586 * 20 19 5
22 22 C 1.50701 * 110.83650 * 204.44122 * 20 19 5
23 23 O 1.20823 * 119.99933 * 17.89990 * 22 20 19
24 24 O 1.34224 * 120.00206 * 197.89000 * 22 20 19
25 25 H 1.08993 * 109.47447 * 293.90901 * 1 2 3
26 26 H 1.09000 * 109.47228 * 53.91254 * 1 2 3
27 27 H 1.09007 * 109.47160 * 173.91194 * 1 2 3
28 28 H 1.09000 * 109.91238 * 0.93849 * 4 2 1
29 29 H 1.09005 * 109.91022 * 239.65996 * 4 2 1
30 30 H 0.97006 * 119.99321 * 359.97438 * 8 6 5
31 31 H 1.09003 * 109.47482 * 300.27556 * 9 8 6
32 32 H 1.09005 * 109.46807 * 60.27614 * 9 8 6
33 33 H 1.09003 * 109.46866 * 300.00515 * 10 9 8
34 34 H 1.08997 * 109.47169 * 60.00008 * 10 9 8
35 35 H 0.96997 * 119.99525 * 179.97438 * 14 13 11
36 36 H 1.09001 * 110.65794 * 157.51392 * 19 5 4
37 37 H 1.09003 * 110.66536 * 280.61850 * 19 5 4
38 38 H 0.96698 * 117.00048 * 180.02562 * 24 22 20
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 1 1.9079 1.0223 0.0000
4 6 2.0649 -0.7682 1.2229
5 7 2.8825 -1.8836 0.7102
6 6 3.8946 -2.5069 1.3453
7 8 4.2170 -2.1578 2.4645
8 7 4.5496 -3.5174 0.7399
9 6 5.6537 -4.1909 1.4278
10 6 6.2243 -5.2868 0.5253
11 6 7.3597 -5.9801 1.2331
12 1 7.6461 -5.6698 2.2272
13 6 8.0330 -7.0104 0.6118
14 7 7.6845 -7.3879 -0.5989
15 14 9.4409 -7.8693 1.4890
16 1 9.6342 -7.2600 2.8293
17 1 9.1226 -9.3117 1.6415
18 1 10.6855 -7.7185 0.6931
19 6 2.3677 -2.1742 -0.6478
20 6 2.0693 -0.7720 -1.2263
21 1 2.9825 -0.3104 -1.6020
22 6 1.0245 -0.8503 -2.3095
23 8 0.3175 -1.8261 -2.3975
24 8 0.8790 0.1642 -3.1763
25 1 -0.3634 0.4165 0.9394
26 1 -0.3634 0.6053 -0.8305
27 1 -0.3634 -1.0219 -0.1090
28 1 1.2330 -1.1570 1.8101
29 1 2.6794 -0.1088 1.8359
30 1 4.2921 -3.7962 -0.1528
31 1 6.4349 -3.4662 1.6575
32 1 5.2877 -4.6362 2.3530
33 1 5.4431 -6.0115 0.2956
34 1 6.5902 -4.8416 -0.3999
35 1 8.1584 -8.1126 -1.0362
36 1 3.1244 -2.6828 -1.2452
37 1 1.4553 -2.7682 -0.5944
38 1 0.1954 0.0685 -3.8534
RHF calculation, no. of doubly occupied orbitals= 51
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC000833619941.mol2 38
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Mon Mar 30 2020 02:16:59
Heat of formation + Delta-G solvation = -152.619078 kcal
Electronic energy + Delta-G solvation = -20696.286415 eV
Core-core repulsion = 17344.394191 eV
Total energy + Delta-G solvation = -3351.892224 eV
No. of doubly occupied orbitals = 51
Molecular weight
(most abundant/longest-lived isotopes) = 270.141 amu
Computer time = 0.50 seconds
Orbital eigenvalues (eV)
-42.00451 -40.88670 -38.83648 -37.05144 -36.58197 -34.89874 -33.96460 -31.40716
-31.14122 -27.77554 -26.48691 -25.79848 -23.31374 -22.78695 -21.16273 -20.79345
-19.26956 -19.00553 -18.48859 -17.87318 -17.13433 -16.74209 -16.60030 -16.47075
-15.91534 -15.40063 -15.17393 -14.84457 -14.45720 -14.29373 -13.79676 -13.75229
-13.64463 -13.36562 -13.17818 -12.94633 -12.52413 -12.50165 -12.28322 -12.23861
-12.00178 -11.83929 -11.69706 -11.51469 -11.43289 -11.22873 -10.60934 -10.25538
-9.61316 -8.23714 -6.34042 1.15633 1.41343 1.41996 1.46006 1.56780
1.99371 2.14756 2.41705 3.03242 3.11285 3.24606 3.35747 3.79957
4.02457 4.17894 4.34584 4.41244 4.42622 4.50933 4.52291 4.62696
4.74198 4.81044 4.85496 4.91467 5.06197 5.15392 5.28648 5.31231
5.50182 5.58350 5.61615 5.78963 5.96929 6.17016 6.79215 6.90428
7.00314 7.35384 7.49184 8.88524
Molecular weight = 270.14amu
Principal moments of inertia in cm(-1)
A = 0.030674 B = 0.003475 C = 0.003195
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 912.594935 B = 8054.561808 C = 8760.775799
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.154 4.154
2 C -0.077 4.077
3 H 0.122 0.878
4 C 0.123 3.877
5 N -0.639 5.639
6 C 0.721 3.279
7 O -0.632 6.632
8 N -0.732 5.732
9 C 0.160 3.840
10 C 0.024 3.976
11 C -0.545 4.545
12 H 0.060 0.940
13 C 0.007 3.993
14 N -0.927 5.927
15 Si 0.966 3.034
16 H -0.265 1.265
17 H -0.277 1.277
18 H -0.276 1.276
19 C 0.111 3.889
20 C -0.095 4.095
21 H 0.133 0.867
22 C 0.507 3.493
23 O -0.541 6.541
24 O -0.507 6.507
25 H 0.083 0.917
26 H 0.070 0.930
27 H 0.049 0.951
28 H 0.072 0.928
29 H 0.077 0.923
30 H 0.403 0.597
31 H 0.047 0.953
32 H 0.044 0.956
33 H 0.007 0.993
34 H 0.009 0.991
35 H 0.266 0.734
36 H 0.089 0.911
37 H 0.087 0.913
38 H 0.430 0.570
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges -16.051 17.603 -5.366 24.419
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.212 4.212
2 C -0.096 4.096
3 H 0.140 0.860
4 C 0.000 4.000
5 N -0.377 5.377
6 C 0.423 3.577
7 O -0.514 6.514
8 N -0.387 5.387
9 C 0.036 3.964
10 C -0.014 4.014
11 C -0.583 4.583
12 H 0.078 0.922
13 C -0.192 4.192
14 N -0.567 5.567
15 Si 0.791 3.209
16 H -0.189 1.189
17 H -0.203 1.203
18 H -0.202 1.202
19 C -0.012 4.012
20 C -0.115 4.115
21 H 0.151 0.849
22 C 0.350 3.650
23 O -0.431 6.431
24 O -0.321 6.321
25 H 0.102 0.898
26 H 0.089 0.911
27 H 0.068 0.932
28 H 0.090 0.910
29 H 0.095 0.905
30 H 0.239 0.761
31 H 0.066 0.934
32 H 0.063 0.937
33 H 0.025 0.975
34 H 0.028 0.972
35 H 0.074 0.926
36 H 0.107 0.893
37 H 0.105 0.895
38 H 0.292 0.708
Dipole moment (debyes) X Y Z Total
from point charges -15.580 17.454 -4.350 23.797
hybrid contribution 0.193 -1.041 -0.632 1.233
sum -15.387 16.414 -4.982 23.043
Atomic orbital electron populations
1.22029 0.92844 1.02285 1.04000 1.22062 0.97130 1.00374 0.90005
0.85978 1.22179 0.93988 0.87140 0.96683 1.47736 1.34164 1.37713
1.18054 1.15517 0.78936 0.79842 0.83439 1.90868 1.70434 1.69694
1.20411 1.45286 1.36645 1.35921 1.20858 1.21122 0.86342 0.93696
0.95216 1.19135 0.95170 0.92429 0.94666 1.21484 1.16769 1.17605
1.02472 0.92177 1.25877 1.00115 0.97549 0.95646 1.70073 1.42584
1.29468 1.14544 0.85375 0.78552 0.78151 0.78835 1.18900 1.20285
1.20183 1.22391 1.00623 0.95857 0.82338 1.22064 0.98410 0.98248
0.92780 0.84864 1.22745 0.82241 0.79363 0.80663 1.90753 1.45825
1.33978 1.72523 1.84492 1.59503 1.44861 1.43206 0.89845 0.91116
0.93164 0.90957 0.90476 0.76086 0.93447 0.93724 0.97478 0.97238
0.92557 0.89252 0.89498 0.70802
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 14.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -1.80 7.89 71.98 0.57 -1.23 16
2 C -0.08 -1.00 3.52 -9.90 -0.03 -1.04 16
3 H 0.12 1.10 8.14 -2.39 -0.02 1.08 16
4 C 0.12 2.48 6.62 86.53 0.57 3.06 16
5 N -0.64 -17.00 3.29 -828.05 -2.73 -19.73 16
6 C 0.72 26.32 8.54 179.06 1.53 27.85 16
7 O -0.63 -28.10 16.68 -4.00 -0.07 -28.17 16
8 N -0.73 -27.16 5.53 -478.55 -2.64 -29.81 16
9 C 0.16 7.13 5.61 86.38 0.48 7.61 16
10 C 0.02 1.21 5.09 29.85 0.15 1.36 16
11 C -0.54 -30.72 9.11 25.60 0.23 -30.48 16
12 H 0.06 3.32 7.74 -2.91 -0.02 3.29 16
13 C 0.01 0.38 5.46 84.65 0.46 0.85 16
14 N -0.93 -54.64 13.29 21.45 0.28 -54.35 16
15 Si 0.97 43.86 29.54 68.60 2.03 45.89 16
16 H -0.26 -11.66 7.11 99.48 0.71 -10.95 16
17 H -0.28 -12.25 7.11 99.48 0.71 -11.54 16
18 H -0.28 -12.16 7.11 99.48 0.71 -11.45 16
19 C 0.11 2.31 6.17 86.61 0.53 2.85 16
20 C -0.09 -1.43 3.49 -10.45 -0.04 -1.46 16
21 H 0.13 1.68 8.14 -2.39 -0.02 1.66 16
22 C 0.51 7.76 5.53 71.24 0.39 8.15 16
23 O -0.54 -11.76 15.95 21.97 0.35 -11.41 16
24 O -0.51 -4.92 13.41 -51.35 -0.69 -5.61 16
25 H 0.08 0.77 8.14 -2.39 -0.02 0.75 16
26 H 0.07 0.70 7.50 -2.39 -0.02 0.68 16
27 H 0.05 0.78 7.45 -2.38 -0.02 0.76 16
28 H 0.07 1.42 7.68 -2.39 -0.02 1.41 16
29 H 0.08 1.67 8.05 -2.38 -0.02 1.65 16
30 H 0.40 13.13 6.81 -92.70 -0.63 12.50 16
31 H 0.05 2.17 8.14 -2.39 -0.02 2.16 16
32 H 0.04 2.07 8.14 -2.38 -0.02 2.05 16
33 H 0.01 0.37 8.14 -2.39 -0.02 0.35 16
34 H 0.01 0.50 8.14 -2.39 -0.02 0.48 16
35 H 0.27 14.66 8.31 -92.71 -0.77 13.89 16
36 H 0.09 1.81 6.83 -2.39 -0.02 1.79 16
37 H 0.09 1.92 7.23 -2.39 -0.02 1.90 16
38 H 0.43 0.77 9.10 -74.06 -0.67 0.10 16
Total: -1.00 -74.29 319.75 1.17 -73.11
By element:
Atomic # 1 Polarization: 12.79 SS G_CDS: -0.22 Total: 12.57 kcal
Atomic # 6 Polarization: 12.65 SS G_CDS: 4.86 Total: 17.51 kcal
Atomic # 7 Polarization: -98.81 SS G_CDS: -5.09 Total: -103.89 kcal
Atomic # 8 Polarization: -44.78 SS G_CDS: -0.41 Total: -45.19 kcal
Atomic # 14 Polarization: 43.86 SS G_CDS: 2.03 Total: 45.89 kcal
Total: -74.29 1.17 -73.11 kcal
The number of atoms in the molecule is 38
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC000833619941.mol2 38
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute -79.505 kcal
(2) G-P(sol) polarization free energy of solvation -74.287 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system -153.792 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.173 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.114 kcal
(6) G-S(sol) free energy of system = (1) + (5) -152.619 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 0.50 seconds