Wall clock time and date at job start Mon Mar 30 2020 02:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.63759 * 2 1 4 4 C 1.54315 * 110.72537 * 123.14738 * 2 1 3 5 5 N 1.47023 * 107.27593 * 140.73330 * 4 2 1 6 6 C 1.34773 * 125.65265 * 181.02646 * 5 4 2 7 7 O 1.21593 * 119.99894 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00097 * 179.72599 * 6 5 4 9 9 C 1.46504 * 119.99854 * 180.27545 * 8 6 5 10 10 C 1.53004 * 109.46928 * 179.97438 * 9 8 6 11 11 C 1.50699 * 109.46843 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99981 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99570 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99769 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00300 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47112 * 90.00199 * 15 13 11 17 17 H 1.48499 * 109.47134 * 210.00310 * 15 13 11 18 18 H 1.48498 * 109.47011 * 329.99931 * 15 13 11 19 19 C 1.47424 * 108.69833 * 1.28401 * 5 4 2 20 20 C 1.55124 * 104.72581 * 335.55877 * 19 5 4 21 21 H 1.09000 * 111.22329 * 279.17142 * 20 19 5 22 22 C 1.50702 * 110.90906 * 155.27471 * 20 19 5 23 23 O 1.20824 * 119.99632 * 247.97138 * 22 20 19 24 24 O 1.34231 * 120.00085 * 67.97077 * 22 20 19 25 25 H 1.09003 * 109.46921 * 298.29989 * 1 2 3 26 26 H 1.08998 * 109.47477 * 58.30564 * 1 2 3 27 27 H 1.09000 * 109.46894 * 178.30761 * 1 2 3 28 28 H 1.09003 * 109.88012 * 21.31398 * 4 2 1 29 29 H 1.09000 * 109.88707 * 260.15307 * 4 2 1 30 30 H 0.97000 * 119.99736 * 0.26819 * 8 6 5 31 31 H 1.08998 * 109.46968 * 299.99782 * 9 8 6 32 32 H 1.08997 * 109.47198 * 59.99605 * 9 8 6 33 33 H 1.09007 * 109.46621 * 299.99773 * 10 9 8 34 34 H 1.08997 * 109.46991 * 59.99522 * 10 9 8 35 35 H 0.97005 * 120.00032 * 179.97438 * 14 13 11 36 36 H 1.09007 * 110.36232 * 94.48242 * 19 5 4 37 37 H 1.09004 * 110.37027 * 216.80420 * 19 5 4 38 38 H 0.96697 * 116.99485 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0761 -0.7892 1.2084 5 7 3.2472 -1.5461 0.7424 6 6 3.9958 -2.3768 1.4947 7 8 3.7212 -2.5495 2.6665 8 7 5.0459 -3.0199 0.9468 9 6 5.8561 -3.9275 1.7631 10 6 6.9750 -4.5228 0.9059 11 6 7.8079 -5.4569 1.7454 12 1 7.5639 -5.6102 2.7863 13 6 8.8814 -6.1157 1.1846 14 7 9.6087 -6.9304 1.9173 15 14 9.3030 -5.8510 -0.6158 16 1 10.2524 -4.7160 -0.7402 17 1 9.9279 -7.0815 -1.1640 18 1 8.0637 -5.5451 -1.3746 19 6 3.4706 -1.2412 -0.6825 20 6 2.0828 -0.7947 -1.2125 21 1 1.4510 -1.6541 -1.4372 22 6 2.2290 0.0949 -2.4202 23 8 1.9273 1.2628 -2.3503 24 8 2.6944 -0.4102 -3.5734 25 1 -0.3633 0.4872 0.9049 26 1 -0.3634 0.5399 -0.8744 27 1 -0.3633 -1.0272 -0.0304 28 1 1.3141 -1.4755 1.5779 29 1 2.3712 -0.0993 1.9990 30 1 5.2652 -2.8819 0.0120 31 1 6.2908 -3.3761 2.5968 32 1 5.2268 -4.7303 2.1472 33 1 6.5398 -5.0743 0.0724 34 1 7.6043 -3.7202 0.5215 35 1 10.3638 -7.3942 1.5227 36 1 4.1969 -0.4353 -0.7886 37 1 3.8102 -2.1312 -1.2123 38 1 2.7703 0.1990 -4.3205 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000833619954.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:02 Heat of formation + Delta-G solvation = -126.377180 kcal Electronic energy + Delta-G solvation = -20660.230165 eV Core-core repulsion = 17309.475875 eV Total energy + Delta-G solvation = -3350.754289 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.12811 -39.86440 -37.86350 -36.48252 -34.97112 -33.30569 -32.58999 -30.67317 -30.05062 -26.75876 -25.16768 -24.30644 -22.29706 -20.86478 -20.35524 -19.83666 -18.51716 -18.05622 -17.28615 -16.90844 -16.30417 -15.77216 -15.37073 -14.70037 -14.30609 -14.17473 -13.92613 -13.77219 -13.60945 -13.31016 -12.98448 -12.66777 -12.60089 -12.48744 -11.98034 -11.55583 -11.44486 -11.39943 -11.22812 -11.12121 -10.99377 -10.39579 -10.28453 -9.98482 -9.80345 -9.32821 -8.88931 -8.62307 -8.36665 -6.10859 -4.10935 1.71695 2.42791 2.80610 3.25107 3.32630 3.33846 3.41639 3.77964 4.03048 4.27848 4.37688 4.44225 4.71360 4.86289 4.91534 5.02557 5.18761 5.22053 5.32300 5.38875 5.50065 5.65755 5.73576 5.88726 5.97631 6.06929 6.19455 6.23803 6.57385 6.77734 7.02712 7.23337 7.25117 7.45164 7.67162 8.16889 8.44974 8.82349 8.93980 9.49187 11.02205 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.024104 B = 0.003949 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.356823 B = 7088.105855 C = 8118.491655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.088 4.088 3 H 0.100 0.900 4 C 0.131 3.869 5 N -0.642 5.642 6 C 0.720 3.280 7 O -0.586 6.586 8 N -0.739 5.739 9 C 0.147 3.853 10 C -0.021 4.021 11 C -0.522 4.522 12 H 0.076 0.924 13 C 0.069 3.931 14 N -0.898 5.898 15 Si 0.882 3.118 16 H -0.277 1.277 17 H -0.287 1.287 18 H -0.266 1.266 19 C 0.116 3.884 20 C -0.096 4.096 21 H 0.125 0.875 22 C 0.493 3.507 23 O -0.508 6.508 24 O -0.512 6.512 25 H 0.067 0.933 26 H 0.062 0.938 27 H 0.061 0.939 28 H 0.073 0.927 29 H 0.072 0.928 30 H 0.391 0.609 31 H 0.061 0.939 32 H 0.062 0.938 33 H 0.022 0.978 34 H 0.017 0.983 35 H 0.265 0.735 36 H 0.073 0.927 37 H 0.089 0.911 38 H 0.412 0.588 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.286 14.947 -11.598 25.627 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.107 4.107 3 H 0.119 0.881 4 C 0.008 3.992 5 N -0.383 5.383 6 C 0.421 3.579 7 O -0.464 6.464 8 N -0.393 5.393 9 C 0.025 3.975 10 C -0.059 4.059 11 C -0.561 4.561 12 H 0.095 0.905 13 C -0.133 4.133 14 N -0.537 5.537 15 Si 0.709 3.291 16 H -0.202 1.202 17 H -0.213 1.213 18 H -0.191 1.191 19 C -0.008 4.008 20 C -0.115 4.115 21 H 0.143 0.857 22 C 0.334 3.666 23 O -0.396 6.396 24 O -0.324 6.324 25 H 0.086 0.914 26 H 0.081 0.919 27 H 0.080 0.920 28 H 0.091 0.909 29 H 0.090 0.910 30 H 0.224 0.776 31 H 0.080 0.920 32 H 0.080 0.920 33 H 0.040 0.960 34 H 0.035 0.965 35 H 0.075 0.925 36 H 0.091 0.909 37 H 0.107 0.893 38 H 0.272 0.728 Dipole moment (debyes) X Y Z Total from point charges -17.360 14.645 -10.275 24.928 hybrid contribution 0.568 0.531 -2.015 2.160 sum -16.791 15.177 -12.289 25.755 Atomic orbital electron populations 1.21766 0.92928 1.02455 1.02858 1.22254 0.97164 0.99949 0.91335 0.88145 1.21858 0.87129 0.94339 0.95923 1.47519 1.32214 1.48431 1.10089 1.15496 0.79774 0.78376 0.84219 1.90927 1.72580 1.68146 1.14709 1.45571 1.30762 1.48377 1.14597 1.21419 0.91673 0.90736 0.93681 1.19798 0.93491 0.96268 0.96362 1.20913 1.11845 1.24751 0.98547 0.90550 1.24997 0.95764 0.94609 0.97900 1.69905 1.18673 1.28761 1.36338 0.86751 0.78892 0.77785 0.85639 1.20237 1.21275 1.19093 1.22096 0.94477 1.01612 0.82638 1.22348 0.99897 0.99007 0.90284 0.85678 1.22988 0.72630 0.87056 0.83885 1.90736 1.46173 1.18274 1.84380 1.84556 1.77888 1.47777 1.22169 0.91446 0.91872 0.92036 0.90886 0.90983 0.77554 0.92037 0.91998 0.96015 0.96472 0.92549 0.90915 0.89313 0.72838 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -0.93 9.14 37.16 0.34 -0.59 16 2 C -0.09 -0.70 2.66 -88.79 -0.24 -0.94 16 3 H 0.10 0.87 7.39 -51.93 -0.38 0.49 16 4 C 0.13 1.37 6.46 -3.07 -0.02 1.35 16 5 N -0.64 -8.14 3.32 -176.10 -0.59 -8.73 16 6 C 0.72 12.39 8.49 -86.92 -0.74 11.65 16 7 O -0.59 -12.49 16.67 5.28 0.09 -12.40 16 8 N -0.74 -12.51 5.52 -65.22 -0.36 -12.87 16 9 C 0.15 3.04 5.61 -4.04 -0.02 3.02 16 10 C -0.02 -0.49 4.16 -27.88 -0.12 -0.60 16 11 C -0.52 -14.59 9.66 -34.44 -0.33 -14.92 16 12 H 0.08 2.32 7.99 -52.49 -0.42 1.90 16 13 C 0.07 1.97 5.47 -17.82 -0.10 1.88 16 14 N -0.90 -27.29 13.96 55.43 0.77 -26.52 16 15 Si 0.88 20.91 27.47 -169.99 -4.67 16.24 16 16 H -0.28 -6.44 7.11 56.52 0.40 -6.04 16 17 H -0.29 -6.78 7.11 56.52 0.40 -6.38 16 18 H -0.27 -5.94 6.54 56.52 0.37 -5.57 16 19 C 0.12 1.07 6.04 -2.41 -0.01 1.06 16 20 C -0.10 -0.73 3.01 -89.51 -0.27 -1.00 16 21 H 0.13 0.81 8.05 -51.93 -0.42 0.40 16 22 C 0.49 3.98 7.64 36.01 0.28 4.26 16 23 O -0.51 -5.43 16.47 -18.75 -0.31 -5.74 16 24 O -0.51 -3.14 13.42 -39.26 -0.53 -3.67 16 25 H 0.07 0.40 8.14 -51.93 -0.42 -0.03 16 26 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 27 H 0.06 0.37 8.13 -51.93 -0.42 -0.05 16 28 H 0.07 0.77 7.82 -51.93 -0.41 0.37 16 29 H 0.07 0.79 8.14 -51.93 -0.42 0.37 16 30 H 0.39 5.54 6.94 -40.82 -0.28 5.26 16 31 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 32 H 0.06 1.34 8.14 -51.93 -0.42 0.92 16 33 H 0.02 0.48 7.20 -51.93 -0.37 0.11 16 34 H 0.02 0.38 7.57 -51.93 -0.39 -0.02 16 35 H 0.26 7.49 8.31 -40.82 -0.34 7.15 16 36 H 0.07 0.65 8.04 -51.92 -0.42 0.23 16 37 H 0.09 0.75 7.28 -51.93 -0.38 0.37 16 38 H 0.41 0.88 9.10 45.56 0.41 1.29 16 LS Contribution 320.47 15.07 4.83 4.83 Total: -1.00 -35.25 320.47 -6.75 -42.00 By element: Atomic # 1 Polarization: 6.45 SS G_CDS: -4.76 Total: 1.69 kcal Atomic # 6 Polarization: 6.38 SS G_CDS: -1.23 Total: 5.15 kcal Atomic # 7 Polarization: -47.94 SS G_CDS: -0.17 Total: -48.11 kcal Atomic # 8 Polarization: -21.05 SS G_CDS: -0.75 Total: -21.80 kcal Atomic # 14 Polarization: 20.91 SS G_CDS: -4.67 Total: 16.24 kcal Total LS contribution 4.83 Total: 4.83 kcal Total: -35.25 -6.75 -42.00 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833619954.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -84.377 kcal (2) G-P(sol) polarization free energy of solvation -35.248 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -119.625 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.752 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.000 kcal (6) G-S(sol) free energy of system = (1) + (5) -126.377 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds