Wall clock time and date at job start Mon Mar 30 2020 02:17:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 H 1.09003 * 110.63759 * 2 1 4 4 C 1.54315 * 110.72537 * 123.14738 * 2 1 3 5 5 N 1.47023 * 107.27593 * 140.73330 * 4 2 1 6 6 C 1.34773 * 125.65265 * 181.02646 * 5 4 2 7 7 O 1.21593 * 119.99894 * 359.97438 * 6 5 4 8 8 N 1.34777 * 120.00097 * 179.72599 * 6 5 4 9 9 C 1.46504 * 119.99854 * 180.27545 * 8 6 5 10 10 C 1.53004 * 109.46928 * 179.97438 * 9 8 6 11 11 C 1.50699 * 109.46843 * 180.02562 * 10 9 8 12 12 H 1.08001 * 119.99981 * 359.97438 * 11 10 9 13 13 C 1.37876 * 119.99570 * 179.97438 * 11 10 9 14 14 N 1.31514 * 119.99769 * 179.97438 * 13 11 10 15 15 Si 1.86800 * 120.00300 * 359.97438 * 13 11 10 16 16 H 1.48498 * 109.47112 * 90.00199 * 15 13 11 17 17 H 1.48499 * 109.47134 * 210.00310 * 15 13 11 18 18 H 1.48498 * 109.47011 * 329.99931 * 15 13 11 19 19 C 1.47424 * 108.69833 * 1.28401 * 5 4 2 20 20 C 1.55124 * 104.72581 * 335.55877 * 19 5 4 21 21 H 1.09000 * 111.22329 * 279.17142 * 20 19 5 22 22 C 1.50702 * 110.90906 * 155.27471 * 20 19 5 23 23 O 1.20824 * 119.99632 * 247.97138 * 22 20 19 24 24 O 1.34231 * 120.00085 * 67.97077 * 22 20 19 25 25 H 1.09003 * 109.46921 * 298.29989 * 1 2 3 26 26 H 1.08998 * 109.47477 * 58.30564 * 1 2 3 27 27 H 1.09000 * 109.46894 * 178.30761 * 1 2 3 28 28 H 1.09003 * 109.88012 * 21.31398 * 4 2 1 29 29 H 1.09000 * 109.88707 * 260.15307 * 4 2 1 30 30 H 0.97000 * 119.99736 * 0.26819 * 8 6 5 31 31 H 1.08998 * 109.46968 * 299.99782 * 9 8 6 32 32 H 1.08997 * 109.47198 * 59.99605 * 9 8 6 33 33 H 1.09007 * 109.46621 * 299.99773 * 10 9 8 34 34 H 1.08997 * 109.46991 * 59.99522 * 10 9 8 35 35 H 0.97005 * 120.00032 * 179.97438 * 14 13 11 36 36 H 1.09007 * 110.36232 * 94.48242 * 19 5 4 37 37 H 1.09004 * 110.37027 * 216.80420 * 19 5 4 38 38 H 0.96697 * 116.99485 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9142 1.0201 0.0000 4 6 2.0761 -0.7892 1.2084 5 7 3.2472 -1.5461 0.7424 6 6 3.9958 -2.3768 1.4947 7 8 3.7212 -2.5495 2.6665 8 7 5.0459 -3.0199 0.9468 9 6 5.8561 -3.9275 1.7631 10 6 6.9750 -4.5228 0.9059 11 6 7.8079 -5.4569 1.7454 12 1 7.5639 -5.6102 2.7863 13 6 8.8814 -6.1157 1.1846 14 7 9.6087 -6.9304 1.9173 15 14 9.3030 -5.8510 -0.6158 16 1 10.2524 -4.7160 -0.7402 17 1 9.9279 -7.0815 -1.1640 18 1 8.0637 -5.5451 -1.3746 19 6 3.4706 -1.2412 -0.6825 20 6 2.0828 -0.7947 -1.2125 21 1 1.4510 -1.6541 -1.4372 22 6 2.2290 0.0949 -2.4202 23 8 1.9273 1.2628 -2.3503 24 8 2.6944 -0.4102 -3.5734 25 1 -0.3633 0.4872 0.9049 26 1 -0.3634 0.5399 -0.8744 27 1 -0.3633 -1.0272 -0.0304 28 1 1.3141 -1.4755 1.5779 29 1 2.3712 -0.0993 1.9990 30 1 5.2652 -2.8819 0.0120 31 1 6.2908 -3.3761 2.5968 32 1 5.2268 -4.7303 2.1472 33 1 6.5398 -5.0743 0.0724 34 1 7.6043 -3.7202 0.5215 35 1 10.3638 -7.3942 1.5227 36 1 4.1969 -0.4353 -0.7886 37 1 3.8102 -2.1312 -1.2123 38 1 2.7703 0.1990 -4.3205 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000833619954.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:17:02 Heat of formation + Delta-G solvation = -153.070741 kcal Electronic energy + Delta-G solvation = -20661.387684 eV Core-core repulsion = 17309.475875 eV Total energy + Delta-G solvation = -3351.911809 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.89209 -40.91895 -38.84134 -37.08789 -36.62277 -34.86725 -33.98627 -31.80969 -31.39595 -27.85045 -26.32901 -25.57098 -23.05311 -22.64507 -21.26486 -20.86425 -19.26346 -19.02316 -18.93706 -18.05848 -17.29816 -16.83178 -16.50843 -16.22877 -15.67389 -15.41614 -15.18697 -14.84188 -14.57699 -14.36520 -14.10671 -14.00017 -13.50610 -13.34477 -13.10835 -13.01596 -12.56228 -12.19642 -12.15538 -12.14829 -12.06853 -11.76563 -11.74134 -11.68688 -11.50603 -11.28393 -10.77108 -10.25539 -9.58385 -8.28094 -6.35500 1.09557 1.40956 1.43733 1.48724 1.55010 2.02116 2.11515 2.38880 2.98216 3.07062 3.17539 3.37631 3.81873 4.05385 4.15011 4.33660 4.35643 4.43701 4.45774 4.51857 4.65571 4.72658 4.76754 4.82282 4.99710 5.06214 5.15837 5.25841 5.33678 5.42489 5.44192 5.60453 5.66754 5.95129 6.24745 6.71656 6.92651 6.98158 7.28964 7.50295 8.88763 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.024104 B = 0.003949 C = 0.003448 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1161.356823 B = 7088.105855 C = 8118.491655 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C -0.077 4.077 3 H 0.094 0.906 4 C 0.126 3.874 5 N -0.636 5.636 6 C 0.717 3.283 7 O -0.635 6.635 8 N -0.729 5.729 9 C 0.164 3.836 10 C -0.011 4.011 11 C -0.539 4.539 12 H 0.029 0.971 13 C 0.004 3.996 14 N -0.951 5.951 15 Si 0.959 3.041 16 H -0.266 1.266 17 H -0.287 1.287 18 H -0.235 1.235 19 C 0.110 3.890 20 C -0.089 4.089 21 H 0.143 0.857 22 C 0.503 3.497 23 O -0.537 6.537 24 O -0.508 6.508 25 H 0.071 0.929 26 H 0.064 0.936 27 H 0.069 0.931 28 H 0.072 0.928 29 H 0.063 0.937 30 H 0.408 0.592 31 H 0.041 0.959 32 H 0.043 0.957 33 H 0.039 0.961 34 H 0.035 0.965 35 H 0.268 0.732 36 H 0.081 0.919 37 H 0.104 0.896 38 H 0.431 0.569 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -18.200 16.154 -15.057 28.617 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.196 4.196 2 C -0.096 4.096 3 H 0.113 0.887 4 C 0.004 3.996 5 N -0.374 5.374 6 C 0.418 3.582 7 O -0.516 6.516 8 N -0.384 5.384 9 C 0.039 3.961 10 C -0.049 4.049 11 C -0.577 4.577 12 H 0.047 0.953 13 C -0.193 4.193 14 N -0.591 5.591 15 Si 0.781 3.219 16 H -0.191 1.191 17 H -0.213 1.213 18 H -0.157 1.157 19 C -0.013 4.013 20 C -0.109 4.109 21 H 0.161 0.839 22 C 0.345 3.655 23 O -0.427 6.427 24 O -0.322 6.322 25 H 0.090 0.910 26 H 0.083 0.917 27 H 0.088 0.912 28 H 0.091 0.909 29 H 0.082 0.918 30 H 0.245 0.755 31 H 0.060 0.940 32 H 0.062 0.938 33 H 0.057 0.943 34 H 0.054 0.946 35 H 0.077 0.923 36 H 0.099 0.901 37 H 0.122 0.878 38 H 0.293 0.707 Dipole moment (debyes) X Y Z Total from point charges -18.310 15.899 -13.808 27.905 hybrid contribution 0.821 0.166 -0.876 1.213 sum -17.489 16.065 -14.684 27.921 Atomic orbital electron populations 1.21748 0.91592 1.03109 1.03186 1.22152 0.98088 0.99102 0.90295 0.88733 1.22024 0.86365 0.94173 0.97066 1.47450 1.31683 1.46891 1.11415 1.15590 0.79929 0.78763 0.83883 1.90894 1.73812 1.69832 1.17065 1.45159 1.30443 1.47817 1.15005 1.20920 0.91249 0.90573 0.93309 1.19641 0.93455 0.95765 0.96003 1.21248 1.13023 1.26087 0.97386 0.95285 1.26085 0.95379 0.93965 1.03883 1.70081 1.19615 1.30321 1.39133 0.85536 0.79917 0.77889 0.78519 1.19060 1.21310 1.15736 1.22337 0.95807 1.02662 0.80454 1.22316 0.99064 0.99426 0.90076 0.83927 1.22863 0.71963 0.86356 0.84297 1.90741 1.47588 1.19434 1.84925 1.84512 1.77104 1.48250 1.22285 0.90966 0.91736 0.91204 0.90945 0.91829 0.75524 0.94031 0.93816 0.94304 0.94650 0.92341 0.90114 0.87810 0.70704 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.50 9.14 71.98 0.66 -0.85 16 2 C -0.08 -1.08 2.66 -9.61 -0.03 -1.11 16 3 H 0.09 1.48 7.39 -2.39 -0.02 1.47 16 4 C 0.13 2.50 6.46 86.73 0.56 3.06 16 5 N -0.64 -15.07 3.32 -829.32 -2.76 -17.82 16 6 C 0.72 24.13 8.49 179.06 1.52 25.65 16 7 O -0.63 -27.47 16.67 -4.01 -0.07 -27.53 16 8 N -0.73 -23.55 5.52 -478.52 -2.64 -26.19 16 9 C 0.16 6.76 5.61 86.38 0.48 7.25 16 10 C -0.01 -0.48 4.16 29.85 0.12 -0.35 16 11 C -0.54 -30.69 9.66 25.60 0.25 -30.44 16 12 H 0.03 1.86 7.99 -2.91 -0.02 1.83 16 13 C 0.00 0.22 5.47 84.65 0.46 0.68 16 14 N -0.95 -59.23 13.96 21.45 0.30 -58.93 16 15 Si 0.96 41.78 27.47 68.60 1.88 43.66 16 16 H -0.27 -11.08 7.11 99.48 0.71 -10.37 16 17 H -0.29 -12.46 7.11 99.48 0.71 -11.76 16 18 H -0.23 -8.96 6.54 99.48 0.65 -8.31 16 19 C 0.11 1.71 6.04 86.93 0.53 2.23 16 20 C -0.09 -1.10 3.01 -10.07 -0.03 -1.13 16 21 H 0.14 1.31 8.05 -2.39 -0.02 1.30 16 22 C 0.50 6.60 7.64 71.24 0.54 7.14 16 23 O -0.54 -10.23 16.47 21.97 0.36 -9.87 16 24 O -0.51 -4.40 13.42 -51.42 -0.69 -5.09 16 25 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 26 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 27 H 0.07 0.65 8.13 -2.39 -0.02 0.63 16 28 H 0.07 1.46 7.82 -2.39 -0.02 1.44 16 29 H 0.06 1.37 8.14 -2.39 -0.02 1.35 16 30 H 0.41 10.29 6.94 -92.71 -0.64 9.64 16 31 H 0.04 1.87 8.14 -2.39 -0.02 1.85 16 32 H 0.04 1.95 8.14 -2.39 -0.02 1.93 16 33 H 0.04 1.60 7.20 -2.38 -0.02 1.58 16 34 H 0.04 1.45 7.57 -2.39 -0.02 1.43 16 35 H 0.27 15.46 8.31 -92.70 -0.77 14.68 16 36 H 0.08 1.18 8.04 -2.38 -0.02 1.16 16 37 H 0.10 1.34 7.28 -2.38 -0.02 1.32 16 38 H 0.43 0.36 9.10 -74.06 -0.67 -0.31 16 Total: -1.00 -78.54 320.47 1.17 -77.36 By element: Atomic # 1 Polarization: 12.56 SS G_CDS: -0.29 Total: 12.27 kcal Atomic # 6 Polarization: 7.07 SS G_CDS: 5.07 Total: 12.14 kcal Atomic # 7 Polarization: -97.85 SS G_CDS: -5.10 Total: -102.94 kcal Atomic # 8 Polarization: -42.10 SS G_CDS: -0.40 Total: -42.49 kcal Atomic # 14 Polarization: 41.78 SS G_CDS: 1.88 Total: 43.66 kcal Total: -78.54 1.17 -77.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000833619954.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -75.706 kcal (2) G-P(sol) polarization free energy of solvation -78.537 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.243 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.172 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.365 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.071 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds