Wall clock time and date at job start Mon Mar 30 2020 01:03:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52997 * 109.47312 * 2 1 4 4 C 1.53006 * 109.47215 * 239.99600 * 2 1 3 5 5 C 1.50690 * 109.46872 * 60.00229 * 4 2 1 6 6 H 1.08000 * 120.00449 * 0.02562 * 5 4 2 7 7 C 1.37883 * 119.99794 * 179.97438 * 5 4 2 8 8 N 1.31515 * 119.99792 * 359.97438 * 7 5 4 9 9 Si 1.86806 * 119.99886 * 180.02562 * 7 5 4 10 10 H 1.48497 * 109.47329 * 0.02562 * 9 7 5 11 11 H 1.48501 * 109.46853 * 120.00004 * 9 7 5 12 12 H 1.48499 * 109.46898 * 239.99835 * 9 7 5 13 13 C 1.53008 * 109.46861 * 119.99952 * 2 1 3 14 14 N 1.46501 * 109.46688 * 299.99871 * 13 2 1 15 15 C 1.34783 * 119.99603 * 180.02562 * 14 13 2 16 16 O 1.21275 * 120.00183 * 359.97438 * 15 14 13 17 17 C 1.50697 * 119.99687 * 180.02562 * 15 14 13 18 18 H 1.09001 * 115.55460 * 34.27333 * 17 15 14 19 19 C 1.53006 * 117.49508 * 248.60743 * 17 15 14 20 20 C 1.52997 * 117.49950 * 179.97438 * 17 15 14 21 21 H 1.09002 * 117.49910 * 359.97438 * 20 17 15 22 22 N 1.46497 * 117.50064 * 214.97704 * 20 17 15 23 23 O 1.21799 * 120.00411 * 299.98327 * 22 20 17 24 24 O 1.21807 * 120.00195 * 119.98396 * 22 20 17 25 25 H 1.08997 * 109.47332 * 300.00392 * 1 2 3 26 26 H 1.09003 * 109.46880 * 60.00059 * 1 2 3 27 27 H 1.08999 * 109.47304 * 179.97438 * 1 2 3 28 28 H 1.09004 * 109.46794 * 179.97438 * 3 2 1 29 29 H 1.09001 * 109.46983 * 299.99268 * 3 2 1 30 30 H 1.08997 * 109.47242 * 59.99552 * 3 2 1 31 31 H 1.08997 * 109.47002 * 180.02562 * 4 2 1 32 32 H 1.08997 * 109.46865 * 300.00278 * 4 2 1 33 33 H 0.97002 * 119.99348 * 180.02562 * 8 7 5 34 34 H 1.08997 * 109.46811 * 180.02562 * 13 2 1 35 35 H 1.09004 * 109.47054 * 59.99513 * 13 2 1 36 36 H 0.96994 * 120.00358 * 359.97438 * 14 13 2 37 37 H 1.08990 * 117.50086 * 359.97438 * 19 17 15 38 38 H 1.09004 * 117.49623 * 145.02605 * 19 17 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 6 2.0400 -0.7214 -1.2492 5 6 1.5378 -0.0110 -2.4796 6 1 0.9172 0.8673 -2.3806 7 6 1.8713 -0.4819 -3.7319 8 7 2.6282 -1.5506 -3.8525 9 14 1.2493 0.3991 -5.2572 10 1 0.4247 1.5662 -4.8532 11 1 2.4047 0.8659 -6.0650 12 1 0.4246 -0.5341 -6.0661 13 6 2.0399 -0.7213 1.2493 14 7 1.5516 -0.0306 2.4454 15 6 1.8775 -0.4907 3.6696 16 8 2.5747 -1.4768 3.7810 17 6 1.3747 0.2194 4.9000 18 1 0.3824 0.6624 4.8147 19 6 2.4039 0.9528 5.7625 20 6 1.7789 -0.3522 6.2604 21 1 2.4081 -1.2422 6.2655 22 7 0.8026 -0.2625 7.3489 23 8 0.3988 0.8262 7.7168 24 8 0.3945 -1.2766 7.8862 25 1 -0.3634 0.5139 0.8899 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3634 -1.0276 -0.0005 28 1 3.1301 1.4424 0.0005 29 1 1.6768 1.9562 -0.8901 30 1 1.6767 1.9563 0.8899 31 1 3.1300 -0.7217 -1.2490 32 1 1.6767 -1.7490 -1.2491 33 1 2.8632 -1.8815 -4.7335 34 1 3.1299 -0.7209 1.2496 35 1 1.6765 -1.7489 1.2494 36 1 0.9943 0.7583 2.3564 37 1 3.4446 0.9213 5.4402 38 1 2.0885 1.8780 6.2450 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000839771394.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:03:28 Heat of formation + Delta-G solvation = -55.683461 kcal Electronic energy + Delta-G solvation = -20519.309191 eV Core-core repulsion = 17171.620411 eV Total energy + Delta-G solvation = -3347.688780 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -43.42432 -41.29888 -39.04614 -37.87253 -37.28171 -35.35418 -33.99596 -29.52827 -28.94727 -27.97229 -27.87818 -25.66682 -24.25865 -23.29019 -21.57348 -20.24174 -19.88675 -19.51818 -18.61779 -18.36687 -18.02558 -17.01353 -16.58976 -16.44698 -15.60581 -15.34252 -14.87778 -14.56929 -14.40691 -13.95705 -13.86525 -13.72531 -12.91712 -12.77711 -12.71296 -12.64834 -12.60177 -12.44646 -12.35184 -12.27597 -12.24589 -12.10177 -11.97084 -11.56093 -11.38462 -10.96283 -10.85422 -10.53350 -10.22907 -8.15618 -6.23077 -0.74601 0.43230 1.14052 1.40950 1.42746 1.53662 1.87612 2.13656 2.43445 2.65807 3.08864 3.19566 3.39933 3.62063 3.92687 4.04969 4.08803 4.20158 4.48606 4.57434 4.65759 4.68940 4.74785 4.94677 5.05676 5.12199 5.16260 5.29776 5.42655 5.50237 5.53114 5.55298 5.78831 5.89226 6.27679 6.37286 6.40720 6.92843 7.00811 7.45110 8.97018 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.048226 B = 0.003148 C = 0.003096 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 580.455361 B = 8893.415609 C = 9040.628867 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.065 4.065 3 C -0.123 4.123 4 C 0.039 3.961 5 C -0.512 4.512 6 H 0.074 0.926 7 C -0.005 4.005 8 N -0.939 5.939 9 Si 0.956 3.044 10 H -0.256 1.256 11 H -0.285 1.285 12 H -0.286 1.286 13 C 0.140 3.860 14 N -0.694 5.694 15 C 0.538 3.462 16 O -0.578 6.578 17 C -0.138 4.138 18 H 0.171 0.829 19 C -0.074 4.074 20 C -0.080 4.080 21 H 0.177 0.823 22 N 0.017 4.983 23 O -0.135 6.135 24 O -0.213 6.213 25 H 0.072 0.928 26 H 0.055 0.945 27 H 0.035 0.965 28 H 0.039 0.961 29 H 0.054 0.946 30 H 0.074 0.926 31 H -0.012 1.012 32 H -0.015 1.015 33 H 0.259 0.741 34 H 0.054 0.946 35 H 0.048 0.952 36 H 0.418 0.582 37 H 0.148 0.852 38 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.861 9.913 17.812 20.584 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C -0.066 4.066 3 C -0.180 4.180 4 C 0.001 3.999 5 C -0.550 4.550 6 H 0.092 0.908 7 C -0.202 4.202 8 N -0.580 5.580 9 Si 0.782 3.218 10 H -0.179 1.179 11 H -0.211 1.211 12 H -0.212 1.212 13 C 0.016 3.984 14 N -0.346 5.346 15 C 0.323 3.677 16 O -0.459 6.459 17 C -0.160 4.160 18 H 0.189 0.811 19 C -0.111 4.111 20 C -0.180 4.180 21 H 0.194 0.806 22 N 0.536 4.464 23 O -0.364 6.364 24 O -0.418 6.418 25 H 0.091 0.909 26 H 0.074 0.926 27 H 0.054 0.946 28 H 0.058 0.942 29 H 0.073 0.927 30 H 0.093 0.907 31 H 0.006 0.994 32 H 0.003 0.997 33 H 0.068 0.932 34 H 0.073 0.927 35 H 0.066 0.934 36 H 0.257 0.743 37 H 0.166 0.834 38 H 0.184 0.816 Dipole moment (debyes) X Y Z Total from point charges -1.803 8.960 17.189 19.467 hybrid contribution -0.412 -0.305 -1.099 1.212 sum -2.215 8.655 16.090 18.404 Atomic orbital electron populations 1.21724 0.93659 1.00959 1.01814 1.20723 0.96648 0.96521 0.92676 1.21710 1.00086 0.94331 1.01864 1.18980 0.94391 0.94160 0.92351 1.21632 1.30297 1.12049 0.91047 0.90839 1.25936 0.95694 0.95856 1.02716 1.70122 1.38807 1.25046 1.24027 0.85519 0.78049 0.78859 0.79357 1.17944 1.21110 1.21236 1.21310 0.98275 0.95382 0.83413 1.45810 1.52496 1.31952 1.04304 1.19630 0.79912 0.83651 0.84472 1.90760 1.40075 1.27894 1.87135 1.22784 1.05487 1.01915 0.85846 0.81129 1.23982 1.00249 0.92989 0.93879 1.25103 0.97568 1.07633 0.87686 0.80600 1.44060 1.00535 0.99991 1.01841 1.94497 1.59594 1.15554 1.66725 1.94619 1.61974 1.26245 1.58992 0.90916 0.92600 0.94559 0.94161 0.92709 0.90729 0.99392 0.99688 0.93202 0.92738 0.93370 0.74257 0.83392 0.81602 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -3.78 8.05 71.98 0.58 -3.20 16 2 C -0.07 -2.22 0.54 -52.18 -0.03 -2.25 16 3 C -0.12 -3.61 8.05 71.98 0.58 -3.03 16 4 C 0.04 1.87 4.04 29.85 0.12 1.99 16 5 C -0.51 -26.38 7.65 25.60 0.20 -26.18 16 6 H 0.07 3.53 5.68 -2.91 -0.02 3.51 16 7 C -0.01 -0.28 5.46 84.66 0.46 0.18 16 8 N -0.94 -55.85 13.29 21.45 0.28 -55.57 16 9 Si 0.96 42.45 29.54 68.60 2.03 44.48 16 10 H -0.26 -10.53 7.11 99.48 0.71 -9.83 16 11 H -0.28 -12.58 7.11 99.48 0.71 -11.87 16 12 H -0.29 -12.69 7.11 99.48 0.71 -11.98 16 13 C 0.14 4.36 4.57 86.38 0.39 4.76 16 14 N -0.69 -15.02 4.96 -463.04 -2.30 -17.32 16 15 C 0.54 11.94 7.61 87.66 0.67 12.61 16 16 O -0.58 -18.28 16.26 -3.01 -0.05 -18.33 16 17 C -0.14 -1.85 6.08 -11.54 -0.07 -1.92 16 18 H 0.17 1.48 8.14 -2.39 -0.02 1.46 16 19 C -0.07 -0.62 9.72 30.60 0.30 -0.32 16 20 C -0.08 -1.28 6.43 45.00 0.29 -1.00 16 21 H 0.18 3.20 7.67 -2.39 -0.02 3.18 16 22 N 0.02 0.35 4.33 -169.36 -0.73 -0.39 16 23 O -0.14 -2.68 18.28 18.89 0.35 -2.33 16 24 O -0.21 -5.59 19.24 18.88 0.36 -5.23 16 25 H 0.07 1.56 6.86 -2.39 -0.02 1.55 16 26 H 0.05 1.87 6.62 -2.39 -0.02 1.85 16 27 H 0.04 1.18 8.14 -2.39 -0.02 1.16 16 28 H 0.04 1.24 8.14 -2.39 -0.02 1.23 16 29 H 0.05 1.79 6.62 -2.39 -0.02 1.77 16 30 H 0.07 1.51 6.86 -2.39 -0.02 1.49 16 31 H -0.01 -0.66 8.14 -2.39 -0.02 -0.68 16 32 H -0.02 -0.83 8.14 -2.39 -0.02 -0.85 16 33 H 0.26 14.65 8.31 -92.71 -0.77 13.88 16 34 H 0.05 1.85 8.14 -2.39 -0.02 1.83 16 35 H 0.05 1.70 8.14 -2.39 -0.02 1.68 16 36 H 0.42 6.32 6.16 -92.71 -0.57 5.75 16 37 H 0.15 0.97 8.14 -2.39 -0.02 0.95 16 38 H 0.17 0.63 7.63 -2.38 -0.02 0.61 16 Total: -1.00 -70.28 322.94 3.93 -66.35 By element: Atomic # 1 Polarization: 6.19 SS G_CDS: 0.51 Total: 6.69 kcal Atomic # 6 Polarization: -21.85 SS G_CDS: 3.49 Total: -18.36 kcal Atomic # 7 Polarization: -70.53 SS G_CDS: -2.75 Total: -73.27 kcal Atomic # 8 Polarization: -26.55 SS G_CDS: 0.66 Total: -25.89 kcal Atomic # 14 Polarization: 42.45 SS G_CDS: 2.03 Total: 44.48 kcal Total: -70.28 3.93 -66.35 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000839771394.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 10.664 kcal (2) G-P(sol) polarization free energy of solvation -70.281 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.617 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.934 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.347 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.683 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds