Wall clock time and date at job start Mon Mar 30 2020 02:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.87094 * 2 1 4 4 O 1.43749 * 110.00311 * 238.91484 * 2 1 3 5 5 C 1.44379 * 106.97200 * 267.01641 * 4 2 1 6 6 C 1.55232 * 103.56880 * 320.01120 * 5 4 2 7 7 C 1.54099 * 109.88349 * 121.00565 * 2 1 3 8 8 H 1.09003 * 110.48459 * 358.73394 * 7 2 1 9 9 C 1.50696 * 110.49234 * 236.22145 * 7 2 1 10 10 O 1.21281 * 119.99694 * 1.83988 * 9 7 2 11 11 N 1.34777 * 120.00458 * 181.83993 * 9 7 2 12 12 N 1.40095 * 120.00221 * 179.97438 * 11 9 7 13 13 C 1.34777 * 120.00220 * 180.02562 * 12 11 9 14 14 O 1.21286 * 119.99444 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.00076 * 180.02562 * 13 12 11 16 16 C 1.53002 * 109.46779 * 179.97438 * 15 13 12 17 17 C 1.50706 * 109.47153 * 179.97438 * 16 15 13 18 18 H 1.07998 * 119.99503 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00434 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99826 * 359.72891 * 19 17 16 21 21 Si 1.86800 * 120.00406 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72558 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72681 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72491 * 21 19 17 25 25 H 1.09001 * 109.46729 * 298.99433 * 1 2 3 26 26 H 1.08997 * 109.47232 * 58.99334 * 1 2 3 27 27 H 1.08996 * 109.46844 * 178.99764 * 1 2 3 28 28 H 1.09002 * 110.61922 * 78.43973 * 5 4 2 29 29 H 1.09004 * 110.61653 * 201.27851 * 5 4 2 30 30 H 1.08998 * 110.88979 * 278.74922 * 6 5 4 31 31 H 1.08997 * 111.02200 * 155.07005 * 6 5 4 32 32 H 0.97004 * 119.99647 * 0.02562 * 11 9 7 33 33 H 0.97004 * 120.00128 * 359.97438 * 12 11 9 34 34 H 1.08999 * 109.47048 * 60.00202 * 15 13 12 35 35 H 1.08993 * 109.47202 * 299.99668 * 15 13 12 36 36 H 1.09004 * 109.47178 * 60.00383 * 16 15 13 37 37 H 1.08993 * 109.47411 * 300.00065 * 16 15 13 38 38 H 0.97000 * 120.00236 * 0.27947 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 8 2.0217 -0.6974 -1.1568 5 6 2.2334 -2.0702 -0.7629 6 6 2.8351 -1.9513 0.6631 7 6 2.0541 -0.7465 1.2421 8 1 1.2238 -1.0908 1.8587 9 6 2.9715 0.1411 2.0429 10 8 3.1720 1.2834 1.6881 11 7 3.5693 -0.3344 3.1534 12 7 4.4226 0.4907 3.8975 13 6 5.0208 0.0150 5.0077 14 8 4.8199 -1.1272 5.3627 15 6 5.9382 0.9027 5.8085 16 6 6.4804 0.1248 7.0093 17 6 7.3984 1.0123 7.8098 18 1 7.5769 2.0295 7.4939 19 6 8.0104 0.5257 8.9454 20 7 7.7888 -0.7114 9.3330 21 14 9.1477 1.6259 9.9380 22 1 9.6693 0.8728 11.1068 23 1 10.2818 2.0637 9.0850 24 1 8.3962 2.8160 10.4114 25 1 -0.3633 0.4982 0.8989 26 1 -0.3633 0.5294 -0.8808 27 1 -0.3633 -1.0275 -0.0180 28 1 1.2878 -2.6117 -0.7347 29 1 2.9346 -2.5597 -1.4388 30 1 3.9028 -1.7371 0.6179 31 1 2.6449 -2.8536 1.2443 32 1 3.4092 -1.2481 3.4369 33 1 4.5836 1.4041 3.6134 34 1 5.3854 1.7739 6.1599 35 1 6.7681 1.2278 5.1811 36 1 7.0332 -0.7466 6.6582 37 1 5.6504 -0.2000 7.6366 38 1 7.1981 -1.2827 8.8178 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000843659762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:57 Heat of formation + Delta-G solvation = -106.580889 kcal Electronic energy + Delta-G solvation = -20334.109948 eV Core-core repulsion = 16984.214091 eV Total energy + Delta-G solvation = -3349.895858 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.98777 -39.64274 -38.47455 -35.39182 -33.89373 -33.19307 -31.83251 -31.43591 -30.21096 -27.22571 -25.24418 -23.02466 -22.31013 -21.91866 -21.07478 -19.89779 -18.06116 -17.88486 -16.97553 -16.62341 -16.32520 -15.69257 -15.44918 -15.02072 -14.81359 -14.27719 -13.89994 -13.74866 -13.69435 -13.17657 -12.87020 -12.50099 -12.36332 -12.29366 -11.88142 -11.62334 -11.45601 -11.30448 -11.25136 -10.87097 -10.40892 -10.22553 -10.20685 -10.02684 -10.00055 -9.66714 -8.61973 -8.40411 -8.33005 -6.37923 -4.08940 1.78616 2.13784 2.90236 3.43098 3.44275 3.45118 3.63955 3.78596 3.98354 4.27745 4.40491 4.54029 4.63538 4.69357 4.79814 4.99922 5.10776 5.13285 5.23214 5.28174 5.39243 5.39884 5.51216 5.72176 5.83014 5.94234 5.94838 6.48507 6.51966 6.62390 6.71687 7.40135 7.45098 7.53088 7.78328 8.10910 8.41719 8.47491 8.84932 9.64616 11.03052 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.053029 B = 0.002872 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.883851 B = 9748.408752 C = 9976.515298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.170 4.170 2 C 0.082 3.918 3 H 0.119 0.881 4 O -0.367 6.367 5 C 0.047 3.953 6 C -0.150 4.150 7 C -0.133 4.133 8 H 0.117 0.883 9 C 0.520 3.480 10 O -0.539 6.539 11 N -0.519 5.519 12 N -0.536 5.536 13 C 0.513 3.487 14 O -0.537 6.537 15 C -0.112 4.112 16 C 0.025 3.975 17 C -0.611 4.611 18 H 0.051 0.949 19 C 0.016 3.984 20 N -0.909 5.909 21 Si 1.070 2.930 22 H -0.282 1.282 23 H -0.288 1.288 24 H -0.288 1.288 25 H 0.068 0.932 26 H 0.068 0.932 27 H 0.058 0.942 28 H 0.064 0.936 29 H 0.097 0.903 30 H 0.085 0.915 31 H 0.093 0.907 32 H 0.430 0.570 33 H 0.430 0.570 34 H 0.089 0.911 35 H 0.089 0.911 36 H 0.016 0.984 37 H 0.017 0.983 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -13.943 -1.224 -19.120 23.696 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.227 4.227 2 C 0.024 3.976 3 H 0.137 0.863 4 O -0.285 6.285 5 C -0.030 4.030 6 C -0.188 4.188 7 C -0.156 4.156 8 H 0.135 0.865 9 C 0.306 3.694 10 O -0.415 6.415 11 N -0.265 5.265 12 N -0.287 5.287 13 C 0.302 3.698 14 O -0.411 6.411 15 C -0.154 4.154 16 C -0.012 4.012 17 C -0.649 4.649 18 H 0.069 0.931 19 C -0.188 4.188 20 N -0.545 5.545 21 Si 0.898 3.102 22 H -0.207 1.207 23 H -0.214 1.214 24 H -0.214 1.214 25 H 0.087 0.913 26 H 0.087 0.913 27 H 0.078 0.922 28 H 0.082 0.918 29 H 0.115 0.885 30 H 0.104 0.896 31 H 0.112 0.888 32 H 0.272 0.728 33 H 0.272 0.728 34 H 0.107 0.893 35 H 0.107 0.893 36 H 0.035 0.965 37 H 0.035 0.965 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -12.936 -1.114 -17.947 22.151 hybrid contribution -1.112 -0.196 -1.140 1.604 sum -14.048 -1.310 -19.086 23.735 Atomic orbital electron populations 1.22281 0.94867 1.02535 1.03041 1.22789 0.94011 0.98328 0.82455 0.86319 1.88966 1.85941 1.20630 1.32996 1.23594 1.00035 0.84791 0.94563 1.23270 1.01131 0.97103 0.97271 1.22718 0.98536 0.96260 0.98044 0.86517 1.20467 0.80883 0.88475 0.79584 1.90713 1.63180 1.18714 1.68846 1.44853 1.43692 1.14055 1.23898 1.45544 1.44692 1.13618 1.24879 1.22093 0.79925 0.89482 0.78340 1.90681 1.62516 1.19270 1.68591 1.21756 0.96729 0.98699 0.98191 1.19052 0.96055 0.95430 0.90686 1.22004 1.30677 0.99696 1.12501 0.93058 1.25864 0.98494 0.98150 0.96314 1.70749 1.35911 1.06855 1.40988 0.83527 0.75757 0.74715 0.76156 1.20743 1.21402 1.21405 0.91281 0.91308 0.92246 0.91757 0.88472 0.89629 0.88798 0.72791 0.72833 0.89266 0.89265 0.96525 0.96517 0.91762 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.20 9.31 37.16 0.35 -0.86 16 2 C 0.08 0.77 3.70 -26.16 -0.10 0.67 16 3 H 0.12 1.35 6.44 -51.93 -0.33 1.02 16 4 O -0.37 -3.77 11.20 -35.23 -0.39 -4.16 16 5 C 0.05 0.33 7.67 38.34 0.29 0.62 16 6 C -0.15 -1.05 6.69 -24.60 -0.16 -1.21 16 7 C -0.13 -1.10 3.06 -90.25 -0.28 -1.38 16 8 H 0.12 0.70 7.70 -51.93 -0.40 0.30 16 9 C 0.52 6.13 7.15 -10.99 -0.08 6.05 16 10 O -0.54 -7.99 15.10 5.56 0.08 -7.90 16 11 N -0.52 -6.51 6.22 31.22 0.19 -6.31 16 12 N -0.54 -7.81 6.26 31.22 0.20 -7.61 16 13 C 0.51 9.29 7.95 -10.99 -0.09 9.20 16 14 O -0.54 -11.47 15.82 5.55 0.09 -11.38 16 15 C -0.11 -2.18 5.64 -27.88 -0.16 -2.33 16 16 C 0.03 0.66 3.57 -27.88 -0.10 0.56 16 17 C -0.61 -17.12 9.11 -34.44 -0.31 -17.43 16 18 H 0.05 1.37 7.74 -52.49 -0.41 0.96 16 19 C 0.02 0.47 5.46 -17.82 -0.10 0.37 16 20 N -0.91 -28.20 13.65 55.43 0.76 -27.44 16 21 Si 1.07 25.03 29.90 -169.99 -5.08 19.95 16 22 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 23 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 24 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 25 H 0.07 0.45 8.14 -51.93 -0.42 0.02 16 26 H 0.07 0.49 8.14 -51.93 -0.42 0.06 16 27 H 0.06 0.35 8.13 -51.93 -0.42 -0.07 16 28 H 0.06 0.35 8.13 -51.93 -0.42 -0.08 16 29 H 0.10 0.57 8.14 -51.93 -0.42 0.15 16 30 H 0.09 0.71 7.86 -51.93 -0.41 0.30 16 31 H 0.09 0.46 8.14 -51.93 -0.42 0.04 16 32 H 0.43 4.93 8.00 -182.60 -1.46 3.47 16 33 H 0.43 5.67 8.00 -182.60 -1.46 4.21 16 34 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 35 H 0.09 1.58 8.14 -51.93 -0.42 1.16 16 36 H 0.02 0.46 7.97 -51.93 -0.41 0.04 16 37 H 0.02 0.46 7.96 -51.93 -0.41 0.05 16 38 H 0.27 8.51 7.22 -40.82 -0.29 8.21 16 LS Contribution 322.79 15.07 4.86 4.86 Total: -1.00 -35.12 322.79 -7.80 -42.92 By element: Atomic # 1 Polarization: 10.59 SS G_CDS: -7.77 Total: 2.82 kcal Atomic # 6 Polarization: -5.01 SS G_CDS: -0.73 Total: -5.74 kcal Atomic # 7 Polarization: -42.52 SS G_CDS: 1.15 Total: -41.37 kcal Atomic # 8 Polarization: -23.22 SS G_CDS: -0.22 Total: -23.44 kcal Atomic # 14 Polarization: 25.03 SS G_CDS: -5.08 Total: 19.95 kcal Total LS contribution 4.86 Total: 4.86 kcal Total: -35.12 -7.80 -42.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843659762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -63.663 kcal (2) G-P(sol) polarization free energy of solvation -35.122 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -98.785 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.796 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.918 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.581 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds