Wall clock time and date at job start Mon Mar 30 2020 02:13:57 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.09006 * 109.87094 * 2 1 4 4 O 1.43749 * 110.00311 * 238.91484 * 2 1 3 5 5 C 1.44379 * 106.97200 * 267.01641 * 4 2 1 6 6 C 1.55232 * 103.56880 * 320.01120 * 5 4 2 7 7 C 1.54099 * 109.88349 * 121.00565 * 2 1 3 8 8 H 1.09003 * 110.48459 * 358.73394 * 7 2 1 9 9 C 1.50696 * 110.49234 * 236.22145 * 7 2 1 10 10 O 1.21281 * 119.99694 * 1.83988 * 9 7 2 11 11 N 1.34777 * 120.00458 * 181.83993 * 9 7 2 12 12 N 1.40095 * 120.00221 * 179.97438 * 11 9 7 13 13 C 1.34777 * 120.00220 * 180.02562 * 12 11 9 14 14 O 1.21286 * 119.99444 * 359.97438 * 13 12 11 15 15 C 1.50696 * 120.00076 * 180.02562 * 13 12 11 16 16 C 1.53002 * 109.46779 * 179.97438 * 15 13 12 17 17 C 1.50706 * 109.47153 * 179.97438 * 16 15 13 18 18 H 1.07998 * 119.99503 * 0.02562 * 17 16 15 19 19 C 1.37871 * 120.00434 * 180.02562 * 17 16 15 20 20 N 1.31516 * 119.99826 * 359.72891 * 19 17 16 21 21 Si 1.86800 * 120.00406 * 180.02562 * 19 17 16 22 22 H 1.48501 * 109.47364 * 179.72558 * 21 19 17 23 23 H 1.48508 * 109.46883 * 299.72681 * 21 19 17 24 24 H 1.48497 * 109.46870 * 59.72491 * 21 19 17 25 25 H 1.09001 * 109.46729 * 298.99433 * 1 2 3 26 26 H 1.08997 * 109.47232 * 58.99334 * 1 2 3 27 27 H 1.08996 * 109.46844 * 178.99764 * 1 2 3 28 28 H 1.09002 * 110.61922 * 78.43973 * 5 4 2 29 29 H 1.09004 * 110.61653 * 201.27851 * 5 4 2 30 30 H 1.08998 * 110.88979 * 278.74922 * 6 5 4 31 31 H 1.08997 * 111.02200 * 155.07005 * 6 5 4 32 32 H 0.97004 * 119.99647 * 0.02562 * 11 9 7 33 33 H 0.97004 * 120.00128 * 359.97438 * 12 11 9 34 34 H 1.08999 * 109.47048 * 60.00202 * 15 13 12 35 35 H 1.08993 * 109.47202 * 299.99668 * 15 13 12 36 36 H 1.09004 * 109.47178 * 60.00383 * 16 15 13 37 37 H 1.08993 * 109.47411 * 300.00065 * 16 15 13 38 38 H 0.97000 * 120.00236 * 0.27947 * 20 19 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9005 1.0252 0.0000 4 8 2.0217 -0.6974 -1.1568 5 6 2.2334 -2.0702 -0.7629 6 6 2.8351 -1.9513 0.6631 7 6 2.0541 -0.7465 1.2421 8 1 1.2238 -1.0908 1.8587 9 6 2.9715 0.1411 2.0429 10 8 3.1720 1.2834 1.6881 11 7 3.5693 -0.3344 3.1534 12 7 4.4226 0.4907 3.8975 13 6 5.0208 0.0150 5.0077 14 8 4.8199 -1.1272 5.3627 15 6 5.9382 0.9027 5.8085 16 6 6.4804 0.1248 7.0093 17 6 7.3984 1.0123 7.8098 18 1 7.5769 2.0295 7.4939 19 6 8.0104 0.5257 8.9454 20 7 7.7888 -0.7114 9.3330 21 14 9.1477 1.6259 9.9380 22 1 9.6693 0.8728 11.1068 23 1 10.2818 2.0637 9.0850 24 1 8.3962 2.8160 10.4114 25 1 -0.3633 0.4982 0.8989 26 1 -0.3633 0.5294 -0.8808 27 1 -0.3633 -1.0275 -0.0180 28 1 1.2878 -2.6117 -0.7347 29 1 2.9346 -2.5597 -1.4388 30 1 3.9028 -1.7371 0.6179 31 1 2.6449 -2.8536 1.2443 32 1 3.4092 -1.2481 3.4369 33 1 4.5836 1.4041 3.6134 34 1 5.3854 1.7739 6.1599 35 1 6.7681 1.2278 5.1811 36 1 7.0332 -0.7466 6.6582 37 1 5.6504 -0.2000 7.6366 38 1 7.1981 -1.2827 8.8178 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000843659762.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:13:57 Heat of formation + Delta-G solvation = -133.351881 kcal Electronic energy + Delta-G solvation = -20335.270826 eV Core-core repulsion = 16984.214091 eV Total energy + Delta-G solvation = -3351.056735 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -41.92944 -40.84026 -39.51281 -36.65754 -35.92687 -34.06527 -33.19296 -32.29953 -31.57343 -28.01102 -27.06629 -24.37218 -23.51150 -22.75240 -22.29199 -21.00898 -19.29433 -19.02792 -18.70724 -17.60683 -17.31856 -16.88427 -16.62899 -16.15693 -15.74477 -15.61053 -15.49168 -15.04327 -14.52625 -14.32485 -14.24278 -13.77719 -13.63905 -13.21938 -12.91345 -12.71085 -12.55507 -12.46505 -12.12883 -12.06253 -12.01423 -11.90766 -11.87379 -11.49649 -11.12870 -10.72103 -10.65657 -10.54490 -9.59001 -8.68593 -6.40762 0.65947 1.08661 1.54737 1.56002 1.64966 1.83439 2.58926 2.76610 2.85647 3.17455 3.33545 3.39032 3.68475 3.83634 4.04026 4.13395 4.22744 4.27360 4.34494 4.39707 4.55293 4.63843 4.79352 4.83304 4.87537 4.96756 5.10933 5.25439 5.27418 5.35262 5.43976 5.58092 5.89731 5.92997 6.18515 6.33572 6.52816 6.69508 7.17705 7.44098 8.71867 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.053029 B = 0.002872 C = 0.002806 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 527.883851 B = 9748.408752 C = 9976.515298 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.165 4.165 2 C 0.079 3.921 3 H 0.090 0.910 4 O -0.393 6.393 5 C 0.043 3.957 6 C -0.147 4.147 7 C -0.125 4.125 8 H 0.148 0.852 9 C 0.523 3.477 10 O -0.570 6.570 11 N -0.517 5.517 12 N -0.523 5.523 13 C 0.520 3.480 14 O -0.575 6.575 15 C -0.104 4.104 16 C 0.028 3.972 17 C -0.620 4.620 18 H 0.067 0.933 19 C -0.043 4.043 20 N -0.940 5.940 21 Si 1.122 2.878 22 H -0.288 1.288 23 H -0.265 1.265 24 H -0.265 1.265 25 H 0.075 0.925 26 H 0.065 0.935 27 H 0.076 0.924 28 H 0.087 0.913 29 H 0.105 0.895 30 H 0.069 0.931 31 H 0.121 0.879 32 H 0.437 0.563 33 H 0.438 0.562 34 H 0.111 0.889 35 H 0.111 0.889 36 H -0.015 1.015 37 H -0.014 1.014 38 H 0.254 0.746 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.618 -0.523 -19.953 24.741 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.021 3.979 3 H 0.108 0.892 4 O -0.313 6.313 5 C -0.033 4.033 6 C -0.185 4.185 7 C -0.148 4.148 8 H 0.166 0.834 9 C 0.311 3.689 10 O -0.447 6.447 11 N -0.264 5.264 12 N -0.272 5.272 13 C 0.308 3.692 14 O -0.452 6.452 15 C -0.145 4.145 16 C -0.010 4.010 17 C -0.658 4.658 18 H 0.085 0.915 19 C -0.240 4.240 20 N -0.577 5.577 21 Si 0.942 3.058 22 H -0.214 1.214 23 H -0.190 1.190 24 H -0.190 1.190 25 H 0.094 0.906 26 H 0.084 0.916 27 H 0.095 0.905 28 H 0.105 0.895 29 H 0.124 0.876 30 H 0.087 0.913 31 H 0.140 0.860 32 H 0.280 0.720 33 H 0.282 0.718 34 H 0.129 0.871 35 H 0.129 0.871 36 H 0.004 0.996 37 H 0.004 0.996 38 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges -13.638 -0.386 -18.838 23.260 hybrid contribution -0.948 -0.411 -1.001 1.439 sum -14.587 -0.797 -19.839 24.637 Atomic orbital electron populations 1.22239 0.92993 1.03697 1.03259 1.22761 0.95411 0.97029 0.82686 0.89169 1.88937 1.86285 1.22401 1.33683 1.23818 1.01457 0.83526 0.94516 1.23312 0.99930 0.97485 0.97740 1.22816 0.98657 0.95816 0.97471 0.83410 1.21183 0.80400 0.88446 0.78904 1.90708 1.64196 1.20355 1.69466 1.45051 1.43340 1.14120 1.23896 1.45135 1.44018 1.14105 1.23964 1.21608 0.79961 0.88557 0.79038 1.90672 1.64005 1.20713 1.69859 1.21508 0.98082 0.98472 0.96471 1.18876 0.94565 0.94901 0.92657 1.22493 1.30242 1.00577 1.12486 0.91452 1.27574 0.99865 0.98524 0.98054 1.70900 1.37080 1.08144 1.41576 0.82888 0.74626 0.73468 0.74787 1.21394 1.19008 1.18986 0.90604 0.91638 0.90531 0.89488 0.87645 0.91266 0.86026 0.72033 0.71796 0.87060 0.87135 0.99630 0.99578 0.93710 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.99 9.31 71.98 0.67 -1.32 16 2 C 0.08 1.38 3.70 30.97 0.11 1.49 16 3 H 0.09 2.07 6.44 -2.38 -0.02 2.06 16 4 O -0.39 -7.63 11.20 -148.98 -1.67 -9.30 16 5 C 0.04 0.50 7.67 72.75 0.56 1.06 16 6 C -0.15 -1.71 6.69 31.98 0.21 -1.50 16 7 C -0.13 -1.81 3.06 -10.55 -0.03 -1.84 16 8 H 0.15 1.26 7.70 -2.39 -0.02 1.24 16 9 C 0.52 11.66 7.15 87.66 0.63 12.29 16 10 O -0.57 -16.57 15.10 -3.03 -0.05 -16.62 16 11 N -0.52 -12.26 6.22 -173.53 -1.08 -13.34 16 12 N -0.52 -14.60 6.26 -173.53 -1.09 -15.69 16 13 C 0.52 18.58 7.95 87.66 0.70 19.28 16 14 O -0.58 -24.88 15.82 -3.05 -0.05 -24.93 16 15 C -0.10 -3.95 5.64 29.85 0.17 -3.79 16 16 C 0.03 1.46 3.57 29.85 0.11 1.57 16 17 C -0.62 -34.67 9.11 25.60 0.23 -34.44 16 18 H 0.07 3.48 7.74 -2.91 -0.02 3.46 16 19 C -0.04 -2.50 5.46 84.65 0.46 -2.04 16 20 N -0.94 -59.78 13.65 21.45 0.29 -59.49 16 21 Si 1.12 49.48 29.90 68.60 2.05 51.53 16 22 H -0.29 -12.92 7.11 99.48 0.71 -12.21 16 23 H -0.27 -10.67 7.11 99.48 0.71 -9.97 16 24 H -0.26 -10.66 7.11 99.48 0.71 -9.95 16 25 H 0.08 0.81 8.14 -2.39 -0.02 0.79 16 26 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 27 H 0.08 0.67 8.13 -2.39 -0.02 0.65 16 28 H 0.09 0.64 8.13 -2.39 -0.02 0.62 16 29 H 0.11 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.07 1.05 7.86 -2.39 -0.02 1.03 16 31 H 0.12 0.76 8.14 -2.39 -0.02 0.74 16 32 H 0.44 9.37 8.00 -213.32 -1.71 7.66 16 33 H 0.44 10.90 8.00 -213.32 -1.71 9.20 16 34 H 0.11 3.73 8.14 -2.39 -0.02 3.71 16 35 H 0.11 3.72 8.14 -2.39 -0.02 3.70 16 36 H -0.01 -0.86 7.97 -2.39 -0.02 -0.87 16 37 H -0.01 -0.82 7.96 -2.39 -0.02 -0.84 16 38 H 0.25 16.63 7.22 -92.71 -0.67 15.96 16 Total: -1.00 -78.29 322.79 0.00 -78.29 By element: Atomic # 1 Polarization: 21.03 SS G_CDS: -2.23 Total: 18.80 kcal Atomic # 6 Polarization: -13.07 SS G_CDS: 3.82 Total: -9.25 kcal Atomic # 7 Polarization: -86.65 SS G_CDS: -1.87 Total: -88.52 kcal Atomic # 8 Polarization: -49.09 SS G_CDS: -1.76 Total: -50.85 kcal Atomic # 14 Polarization: 49.48 SS G_CDS: 2.05 Total: 51.53 kcal Total: -78.29 0.00 -78.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000843659762.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -55.064 kcal (2) G-P(sol) polarization free energy of solvation -78.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -133.354 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.002 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.288 kcal (6) G-S(sol) free energy of system = (1) + (5) -133.352 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds