Wall clock time and date at job start Mon Mar 30 2020 02:19:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50695 * 120.00236 * 2 1 4 4 H 1.09003 * 109.46921 * 0.02562 * 3 2 1 5 5 C 1.53010 * 109.46966 * 119.99664 * 3 2 1 6 6 O 1.42892 * 109.47551 * 239.99875 * 3 2 1 7 7 N 1.41605 * 114.00086 * 154.99842 * 6 3 2 8 8 C 1.34776 * 119.99500 * 180.02562 * 7 6 3 9 9 O 1.21582 * 120.00423 * 0.02562 * 8 7 6 10 10 N 1.34785 * 119.99453 * 180.02562 * 8 7 6 11 11 C 1.47019 * 125.64770 * 0.04572 * 10 8 7 12 12 C 1.54324 * 107.27118 * 181.02535 * 11 10 8 13 13 C 1.55155 * 102.94145 * 22.18930 * 12 11 10 14 14 O 1.42900 * 111.03660 * 82.59071 * 13 12 11 15 15 C 1.50702 * 111.00366 * 206.42519 * 13 12 11 16 16 H 1.08002 * 120.00299 * 353.65569 * 15 13 12 17 17 C 1.37884 * 119.99942 * 173.37128 * 15 13 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 13 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 13 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.47420 * 125.64611 * 180.02562 * 10 8 7 24 24 H 1.07998 * 120.00404 * 179.97438 * 1 2 3 25 25 H 1.08000 * 119.99867 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.99867 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47353 * 300.00356 * 5 3 2 28 28 H 1.09003 * 109.46587 * 60.00668 * 5 3 2 29 29 H 1.09000 * 109.47036 * 180.02562 * 5 3 2 30 30 H 0.96990 * 119.99804 * 0.02562 * 7 6 3 31 31 H 1.09004 * 109.88269 * 300.43820 * 11 10 8 32 32 H 1.08991 * 109.88590 * 61.60304 * 11 10 8 33 33 H 1.09000 * 110.71623 * 263.83158 * 12 11 10 34 34 H 1.09000 * 110.72442 * 140.55473 * 12 11 10 35 35 H 0.96704 * 113.99783 * 183.19809 * 14 13 12 36 36 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 37 37 H 1.09003 * 110.36919 * 37.07159 * 23 10 8 38 38 H 1.09002 * 110.37040 * 274.74684 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3552 2.1335 0.0005 5 6 2.9431 1.3860 1.2494 6 8 2.8851 1.3808 -1.1667 7 7 3.1896 2.7030 -1.5718 8 6 3.9570 2.9146 -2.6594 9 8 4.3873 1.9703 -3.2929 10 7 4.2473 4.1731 -3.0447 11 6 3.7958 5.4005 -2.3731 12 6 4.3486 6.5942 -3.1800 13 6 4.6069 5.9774 -4.5801 14 8 3.4063 5.9418 -5.3543 15 6 5.6936 6.7260 -5.3079 16 1 6.1037 7.6305 -4.8836 17 6 6.1684 6.2530 -6.5129 18 7 5.6690 5.1515 -7.0297 19 14 7.5207 7.1767 -7.4114 20 1 8.7295 7.2446 -6.5513 21 1 7.8501 6.4674 -8.6738 22 1 7.0574 8.5526 -7.7236 23 6 5.0705 4.5468 -4.2092 24 1 -0.5401 -0.9353 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 2.3164 1.3283 2.1393 28 1 3.6514 0.5575 1.2493 29 1 3.4878 2.3302 1.2496 30 1 2.8460 3.4563 -1.0666 31 1 2.7064 5.4358 -2.3584 32 1 4.1834 5.4301 -1.3549 33 1 5.2777 6.9587 -2.7418 34 1 3.6101 7.3936 -3.2410 35 1 3.5081 5.5200 -6.2185 36 1 6.0027 4.8189 -7.8776 37 1 4.8886 3.8623 -5.0377 38 1 6.1273 4.5481 -3.9420 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845617046.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:07 Heat of formation + Delta-G solvation = -44.325255 kcal Electronic energy + Delta-G solvation = -21156.543507 eV Core-core repulsion = 17809.347256 eV Total energy + Delta-G solvation = -3347.196251 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.56968 -38.19800 -36.98073 -34.41225 -34.23826 -32.21953 -31.59740 -30.13193 -29.41133 -27.70345 -25.00451 -23.47927 -22.65970 -20.58352 -19.71851 -19.38475 -18.28618 -17.24712 -16.98260 -15.79828 -15.29881 -15.10485 -14.79727 -14.49579 -14.29736 -13.99343 -13.50553 -13.18074 -13.05139 -12.80290 -12.46336 -12.16492 -11.96971 -11.66791 -11.53091 -11.16824 -11.05868 -10.99495 -10.81377 -10.62135 -10.49866 -10.19296 -9.88914 -9.59731 -9.35645 -8.69586 -8.64816 -8.37342 -7.72436 -6.26607 -4.37223 1.60240 2.24721 3.23423 3.29615 3.30884 3.76038 4.08230 4.28308 4.47363 4.58690 4.68671 4.91828 5.00146 5.08258 5.36670 5.42353 5.48919 5.60651 5.65579 5.72803 5.88069 5.96510 6.05353 6.24761 6.34487 6.49484 6.66915 6.86050 6.89618 7.08017 7.25414 7.32427 7.57520 7.75138 8.02286 8.44811 8.66763 9.15610 9.30698 9.39103 10.80119 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.039004 B = 0.003971 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.703605 B = 7048.986452 C = 7208.873536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.167 4.167 2 C -0.146 4.146 3 C 0.085 3.915 4 H 0.076 0.924 5 C -0.172 4.172 6 O -0.122 6.122 7 N -0.618 5.618 8 C 0.733 3.267 9 O -0.577 6.577 10 N -0.621 5.621 11 C 0.101 3.899 12 C -0.115 4.115 13 C 0.249 3.751 14 O -0.583 6.583 15 C -0.540 4.540 16 H 0.067 0.933 17 C 0.071 3.929 18 N -0.891 5.891 19 Si 0.904 3.096 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 C 0.117 3.883 24 H 0.107 0.893 25 H 0.099 0.901 26 H 0.120 0.880 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.062 0.938 30 H 0.399 0.601 31 H 0.056 0.944 32 H 0.051 0.949 33 H 0.079 0.921 34 H 0.075 0.925 35 H 0.382 0.618 36 H 0.271 0.729 37 H 0.087 0.913 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.593 -3.476 14.560 16.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.166 4.166 3 C 0.027 3.973 4 H 0.094 0.906 5 C -0.230 4.230 6 O -0.125 6.125 7 N -0.325 5.325 8 C 0.435 3.565 9 O -0.453 6.453 10 N -0.362 5.362 11 C -0.022 4.022 12 C -0.153 4.153 13 C 0.208 3.792 14 O -0.392 6.392 15 C -0.579 4.579 16 H 0.085 0.915 17 C -0.132 4.132 18 N -0.529 5.529 19 Si 0.732 3.268 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.004 4.004 24 H 0.125 0.875 25 H 0.117 0.883 26 H 0.138 0.862 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.081 0.919 30 H 0.238 0.762 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.097 0.903 34 H 0.093 0.907 35 H 0.232 0.768 36 H 0.082 0.918 37 H 0.106 0.894 38 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -7.435 -4.282 14.378 16.743 hybrid contribution 0.620 0.440 -0.410 0.863 sum -6.815 -3.842 13.968 16.010 Atomic orbital electron populations 1.23951 0.95484 1.02490 0.98514 1.22627 0.95557 0.97257 1.01120 1.21634 0.92419 0.96949 0.86334 0.90568 1.22303 1.00452 1.03309 0.96934 1.90625 1.71388 1.05276 1.45183 1.46343 1.57949 0.96931 1.31268 1.14973 0.78943 0.83141 0.79421 1.90910 1.57801 1.40561 1.56046 1.47848 1.54527 1.01804 1.32033 1.22001 0.98488 0.86135 0.95613 1.22586 1.00850 0.95693 0.96138 1.19629 0.83682 0.88930 0.86976 1.86092 1.35767 1.83483 1.33821 1.21410 1.20180 1.10584 1.05693 0.91499 1.25094 0.96516 0.94575 0.97060 1.69713 1.42644 1.20853 1.19671 0.86452 0.81710 0.79796 0.78879 1.20005 1.21080 1.20024 1.23226 0.92544 0.99650 0.84975 0.87458 0.88281 0.86202 0.91311 0.91298 0.91866 0.76173 0.92584 0.93035 0.90262 0.90674 0.76760 0.91849 0.89438 0.92214 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.37 14.32 29.02 0.42 -0.96 16 2 C -0.15 -1.46 9.15 -36.03 -0.33 -1.79 16 3 C 0.09 0.95 3.22 -27.88 -0.09 0.86 16 4 H 0.08 0.73 7.59 -51.93 -0.39 0.34 16 5 C -0.17 -1.61 9.55 37.16 0.35 -1.26 16 6 O -0.12 -2.01 10.73 -29.62 -0.32 -2.33 16 7 N -0.62 -10.43 6.33 27.64 0.18 -10.26 16 8 C 0.73 15.94 8.64 -86.91 -0.75 15.19 16 9 O -0.58 -15.24 17.01 -12.86 -0.22 -15.46 16 10 N -0.62 -13.03 3.33 -176.25 -0.59 -13.62 16 11 C 0.10 1.71 6.15 -3.07 -0.02 1.69 16 12 C -0.11 -2.19 6.13 -24.90 -0.15 -2.35 16 13 C 0.25 5.92 0.88 -89.63 -0.08 5.84 16 14 O -0.58 -14.66 13.18 -35.23 -0.46 -15.12 16 15 C -0.54 -13.83 8.27 -34.44 -0.28 -14.12 16 16 H 0.07 1.66 7.79 -52.49 -0.41 1.26 16 17 C 0.07 1.84 5.27 -17.82 -0.09 1.75 16 18 N -0.89 -23.72 10.67 55.43 0.59 -23.12 16 19 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 20 H -0.27 -6.08 7.11 56.52 0.40 -5.68 16 21 H -0.29 -6.38 7.11 56.52 0.40 -5.98 16 22 H -0.27 -6.10 7.11 56.52 0.40 -5.69 16 23 C 0.12 2.84 5.38 -2.54 -0.01 2.82 16 24 H 0.11 0.71 8.06 -52.49 -0.42 0.29 16 25 H 0.10 0.73 7.83 -52.49 -0.41 0.32 16 26 H 0.12 1.14 8.06 -52.49 -0.42 0.72 16 27 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 28 H 0.07 0.68 8.14 -51.93 -0.42 0.26 16 29 H 0.06 0.59 8.14 -51.93 -0.42 0.17 16 30 H 0.40 5.24 7.41 -40.82 -0.30 4.94 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.45 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.08 1.42 8.03 -51.93 -0.42 1.00 16 34 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 35 H 0.38 9.94 7.51 45.56 0.34 10.28 16 36 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.09 2.41 7.32 -51.93 -0.38 2.03 16 38 H 0.06 1.49 8.03 -51.93 -0.42 1.07 16 LS Contribution 323.84 15.07 4.88 4.88 Total: -1.00 -31.57 323.84 -6.91 -38.47 By element: Atomic # 1 Polarization: 18.60 SS G_CDS: -4.91 Total: 13.70 kcal Atomic # 6 Polarization: 8.74 SS G_CDS: -1.04 Total: 7.70 kcal Atomic # 7 Polarization: -47.18 SS G_CDS: 0.18 Total: -47.00 kcal Atomic # 8 Polarization: -31.91 SS G_CDS: -1.00 Total: -32.91 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.57 -6.91 -38.47 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845617046.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.851 kcal (2) G-P(sol) polarization free energy of solvation -31.566 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.416 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.909 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.475 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.325 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds