Wall clock time and date at job start Mon Mar 30 2020 02:19:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.30997 * 1 3 3 C 1.50695 * 120.00236 * 2 1 4 4 H 1.09003 * 109.46921 * 0.02562 * 3 2 1 5 5 C 1.53010 * 109.46966 * 119.99664 * 3 2 1 6 6 O 1.42892 * 109.47551 * 239.99875 * 3 2 1 7 7 N 1.41605 * 114.00086 * 154.99842 * 6 3 2 8 8 C 1.34776 * 119.99500 * 180.02562 * 7 6 3 9 9 O 1.21582 * 120.00423 * 0.02562 * 8 7 6 10 10 N 1.34785 * 119.99453 * 180.02562 * 8 7 6 11 11 C 1.47019 * 125.64770 * 0.04572 * 10 8 7 12 12 C 1.54324 * 107.27118 * 181.02535 * 11 10 8 13 13 C 1.55155 * 102.94145 * 22.18930 * 12 11 10 14 14 O 1.42900 * 111.03660 * 82.59071 * 13 12 11 15 15 C 1.50702 * 111.00366 * 206.42519 * 13 12 11 16 16 H 1.08002 * 120.00299 * 353.65569 * 15 13 12 17 17 C 1.37884 * 119.99942 * 173.37128 * 15 13 12 18 18 N 1.31514 * 119.99698 * 0.28408 * 17 15 13 19 19 Si 1.86794 * 119.99837 * 180.27476 * 17 15 13 20 20 H 1.48504 * 109.47196 * 60.00645 * 19 17 15 21 21 H 1.48504 * 109.46887 * 180.02562 * 19 17 15 22 22 H 1.48502 * 109.47679 * 300.00280 * 19 17 15 23 23 C 1.47420 * 125.64611 * 180.02562 * 10 8 7 24 24 H 1.07998 * 120.00404 * 179.97438 * 1 2 3 25 25 H 1.08000 * 119.99867 * 359.97438 * 1 2 3 26 26 H 1.08000 * 119.99867 * 180.02562 * 2 1 3 27 27 H 1.08999 * 109.47353 * 300.00356 * 5 3 2 28 28 H 1.09003 * 109.46587 * 60.00668 * 5 3 2 29 29 H 1.09000 * 109.47036 * 180.02562 * 5 3 2 30 30 H 0.96990 * 119.99804 * 0.02562 * 7 6 3 31 31 H 1.09004 * 109.88269 * 300.43820 * 11 10 8 32 32 H 1.08991 * 109.88590 * 61.60304 * 11 10 8 33 33 H 1.09000 * 110.71623 * 263.83158 * 12 11 10 34 34 H 1.09000 * 110.72442 * 140.55473 * 12 11 10 35 35 H 0.96704 * 113.99783 * 183.19809 * 14 13 12 36 36 H 0.97005 * 119.99651 * 179.97438 * 18 17 15 37 37 H 1.09003 * 110.36919 * 37.07159 * 23 10 8 38 38 H 1.09002 * 110.37040 * 274.74684 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3050 0.0000 4 1 1.3552 2.1335 0.0005 5 6 2.9431 1.3860 1.2494 6 8 2.8851 1.3808 -1.1667 7 7 3.1896 2.7030 -1.5718 8 6 3.9570 2.9146 -2.6594 9 8 4.3873 1.9703 -3.2929 10 7 4.2473 4.1731 -3.0447 11 6 3.7958 5.4005 -2.3731 12 6 4.3486 6.5942 -3.1800 13 6 4.6069 5.9774 -4.5801 14 8 3.4063 5.9418 -5.3543 15 6 5.6936 6.7260 -5.3079 16 1 6.1037 7.6305 -4.8836 17 6 6.1684 6.2530 -6.5129 18 7 5.6690 5.1515 -7.0297 19 14 7.5207 7.1767 -7.4114 20 1 8.7295 7.2446 -6.5513 21 1 7.8501 6.4674 -8.6738 22 1 7.0574 8.5526 -7.7236 23 6 5.0705 4.5468 -4.2092 24 1 -0.5401 -0.9353 -0.0004 25 1 -0.5400 0.9353 0.0004 26 1 1.8499 -0.9353 -0.0004 27 1 2.3164 1.3283 2.1393 28 1 3.6514 0.5575 1.2493 29 1 3.4878 2.3302 1.2496 30 1 2.8460 3.4563 -1.0666 31 1 2.7064 5.4358 -2.3584 32 1 4.1834 5.4301 -1.3549 33 1 5.2777 6.9587 -2.7418 34 1 3.6101 7.3936 -3.2410 35 1 3.5081 5.5200 -6.2185 36 1 6.0027 4.8189 -7.8776 37 1 4.8886 3.8623 -5.0377 38 1 6.1273 4.5481 -3.9420 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845617046.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:06 Heat of formation + Delta-G solvation = -67.096115 kcal Electronic energy + Delta-G solvation = -21157.530926 eV Core-core repulsion = 17809.347256 eV Total energy + Delta-G solvation = -3348.183670 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -41.19454 -39.48983 -38.58430 -36.06726 -35.42994 -34.20289 -33.01565 -31.39961 -30.55797 -29.44986 -26.88007 -24.50793 -24.08792 -21.69660 -21.47751 -20.65014 -19.59327 -19.03014 -18.56656 -17.08837 -17.03034 -16.72083 -16.22010 -16.01008 -15.63400 -15.07341 -14.86879 -14.64840 -14.50261 -14.39586 -13.78228 -13.51539 -13.29794 -13.15976 -12.83454 -12.78624 -12.52394 -12.31856 -12.25285 -12.10440 -12.06047 -11.92895 -11.39789 -11.16156 -10.63898 -10.57917 -10.32498 -10.07968 -9.37252 -8.21930 -6.39787 0.45749 1.32709 1.46686 1.46975 1.55136 2.07934 2.39838 2.64438 3.04334 3.54813 3.74045 3.80795 3.92123 4.08504 4.10738 4.19396 4.34774 4.40196 4.61187 4.73524 4.76648 4.78308 4.96825 5.09793 5.11679 5.16943 5.22818 5.37664 5.48680 5.57900 5.59703 5.73200 5.78670 6.05426 6.15604 6.67604 6.92150 7.29976 7.37398 7.54936 8.82764 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.039004 B = 0.003971 C = 0.003883 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 717.703605 B = 7048.986452 C = 7208.873536 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.174 4.174 3 C 0.077 3.923 4 H 0.097 0.903 5 C -0.168 4.168 6 O -0.152 6.152 7 N -0.596 5.596 8 C 0.728 3.272 9 O -0.636 6.636 10 N -0.624 5.624 11 C 0.100 3.900 12 C -0.109 4.109 13 C 0.232 3.768 14 O -0.587 6.587 15 C -0.557 4.557 16 H 0.072 0.928 17 C 0.026 3.974 18 N -0.916 5.916 19 Si 0.964 3.036 20 H -0.269 1.269 21 H -0.288 1.288 22 H -0.269 1.269 23 C 0.131 3.869 24 H 0.124 0.876 25 H 0.111 0.889 26 H 0.116 0.884 27 H 0.093 0.907 28 H 0.056 0.944 29 H 0.062 0.938 30 H 0.419 0.581 31 H 0.077 0.923 32 H 0.095 0.905 33 H 0.092 0.908 34 H 0.089 0.911 35 H 0.373 0.627 36 H 0.269 0.731 37 H 0.043 0.957 38 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.675 -2.238 16.777 19.019 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.184 4.184 2 C -0.194 4.194 3 C 0.020 3.980 4 H 0.114 0.886 5 C -0.225 4.225 6 O -0.156 6.156 7 N -0.303 5.303 8 C 0.430 3.570 9 O -0.516 6.516 10 N -0.364 5.364 11 C -0.021 4.021 12 C -0.146 4.146 13 C 0.191 3.809 14 O -0.394 6.394 15 C -0.595 4.595 16 H 0.090 0.910 17 C -0.176 4.176 18 N -0.555 5.555 19 Si 0.790 3.210 20 H -0.194 1.194 21 H -0.214 1.214 22 H -0.194 1.194 23 C 0.008 3.992 24 H 0.142 0.858 25 H 0.129 0.871 26 H 0.134 0.866 27 H 0.112 0.888 28 H 0.075 0.925 29 H 0.081 0.919 30 H 0.263 0.737 31 H 0.095 0.905 32 H 0.113 0.887 33 H 0.111 0.889 34 H 0.107 0.893 35 H 0.222 0.778 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -8.563 -2.994 16.678 18.986 hybrid contribution 0.852 0.009 -1.025 1.333 sum -7.711 -2.985 15.653 17.703 Atomic orbital electron populations 1.24225 0.94861 1.03905 0.95447 1.22638 0.96237 0.96633 1.03875 1.22018 0.92594 0.98332 0.85068 0.88553 1.22278 1.00382 1.02791 0.97079 1.90640 1.72689 1.04579 1.47670 1.45834 1.56270 0.98363 1.29784 1.15118 0.79222 0.82565 0.80112 1.90861 1.60126 1.42433 1.58221 1.47741 1.54140 1.03007 1.31478 1.22264 0.99897 0.83138 0.96821 1.22598 1.02202 0.96712 0.93109 1.19877 0.83099 0.88845 0.89031 1.86083 1.36589 1.83313 1.33461 1.21782 1.20732 1.10869 1.06087 0.90953 1.25851 0.98500 0.95219 0.97986 1.69849 1.43757 1.22076 1.19784 0.85510 0.79305 0.78679 0.77546 1.19434 1.21398 1.19355 1.22776 0.92222 0.99245 0.84993 0.85783 0.87102 0.86610 0.88781 0.92452 0.91883 0.73731 0.90453 0.88653 0.88936 0.89261 0.77804 0.92188 0.93799 0.93844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.02 14.32 67.78 0.97 -1.05 16 2 C -0.17 -3.18 9.15 25.65 0.23 -2.95 16 3 C 0.08 1.57 3.22 29.85 0.10 1.67 16 4 H 0.10 1.55 7.59 -2.39 -0.02 1.53 16 5 C -0.17 -2.78 9.55 71.99 0.69 -2.10 16 6 O -0.15 -4.91 10.73 -21.44 -0.23 -5.14 16 7 N -0.60 -19.26 6.33 -184.75 -1.17 -20.43 16 8 C 0.73 31.71 8.64 179.05 1.55 33.26 16 9 O -0.64 -34.80 17.01 13.38 0.23 -34.57 16 10 N -0.62 -25.84 3.33 -829.80 -2.76 -28.60 16 11 C 0.10 3.09 6.15 86.73 0.53 3.62 16 12 C -0.11 -3.88 6.13 31.78 0.19 -3.68 16 13 C 0.23 11.02 0.88 -10.15 -0.01 11.01 16 14 O -0.59 -29.75 13.18 -148.98 -1.96 -31.72 16 15 C -0.56 -28.45 8.27 25.60 0.21 -28.24 16 16 H 0.07 3.53 7.79 -2.91 -0.02 3.51 16 17 C 0.03 1.33 5.27 84.66 0.45 1.78 16 18 N -0.92 -50.31 10.67 21.45 0.23 -50.08 16 19 Si 0.96 41.53 29.54 68.60 2.03 43.56 16 20 H -0.27 -11.28 7.11 99.48 0.71 -10.57 16 21 H -0.29 -12.45 7.11 99.48 0.71 -11.74 16 22 H -0.27 -11.22 7.11 99.48 0.71 -10.51 16 23 C 0.13 6.49 5.38 86.85 0.47 6.96 16 24 H 0.12 1.28 8.06 -2.91 -0.02 1.25 16 25 H 0.11 1.25 7.83 -2.91 -0.02 1.23 16 26 H 0.12 2.15 8.06 -2.91 -0.02 2.12 16 27 H 0.09 1.08 8.14 -2.39 -0.02 1.06 16 28 H 0.06 1.08 8.14 -2.39 -0.02 1.06 16 29 H 0.06 1.03 8.14 -2.39 -0.02 1.01 16 30 H 0.42 9.75 7.41 -92.72 -0.69 9.06 16 31 H 0.08 2.09 8.14 -2.39 -0.02 2.07 16 32 H 0.10 2.17 8.14 -2.39 -0.02 2.15 16 33 H 0.09 3.04 8.03 -2.39 -0.02 3.02 16 34 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 35 H 0.37 20.09 7.51 -74.05 -0.56 19.53 16 36 H 0.27 14.28 8.31 -92.70 -0.77 13.51 16 37 H 0.04 2.54 7.32 -2.39 -0.02 2.52 16 38 H 0.04 2.24 8.03 -2.39 -0.02 2.22 16 Total: -1.00 -71.31 323.84 1.56 -69.75 By element: Atomic # 1 Polarization: 37.13 SS G_CDS: -0.18 Total: 36.95 kcal Atomic # 6 Polarization: 14.90 SS G_CDS: 5.38 Total: 20.28 kcal Atomic # 7 Polarization: -95.41 SS G_CDS: -3.70 Total: -99.11 kcal Atomic # 8 Polarization: -69.46 SS G_CDS: -1.97 Total: -71.43 kcal Atomic # 14 Polarization: 41.53 SS G_CDS: 2.03 Total: 43.56 kcal Total: -71.31 1.56 -69.75 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845617046.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.653 kcal (2) G-P(sol) polarization free energy of solvation -71.311 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.658 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.562 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.749 kcal (6) G-S(sol) free energy of system = (1) + (5) -67.096 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds