Wall clock time and date at job start Mon Mar 30 2020 02:19:10 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 120.00466 * 2 1 4 4 H 1.09007 * 109.46861 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.47486 * 119.99730 * 3 2 1 6 6 O 1.42903 * 109.47252 * 239.99940 * 3 2 1 7 7 N 1.41597 * 113.99699 * 154.99519 * 6 3 2 8 8 C 1.34780 * 119.99729 * 180.02562 * 7 6 3 9 9 O 1.21584 * 119.99986 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00256 * 180.02562 * 8 7 6 11 11 C 1.47290 * 125.79121 * 359.97438 * 10 8 7 12 12 C 1.54325 * 107.30599 * 178.92556 * 11 10 8 13 13 C 1.55154 * 102.94303 * 337.81911 * 12 11 10 14 14 O 1.42902 * 111.00280 * 277.42723 * 13 12 11 15 15 C 1.50693 * 111.03939 * 153.59058 * 13 12 11 16 16 H 1.08004 * 120.00401 * 6.33015 * 15 13 12 17 17 C 1.37876 * 120.00383 * 186.33190 * 15 13 12 18 18 N 1.31512 * 119.99646 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 120.00223 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47177 * 59.99714 * 19 17 15 21 21 H 1.48506 * 109.46953 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47102 * 299.99690 * 19 17 15 23 23 C 1.47425 * 125.65138 * 179.97438 * 10 8 7 24 24 H 1.07992 * 120.00275 * 180.02562 * 1 2 3 25 25 H 1.08005 * 119.99251 * 359.97438 * 1 2 3 26 26 H 1.08005 * 119.99963 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.47090 * 300.00579 * 5 3 2 28 28 H 1.08998 * 109.47167 * 60.00068 * 5 3 2 29 29 H 1.08997 * 109.47571 * 180.02562 * 5 3 2 30 30 H 0.96999 * 120.00767 * 0.02562 * 7 6 3 31 31 H 1.09004 * 109.85762 * 59.50172 * 11 10 8 32 32 H 1.08995 * 110.00297 * 298.43119 * 11 10 8 33 33 H 1.09002 * 110.72180 * 219.45147 * 12 11 10 34 34 H 1.08997 * 110.72163 * 96.18354 * 12 11 10 35 35 H 0.96703 * 114.00194 * 173.65090 * 14 13 12 36 36 H 0.97010 * 119.99834 * 180.02562 * 18 17 15 37 37 H 1.09002 * 110.36696 * 85.25946 * 23 10 8 38 38 H 1.08995 * 110.36608 * 323.04783 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3553 2.1336 -0.0005 5 6 2.9432 1.3861 1.2492 6 8 2.8852 1.3807 -1.1668 7 7 3.1897 2.7028 -1.5719 8 6 3.9570 2.9145 -2.6596 9 8 4.3874 1.9702 -3.2931 10 7 4.2474 4.1729 -3.0450 11 6 3.7957 5.4047 -2.3756 12 6 4.3944 6.5957 -3.1531 13 6 5.6100 5.9611 -3.8790 14 8 6.7435 5.8882 -3.0118 15 6 5.9444 6.7189 -5.1378 16 1 5.4271 7.6386 -5.3682 17 6 6.9109 6.2383 -5.9957 18 7 7.5412 5.1187 -5.7151 19 14 7.3260 7.1781 -7.5558 20 1 7.8050 8.5383 -7.2017 21 1 8.3900 6.4571 -8.2997 22 1 6.1133 7.2861 -8.4061 23 6 5.0714 4.5466 -4.2089 24 1 -0.5400 -0.9352 0.0004 25 1 -0.5399 0.9354 0.0004 26 1 1.8500 -0.9354 0.0004 27 1 2.3165 1.3284 2.1392 28 1 3.6515 0.5576 1.2493 29 1 3.4879 2.3302 1.2495 30 1 2.8461 3.4563 -1.0668 31 1 4.1515 5.4180 -1.3453 32 1 2.7073 5.4605 -2.3924 33 1 4.7199 7.3788 -2.4683 34 1 3.6759 6.9863 -3.8736 35 1 7.4965 5.4120 -3.3879 36 1 8.2214 4.7807 -6.3185 37 1 4.4620 4.5739 -5.1122 38 1 5.8969 3.8452 -4.3301 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000845617050.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:10 Heat of formation + Delta-G solvation = -44.161450 kcal Electronic energy + Delta-G solvation = -21156.819328 eV Core-core repulsion = 17809.630180 eV Total energy + Delta-G solvation = -3347.189148 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -39.56328 -38.19702 -36.98179 -34.41919 -34.22136 -32.21961 -31.59951 -30.13080 -29.41284 -27.69924 -25.00099 -23.47754 -22.66455 -20.59161 -19.71841 -19.39335 -18.28496 -17.24837 -16.96736 -15.78464 -15.35039 -15.11280 -14.71294 -14.49472 -14.36270 -13.99128 -13.49777 -13.18831 -13.04144 -12.81509 -12.45417 -12.12853 -11.99685 -11.66006 -11.50702 -11.17017 -11.06871 -10.99220 -10.82008 -10.62358 -10.48289 -10.19512 -9.89962 -9.60356 -9.36569 -8.69304 -8.64939 -8.36568 -7.73307 -6.26123 -4.36387 1.59352 2.23708 3.23795 3.29897 3.31214 3.75818 4.07055 4.28700 4.46739 4.59056 4.67534 4.92658 5.00567 5.07248 5.36836 5.42528 5.50200 5.60198 5.65960 5.72541 5.90870 5.96418 6.05061 6.23436 6.33163 6.49094 6.66499 6.85360 6.88778 7.07519 7.24540 7.31801 7.57044 7.75467 8.03656 8.44208 8.67296 9.15228 9.30887 9.39242 10.80841 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.039523 B = 0.003967 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.270764 B = 7056.165439 C = 7246.821648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.169 4.169 2 C -0.145 4.145 3 C 0.085 3.915 4 H 0.076 0.924 5 C -0.173 4.173 6 O -0.122 6.122 7 N -0.618 5.618 8 C 0.733 3.267 9 O -0.577 6.577 10 N -0.622 5.622 11 C 0.101 3.899 12 C -0.115 4.115 13 C 0.249 3.751 14 O -0.583 6.583 15 C -0.539 4.539 16 H 0.067 0.933 17 C 0.072 3.928 18 N -0.891 5.891 19 Si 0.904 3.096 20 H -0.275 1.275 21 H -0.285 1.285 22 H -0.275 1.275 23 C 0.116 3.884 24 H 0.107 0.893 25 H 0.099 0.901 26 H 0.120 0.880 27 H 0.068 0.932 28 H 0.068 0.932 29 H 0.063 0.937 30 H 0.399 0.601 31 H 0.056 0.944 32 H 0.052 0.948 33 H 0.075 0.925 34 H 0.079 0.921 35 H 0.382 0.618 36 H 0.271 0.729 37 H 0.060 0.940 38 H 0.087 0.913 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.710 -3.463 11.727 16.931 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C -0.165 4.165 3 C 0.027 3.973 4 H 0.094 0.906 5 C -0.231 4.231 6 O -0.125 6.125 7 N -0.325 5.325 8 C 0.436 3.564 9 O -0.453 6.453 10 N -0.363 5.363 11 C -0.022 4.022 12 C -0.153 4.153 13 C 0.208 3.792 14 O -0.391 6.391 15 C -0.578 4.578 16 H 0.085 0.915 17 C -0.132 4.132 18 N -0.529 5.529 19 Si 0.732 3.268 20 H -0.200 1.200 21 H -0.211 1.211 22 H -0.200 1.200 23 C -0.005 4.005 24 H 0.125 0.875 25 H 0.117 0.883 26 H 0.138 0.862 27 H 0.087 0.913 28 H 0.087 0.913 29 H 0.082 0.918 30 H 0.238 0.762 31 H 0.074 0.926 32 H 0.070 0.930 33 H 0.093 0.907 34 H 0.097 0.903 35 H 0.232 0.768 36 H 0.081 0.919 37 H 0.078 0.922 38 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -11.584 -4.237 11.503 16.866 hybrid contribution 0.223 0.420 -0.669 0.820 sum -11.361 -3.818 10.835 16.157 Atomic orbital electron populations 1.23942 0.95473 1.02452 0.98684 1.22639 0.95548 0.97297 1.00968 1.21637 0.92397 0.96877 0.86399 0.90617 1.22303 1.00452 1.03449 0.96863 1.90626 1.71424 1.05275 1.45157 1.46340 1.58045 0.96930 1.31172 1.14964 0.78940 0.83114 0.79432 1.90911 1.57586 1.40539 1.56282 1.47904 1.54560 1.01807 1.32010 1.22045 0.97395 0.86026 0.96751 1.22585 0.97975 0.95682 0.99033 1.19633 0.82909 0.88963 0.87669 1.86100 1.26573 1.80107 1.46332 1.21399 1.21900 1.09251 1.05228 0.91520 1.25087 0.95190 0.94630 0.98304 1.69711 1.25022 1.19946 1.38220 0.86454 0.78201 0.79842 0.82345 1.20035 1.21089 1.20008 1.23238 0.93236 0.99711 0.84296 0.87471 0.88316 0.86181 0.91319 0.91254 0.91771 0.76175 0.92563 0.93017 0.90660 0.90259 0.76835 0.91872 0.92201 0.89451 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -1.34 14.32 29.01 0.42 -0.92 16 2 C -0.15 -1.43 9.15 -36.03 -0.33 -1.76 16 3 C 0.09 0.95 3.22 -27.88 -0.09 0.86 16 4 H 0.08 0.71 7.59 -51.92 -0.39 0.32 16 5 C -0.17 -1.67 9.54 37.16 0.35 -1.32 16 6 O -0.12 -2.01 10.73 -29.62 -0.32 -2.33 16 7 N -0.62 -10.41 6.34 27.63 0.18 -10.23 16 8 C 0.73 15.91 8.64 -86.92 -0.75 15.16 16 9 O -0.58 -15.21 17.00 -12.86 -0.22 -15.43 16 10 N -0.62 -13.01 3.34 -176.02 -0.59 -13.60 16 11 C 0.10 1.71 6.17 -2.92 -0.02 1.69 16 12 C -0.11 -2.19 6.13 -24.90 -0.15 -2.34 16 13 C 0.25 5.92 0.87 -89.63 -0.08 5.85 16 14 O -0.58 -14.63 13.16 -35.23 -0.46 -15.09 16 15 C -0.54 -13.83 8.27 -34.44 -0.28 -14.11 16 16 H 0.07 1.66 7.79 -52.48 -0.41 1.25 16 17 C 0.07 1.85 5.29 -17.82 -0.09 1.76 16 18 N -0.89 -23.75 10.69 55.43 0.59 -23.16 16 19 Si 0.90 20.22 29.54 -169.99 -5.02 15.20 16 20 H -0.27 -6.11 7.11 56.52 0.40 -5.71 16 21 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 22 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 23 C 0.12 2.81 5.38 -2.53 -0.01 2.80 16 24 H 0.11 0.68 8.06 -52.49 -0.42 0.26 16 25 H 0.10 0.69 7.83 -52.48 -0.41 0.28 16 26 H 0.12 1.14 8.06 -52.48 -0.42 0.72 16 27 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 28 H 0.07 0.71 8.14 -51.93 -0.42 0.29 16 29 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 30 H 0.40 5.22 7.42 -40.82 -0.30 4.92 16 31 H 0.06 0.87 8.14 -51.93 -0.42 0.44 16 32 H 0.05 0.71 8.14 -51.93 -0.42 0.29 16 33 H 0.07 1.36 8.14 -51.93 -0.42 0.94 16 34 H 0.08 1.42 8.03 -51.93 -0.42 1.00 16 35 H 0.38 9.90 7.56 45.56 0.34 10.25 16 36 H 0.27 6.98 8.31 -40.82 -0.34 6.64 16 37 H 0.06 1.49 8.03 -51.93 -0.42 1.07 16 38 H 0.09 2.39 7.32 -51.93 -0.38 2.01 16 LS Contribution 323.95 15.07 4.88 4.88 Total: -1.00 -31.58 323.95 -6.90 -38.48 By element: Atomic # 1 Polarization: 18.51 SS G_CDS: -4.90 Total: 13.61 kcal Atomic # 6 Polarization: 8.70 SS G_CDS: -1.04 Total: 7.66 kcal Atomic # 7 Polarization: -47.16 SS G_CDS: 0.18 Total: -46.98 kcal Atomic # 8 Polarization: -31.85 SS G_CDS: -1.00 Total: -32.85 kcal Atomic # 14 Polarization: 20.22 SS G_CDS: -5.02 Total: 15.20 kcal Total LS contribution 4.88 Total: 4.88 kcal Total: -31.58 -6.90 -38.48 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845617050.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.680 kcal (2) G-P(sol) polarization free energy of solvation -31.577 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -37.258 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.904 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.161 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds