Wall clock time and date at job start Mon Mar 30 2020 02:19:09 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50698 * 120.00466 * 2 1 4 4 H 1.09007 * 109.46861 * 359.97438 * 3 2 1 5 5 C 1.52999 * 109.47486 * 119.99730 * 3 2 1 6 6 O 1.42903 * 109.47252 * 239.99940 * 3 2 1 7 7 N 1.41597 * 113.99699 * 154.99519 * 6 3 2 8 8 C 1.34780 * 119.99729 * 180.02562 * 7 6 3 9 9 O 1.21584 * 119.99986 * 0.02562 * 8 7 6 10 10 N 1.34774 * 120.00256 * 180.02562 * 8 7 6 11 11 C 1.47290 * 125.79121 * 359.97438 * 10 8 7 12 12 C 1.54325 * 107.30599 * 178.92556 * 11 10 8 13 13 C 1.55154 * 102.94303 * 337.81911 * 12 11 10 14 14 O 1.42902 * 111.00280 * 277.42723 * 13 12 11 15 15 C 1.50693 * 111.03939 * 153.59058 * 13 12 11 16 16 H 1.08004 * 120.00401 * 6.33015 * 15 13 12 17 17 C 1.37876 * 120.00383 * 186.33190 * 15 13 12 18 18 N 1.31512 * 119.99646 * 359.97438 * 17 15 13 19 19 Si 1.86803 * 120.00223 * 180.02562 * 17 15 13 20 20 H 1.48495 * 109.47177 * 59.99714 * 19 17 15 21 21 H 1.48506 * 109.46953 * 179.97438 * 19 17 15 22 22 H 1.48499 * 109.47102 * 299.99690 * 19 17 15 23 23 C 1.47425 * 125.65138 * 179.97438 * 10 8 7 24 24 H 1.07992 * 120.00275 * 180.02562 * 1 2 3 25 25 H 1.08005 * 119.99251 * 359.97438 * 1 2 3 26 26 H 1.08005 * 119.99963 * 179.97438 * 2 1 3 27 27 H 1.08998 * 109.47090 * 300.00579 * 5 3 2 28 28 H 1.08998 * 109.47167 * 60.00068 * 5 3 2 29 29 H 1.08997 * 109.47571 * 180.02562 * 5 3 2 30 30 H 0.96999 * 120.00767 * 0.02562 * 7 6 3 31 31 H 1.09004 * 109.85762 * 59.50172 * 11 10 8 32 32 H 1.08995 * 110.00297 * 298.43119 * 11 10 8 33 33 H 1.09002 * 110.72180 * 219.45147 * 12 11 10 34 34 H 1.08997 * 110.72163 * 96.18354 * 12 11 10 35 35 H 0.96703 * 114.00194 * 173.65090 * 14 13 12 36 36 H 0.97010 * 119.99834 * 180.02562 * 18 17 15 37 37 H 1.09002 * 110.36696 * 85.25946 * 23 10 8 38 38 H 1.08995 * 110.36608 * 323.04783 * 23 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0636 1.3050 0.0000 4 1 1.3553 2.1336 -0.0005 5 6 2.9432 1.3861 1.2492 6 8 2.8852 1.3807 -1.1668 7 7 3.1897 2.7028 -1.5719 8 6 3.9570 2.9145 -2.6596 9 8 4.3874 1.9702 -3.2931 10 7 4.2474 4.1729 -3.0450 11 6 3.7957 5.4047 -2.3756 12 6 4.3944 6.5957 -3.1531 13 6 5.6100 5.9611 -3.8790 14 8 6.7435 5.8882 -3.0118 15 6 5.9444 6.7189 -5.1378 16 1 5.4271 7.6386 -5.3682 17 6 6.9109 6.2383 -5.9957 18 7 7.5412 5.1187 -5.7151 19 14 7.3260 7.1781 -7.5558 20 1 7.8050 8.5383 -7.2017 21 1 8.3900 6.4571 -8.2997 22 1 6.1133 7.2861 -8.4061 23 6 5.0714 4.5466 -4.2089 24 1 -0.5400 -0.9352 0.0004 25 1 -0.5399 0.9354 0.0004 26 1 1.8500 -0.9354 0.0004 27 1 2.3165 1.3284 2.1392 28 1 3.6515 0.5576 1.2493 29 1 3.4879 2.3302 1.2495 30 1 2.8461 3.4563 -1.0668 31 1 4.1515 5.4180 -1.3453 32 1 2.7073 5.4605 -2.3924 33 1 4.7199 7.3788 -2.4683 34 1 3.6759 6.9863 -3.8736 35 1 7.4965 5.4120 -3.3879 36 1 8.2214 4.7807 -6.3185 37 1 4.4620 4.5739 -5.1122 38 1 5.8969 3.8452 -4.3301 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000845617050.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:19:09 Heat of formation + Delta-G solvation = -66.974950 kcal Electronic energy + Delta-G solvation = -21157.808595 eV Core-core repulsion = 17809.630180 eV Total energy + Delta-G solvation = -3348.178415 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -41.18418 -39.48721 -38.58338 -36.04828 -35.42840 -34.20489 -33.01263 -31.40307 -30.56262 -29.44488 -26.87618 -24.50946 -24.09064 -21.69685 -21.47658 -20.64855 -19.58566 -19.02585 -18.55621 -17.11697 -16.97666 -16.76009 -16.20452 -16.03388 -15.59029 -15.15421 -14.80736 -14.65642 -14.49554 -14.41139 -13.76948 -13.49684 -13.29796 -13.16742 -12.83184 -12.78609 -12.53180 -12.31394 -12.25533 -12.10610 -12.05595 -11.92919 -11.39883 -11.16995 -10.63965 -10.57601 -10.31274 -10.08356 -9.37635 -8.21693 -6.39225 0.45838 1.32901 1.46662 1.46952 1.55088 2.08135 2.39930 2.63670 3.04556 3.54724 3.74150 3.81265 3.91712 4.08125 4.10333 4.19550 4.34618 4.40418 4.61309 4.72679 4.76090 4.77908 4.97164 5.09642 5.11417 5.16371 5.22033 5.37075 5.48442 5.58449 5.59785 5.73279 5.78739 6.06287 6.16050 6.67924 6.91885 7.29872 7.37650 7.54964 8.83184 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.039523 B = 0.003967 C = 0.003863 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 708.270764 B = 7056.165439 C = 7246.821648 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.175 4.175 3 C 0.078 3.922 4 H 0.099 0.901 5 C -0.170 4.170 6 O -0.152 6.152 7 N -0.596 5.596 8 C 0.728 3.272 9 O -0.636 6.636 10 N -0.624 5.624 11 C 0.101 3.899 12 C -0.109 4.109 13 C 0.232 3.768 14 O -0.587 6.587 15 C -0.556 4.556 16 H 0.072 0.928 17 C 0.025 3.975 18 N -0.916 5.916 19 Si 0.964 3.036 20 H -0.269 1.269 21 H -0.288 1.288 22 H -0.269 1.269 23 C 0.130 3.870 24 H 0.124 0.876 25 H 0.112 0.888 26 H 0.115 0.885 27 H 0.094 0.906 28 H 0.055 0.945 29 H 0.059 0.941 30 H 0.419 0.581 31 H 0.077 0.923 32 H 0.096 0.904 33 H 0.089 0.911 34 H 0.092 0.908 35 H 0.373 0.627 36 H 0.269 0.731 37 H 0.043 0.957 38 H 0.043 0.957 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -14.054 -2.208 13.104 19.342 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.183 4.183 2 C -0.194 4.194 3 C 0.021 3.979 4 H 0.117 0.883 5 C -0.227 4.227 6 O -0.156 6.156 7 N -0.303 5.303 8 C 0.430 3.570 9 O -0.516 6.516 10 N -0.364 5.364 11 C -0.021 4.021 12 C -0.146 4.146 13 C 0.192 3.808 14 O -0.394 6.394 15 C -0.594 4.594 16 H 0.090 0.910 17 C -0.176 4.176 18 N -0.555 5.555 19 Si 0.790 3.210 20 H -0.194 1.194 21 H -0.214 1.214 22 H -0.194 1.194 23 C 0.007 3.993 24 H 0.142 0.858 25 H 0.131 0.869 26 H 0.133 0.867 27 H 0.113 0.887 28 H 0.074 0.926 29 H 0.078 0.922 30 H 0.263 0.737 31 H 0.096 0.904 32 H 0.114 0.886 33 H 0.107 0.893 34 H 0.111 0.889 35 H 0.221 0.779 36 H 0.078 0.922 37 H 0.062 0.938 38 H 0.062 0.938 Dipole moment (debyes) X Y Z Total from point charges -13.987 -2.931 12.955 19.289 hybrid contribution 0.854 -0.015 -1.015 1.327 sum -13.133 -2.947 11.939 17.992 Atomic orbital electron populations 1.24224 0.94758 1.03955 0.95328 1.22626 0.96266 0.96538 1.03986 1.22015 0.92519 0.98448 0.84931 0.88307 1.22286 1.00429 1.02645 0.97340 1.90642 1.72747 1.04584 1.47616 1.45833 1.56380 0.98363 1.29679 1.15109 0.79194 0.82538 0.80145 1.90863 1.59912 1.42414 1.58457 1.47796 1.54134 1.03016 1.31481 1.22306 0.99927 0.83008 0.96847 1.22596 0.95943 0.96658 0.99434 1.19881 0.83907 0.88934 0.88102 1.86091 1.26763 1.79902 1.46646 1.21775 1.21941 1.09552 1.06124 0.90979 1.25849 0.95284 0.95315 1.01122 1.69848 1.25410 1.21181 1.39041 0.85512 0.77885 0.78657 0.78993 1.19397 1.21408 1.19390 1.22784 0.92100 0.99201 0.85216 0.85787 0.86945 0.86744 0.88695 0.92585 0.92157 0.73733 0.90449 0.88592 0.89276 0.88921 0.77880 0.92217 0.93821 0.93790 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.88 14.32 67.78 0.97 -0.91 16 2 C -0.17 -3.13 9.15 25.65 0.23 -2.89 16 3 C 0.08 1.59 3.22 29.85 0.10 1.68 16 4 H 0.10 1.52 7.59 -2.38 -0.02 1.50 16 5 C -0.17 -2.97 9.54 71.98 0.69 -2.28 16 6 O -0.15 -4.91 10.73 -21.42 -0.23 -5.14 16 7 N -0.60 -19.22 6.34 -184.75 -1.17 -20.39 16 8 C 0.73 31.66 8.64 179.05 1.55 33.21 16 9 O -0.64 -34.75 17.00 13.37 0.23 -34.52 16 10 N -0.62 -25.80 3.34 -829.08 -2.77 -28.56 16 11 C 0.10 3.08 6.17 86.68 0.54 3.62 16 12 C -0.11 -3.88 6.13 31.78 0.19 -3.68 16 13 C 0.23 11.04 0.87 -10.15 -0.01 11.03 16 14 O -0.59 -29.76 13.16 -148.98 -1.96 -31.72 16 15 C -0.56 -28.46 8.27 25.60 0.21 -28.25 16 16 H 0.07 3.52 7.79 -2.91 -0.02 3.50 16 17 C 0.03 1.32 5.29 84.65 0.45 1.77 16 18 N -0.92 -50.42 10.69 21.45 0.23 -50.19 16 19 Si 0.96 41.63 29.54 68.60 2.03 43.65 16 20 H -0.27 -11.27 7.11 99.48 0.71 -10.57 16 21 H -0.29 -12.48 7.11 99.48 0.71 -11.78 16 22 H -0.27 -11.27 7.11 99.48 0.71 -10.56 16 23 C 0.13 6.45 5.38 86.85 0.47 6.91 16 24 H 0.12 1.18 8.06 -2.91 -0.02 1.16 16 25 H 0.11 1.15 7.83 -2.91 -0.02 1.12 16 26 H 0.11 2.12 8.06 -2.91 -0.02 2.09 16 27 H 0.09 1.15 8.14 -2.39 -0.02 1.13 16 28 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 30 H 0.42 9.71 7.42 -92.71 -0.69 9.02 16 31 H 0.08 2.08 8.14 -2.38 -0.02 2.06 16 32 H 0.10 2.16 8.14 -2.39 -0.02 2.14 16 33 H 0.09 2.94 8.14 -2.39 -0.02 2.92 16 34 H 0.09 3.04 8.03 -2.39 -0.02 3.02 16 35 H 0.37 20.06 7.56 -74.06 -0.56 19.50 16 36 H 0.27 14.30 8.31 -92.70 -0.77 13.53 16 37 H 0.04 2.25 8.03 -2.39 -0.02 2.23 16 38 H 0.04 2.54 7.32 -2.39 -0.02 2.52 16 Total: -1.00 -71.48 323.95 1.56 -69.92 By element: Atomic # 1 Polarization: 36.92 SS G_CDS: -0.18 Total: 36.74 kcal Atomic # 6 Polarization: 14.82 SS G_CDS: 5.38 Total: 20.20 kcal Atomic # 7 Polarization: -95.43 SS G_CDS: -3.71 Total: -99.14 kcal Atomic # 8 Polarization: -69.41 SS G_CDS: -1.96 Total: -71.37 kcal Atomic # 14 Polarization: 41.63 SS G_CDS: 2.03 Total: 43.65 kcal Total: -71.48 1.56 -69.92 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000845617050.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 2.945 kcal (2) G-P(sol) polarization free energy of solvation -71.479 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -68.534 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.559 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.920 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.975 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds