Wall clock time and date at job start Mon Mar 30 2020 01:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47041 * 2 1 4 4 N 1.46496 * 109.47190 * 120.00406 * 2 1 3 5 5 C 1.46500 * 120.00012 * 299.99794 * 4 2 1 6 6 C 1.50704 * 109.47105 * 270.00140 * 5 4 2 7 7 H 1.08001 * 119.99986 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99839 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00448 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99867 * 180.02562 * 8 6 5 11 11 H 1.48507 * 109.47237 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47445 * 119.99563 * 10 8 6 13 13 H 1.48500 * 109.47010 * 239.99738 * 10 8 6 14 14 C 1.34783 * 119.99991 * 120.00151 * 4 2 1 15 15 O 1.21284 * 119.99862 * 180.02562 * 14 4 2 16 16 C 1.50699 * 119.99845 * 359.97438 * 14 4 2 17 17 H 1.09002 * 109.39808 * 40.00345 * 16 14 4 18 18 C 1.53132 * 109.39900 * 280.18301 * 16 14 4 19 19 C 1.53478 * 108.36678 * 191.97610 * 18 16 14 20 20 O 1.45438 * 108.10717 * 61.73082 * 19 18 16 21 21 C 1.34211 * 117.18172 * 313.56059 * 20 19 18 22 22 O 1.21509 * 118.45928 * 196.79703 * 21 20 19 23 23 N 1.33729 * 123.07978 * 16.79146 * 21 20 19 24 24 H 1.09003 * 109.46902 * 299.99730 * 1 2 3 25 25 H 1.08996 * 109.47247 * 59.99265 * 1 2 3 26 26 H 1.09000 * 109.47313 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46902 * 240.00270 * 2 1 3 28 28 H 1.09003 * 109.47073 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.47530 * 299.99930 * 3 2 1 30 30 H 1.09003 * 109.47052 * 60.00362 * 3 2 1 31 31 H 1.08997 * 109.47071 * 29.99853 * 5 4 2 32 32 H 1.09005 * 109.47213 * 150.00252 * 5 4 2 33 33 H 0.96998 * 120.00649 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.68616 * 311.69941 * 18 16 14 35 35 H 1.08999 * 109.68622 * 72.25651 * 18 16 14 36 36 H 1.08996 * 109.74062 * 181.38179 * 19 18 16 37 37 H 1.09001 * 109.73710 * 302.03242 * 19 18 16 38 38 H 0.97001 * 118.51791 * 177.73590 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.6645 -0.1902 2.5267 6 6 2.7032 0.8017 2.9830 7 1 3.5432 1.0356 2.3457 8 6 2.5818 1.4098 4.2144 9 7 1.5592 1.1246 4.9907 10 14 3.8690 2.6398 4.7797 11 1 4.9099 2.7846 3.7303 12 1 3.2239 3.9552 5.0223 13 1 4.4969 2.1572 6.0358 14 6 2.7932 -1.7865 1.0723 15 8 3.1971 -2.3585 2.0626 16 6 3.1568 -2.3015 -0.2965 17 1 3.3706 -1.4597 -0.9550 18 6 1.9849 -3.1069 -0.8647 19 6 2.4757 -3.8651 -2.1056 20 8 3.5280 -4.7790 -1.6901 21 6 4.4803 -4.2900 -0.8806 22 8 5.5180 -4.9117 -0.7659 23 7 4.3409 -3.1506 -0.1946 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.6905 0.2973 2.4843 32 1 1.6239 -1.0228 3.2291 33 1 1.4735 1.5527 5.8569 34 1 1.6303 -3.8165 -0.1171 35 1 1.1760 -2.4315 -1.1432 36 1 1.6511 -4.4278 -2.5432 37 1 2.8683 -3.1588 -2.8371 38 1 5.0585 -2.8756 0.3972 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000858995065.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:13 Heat of formation + Delta-G solvation = -112.855398 kcal Electronic energy + Delta-G solvation = -21955.566245 eV Core-core repulsion = 18605.398304 eV Total energy + Delta-G solvation = -3350.167941 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -41.18187 -39.35292 -37.12448 -36.33460 -35.24547 -32.93000 -31.72152 -31.02261 -28.37742 -26.95163 -26.34198 -24.14967 -22.93025 -21.56279 -20.21564 -18.85796 -18.34434 -17.45264 -17.11143 -16.56751 -16.01615 -15.32584 -14.82314 -14.77375 -14.56660 -14.35053 -13.80314 -13.75492 -13.42657 -12.81444 -12.53920 -12.36573 -12.15055 -11.82512 -11.73346 -11.65323 -11.31794 -11.08890 -10.97528 -10.82746 -10.70608 -10.53994 -10.49266 -10.13877 -9.69051 -9.60656 -8.87446 -8.51341 -7.87141 -6.13001 -4.17004 2.56134 2.73267 3.03994 3.23919 3.32937 3.35137 3.39208 3.65283 4.25754 4.37187 4.39657 4.61231 4.71764 4.90671 4.98690 5.10280 5.20421 5.22205 5.35753 5.43054 5.67197 5.78156 5.85975 5.99127 6.09022 6.21689 6.42997 6.80520 6.81664 6.92076 7.31028 7.37504 7.60806 7.82757 8.11149 8.12830 8.20647 8.71202 8.89248 9.47772 10.95284 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.023065 B = 0.005708 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.682327 B = 4904.183542 C = 5556.661895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.164 4.164 2 C 0.128 3.872 3 C -0.159 4.159 4 N -0.584 5.584 5 C 0.245 3.755 6 C -0.523 4.523 7 H 0.059 0.941 8 C 0.061 3.939 9 N -0.894 5.894 10 Si 0.896 3.104 11 H -0.273 1.273 12 H -0.284 1.284 13 H -0.283 1.283 14 C 0.496 3.504 15 O -0.524 6.524 16 C 0.112 3.888 17 H 0.101 0.899 18 C -0.168 4.168 19 C 0.063 3.937 20 O -0.344 6.344 21 C 0.662 3.338 22 O -0.538 6.538 23 N -0.707 5.707 24 H 0.071 0.929 25 H 0.061 0.939 26 H 0.053 0.947 27 H 0.074 0.926 28 H 0.055 0.945 29 H 0.051 0.949 30 H 0.083 0.917 31 H 0.038 0.962 32 H 0.043 0.957 33 H 0.263 0.737 34 H 0.094 0.906 35 H 0.110 0.890 36 H 0.118 0.882 37 H 0.080 0.920 38 H 0.425 0.575 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.932 -2.118 -15.800 16.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.222 4.222 2 C 0.023 3.977 3 C -0.217 4.217 4 N -0.316 5.316 5 C 0.127 3.873 6 C -0.561 4.561 7 H 0.078 0.922 8 C -0.141 4.141 9 N -0.533 5.533 10 Si 0.723 3.277 11 H -0.198 1.198 12 H -0.210 1.210 13 H -0.209 1.209 14 C 0.280 3.720 15 O -0.400 6.400 16 C 0.003 3.997 17 H 0.119 0.881 18 C -0.206 4.206 19 C -0.011 4.011 20 O -0.256 6.256 21 C 0.415 3.585 22 O -0.423 6.423 23 N -0.374 5.374 24 H 0.090 0.910 25 H 0.080 0.920 26 H 0.072 0.928 27 H 0.092 0.908 28 H 0.074 0.926 29 H 0.070 0.930 30 H 0.102 0.898 31 H 0.055 0.945 32 H 0.061 0.939 33 H 0.073 0.927 34 H 0.113 0.887 35 H 0.129 0.871 36 H 0.136 0.864 37 H 0.098 0.902 38 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges -3.519 -2.996 -15.291 15.974 hybrid contribution 0.714 1.230 0.753 1.609 sum -2.804 -1.766 -14.538 14.911 Atomic orbital electron populations 1.22189 0.95166 1.01928 1.02891 1.21132 0.94459 0.94458 0.87603 1.22157 1.01472 0.95419 1.02637 1.48359 1.48500 1.25631 1.09087 1.19319 0.96138 0.95123 0.76751 1.21433 1.08955 1.23546 1.02211 0.92245 1.24923 0.95746 0.97099 0.96303 1.69927 1.29453 1.43197 1.10694 0.86482 0.81565 0.80752 0.78864 1.19804 1.20980 1.20899 1.20161 0.80452 0.81677 0.89688 1.90743 1.52834 1.57755 1.38693 1.21207 0.86672 0.94140 0.97712 0.88133 1.22572 0.97924 1.01236 0.98838 1.23488 0.89309 0.92607 0.95715 1.86698 1.36296 1.40351 1.62258 1.17737 0.82636 0.80151 0.78015 1.91028 1.23928 1.59076 1.68265 1.45136 1.21388 1.23099 1.47809 0.91009 0.91989 0.92794 0.90821 0.92629 0.93025 0.89808 0.94458 0.93947 0.92721 0.88705 0.87126 0.86353 0.90163 0.73522 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.92 9.17 37.16 0.34 -1.58 16 2 C 0.13 1.70 2.67 -67.93 -0.18 1.52 16 3 C -0.16 -2.24 8.47 37.16 0.31 -1.93 16 4 N -0.58 -10.64 2.39 -167.47 -0.40 -11.03 16 5 C 0.25 5.81 4.60 -5.19 -0.02 5.79 16 6 C -0.52 -13.64 7.83 -34.44 -0.27 -13.91 16 7 H 0.06 1.55 7.63 -52.49 -0.40 1.15 16 8 C 0.06 1.67 5.46 -17.82 -0.10 1.57 16 9 N -0.89 -25.41 13.29 55.43 0.74 -24.67 16 10 Si 0.90 21.04 29.54 -169.99 -5.02 16.02 16 11 H -0.27 -6.33 7.11 56.52 0.40 -5.93 16 12 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 13 H -0.28 -6.75 7.11 56.52 0.40 -6.35 16 14 C 0.50 9.09 6.83 -10.98 -0.08 9.01 16 15 O -0.52 -12.25 15.98 5.55 0.09 -12.16 16 16 C 0.11 1.45 2.68 -69.25 -0.19 1.26 16 17 H 0.10 1.05 6.62 -51.93 -0.34 0.71 16 18 C -0.17 -1.63 5.33 -26.42 -0.14 -1.77 16 19 C 0.06 0.52 7.20 37.41 0.27 0.79 16 20 O -0.34 -4.69 10.50 -39.28 -0.41 -5.10 16 21 C 0.66 10.69 8.55 53.59 0.46 11.14 16 22 O -0.54 -10.66 17.95 -19.40 -0.35 -11.01 16 23 N -0.71 -10.50 4.85 -60.48 -0.29 -10.80 16 24 H 0.07 1.02 6.66 -51.93 -0.35 0.68 16 25 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 26 H 0.05 0.58 8.05 -51.93 -0.42 0.16 16 27 H 0.07 0.73 4.64 -51.93 -0.24 0.49 16 28 H 0.05 0.83 8.14 -51.93 -0.42 0.41 16 29 H 0.05 0.56 8.14 -51.93 -0.42 0.14 16 30 H 0.08 1.45 6.92 -51.93 -0.36 1.09 16 31 H 0.04 0.89 6.43 -51.93 -0.33 0.56 16 32 H 0.04 1.17 7.42 -51.93 -0.39 0.79 16 33 H 0.26 7.11 8.31 -40.82 -0.34 6.77 16 34 H 0.09 1.09 8.09 -51.93 -0.42 0.67 16 35 H 0.11 0.78 6.89 -51.93 -0.36 0.42 16 36 H 0.12 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.08 0.50 8.14 -51.93 -0.42 0.08 16 38 H 0.43 6.69 8.52 -40.82 -0.35 6.34 16 LS Contribution 311.49 15.07 4.69 4.69 Total: -1.00 -34.01 311.49 -5.75 -39.76 By element: Atomic # 1 Polarization: 7.60 SS G_CDS: -5.20 Total: 2.40 kcal Atomic # 6 Polarization: 11.49 SS G_CDS: 0.41 Total: 11.90 kcal Atomic # 7 Polarization: -46.55 SS G_CDS: 0.04 Total: -46.50 kcal Atomic # 8 Polarization: -27.60 SS G_CDS: -0.67 Total: -28.27 kcal Atomic # 14 Polarization: 21.04 SS G_CDS: -5.02 Total: 16.02 kcal Total LS contribution 4.69 Total: 4.69 kcal Total: -34.01 -5.75 -39.76 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858995065.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -73.098 kcal (2) G-P(sol) polarization free energy of solvation -34.010 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -107.108 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.747 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.757 kcal (6) G-S(sol) free energy of system = (1) + (5) -112.855 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds