Wall clock time and date at job start Mon Mar 30 2020 01:27:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47041 * 2 1 4 4 N 1.46496 * 109.47190 * 120.00406 * 2 1 3 5 5 C 1.46500 * 120.00012 * 299.99794 * 4 2 1 6 6 C 1.50704 * 109.47105 * 270.00140 * 5 4 2 7 7 H 1.08001 * 119.99986 * 359.97438 * 6 5 4 8 8 C 1.37875 * 119.99839 * 180.02562 * 6 5 4 9 9 N 1.31514 * 120.00448 * 359.97438 * 8 6 5 10 10 Si 1.86799 * 119.99867 * 180.02562 * 8 6 5 11 11 H 1.48507 * 109.47237 * 359.97438 * 10 8 6 12 12 H 1.48498 * 109.47445 * 119.99563 * 10 8 6 13 13 H 1.48500 * 109.47010 * 239.99738 * 10 8 6 14 14 C 1.34783 * 119.99991 * 120.00151 * 4 2 1 15 15 O 1.21284 * 119.99862 * 180.02562 * 14 4 2 16 16 C 1.50699 * 119.99845 * 359.97438 * 14 4 2 17 17 H 1.09002 * 109.39808 * 40.00345 * 16 14 4 18 18 C 1.53132 * 109.39900 * 280.18301 * 16 14 4 19 19 C 1.53478 * 108.36678 * 191.97610 * 18 16 14 20 20 O 1.45438 * 108.10717 * 61.73082 * 19 18 16 21 21 C 1.34211 * 117.18172 * 313.56059 * 20 19 18 22 22 O 1.21509 * 118.45928 * 196.79703 * 21 20 19 23 23 N 1.33729 * 123.07978 * 16.79146 * 21 20 19 24 24 H 1.09003 * 109.46902 * 299.99730 * 1 2 3 25 25 H 1.08996 * 109.47247 * 59.99265 * 1 2 3 26 26 H 1.09000 * 109.47313 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.46902 * 240.00270 * 2 1 3 28 28 H 1.09003 * 109.47073 * 180.02562 * 3 2 1 29 29 H 1.08995 * 109.47530 * 299.99930 * 3 2 1 30 30 H 1.09003 * 109.47052 * 60.00362 * 3 2 1 31 31 H 1.08997 * 109.47071 * 29.99853 * 5 4 2 32 32 H 1.09005 * 109.47213 * 150.00252 * 5 4 2 33 33 H 0.96998 * 120.00649 * 180.02562 * 9 8 6 34 34 H 1.09002 * 109.68616 * 311.69941 * 18 16 14 35 35 H 1.08999 * 109.68622 * 72.25651 * 18 16 14 36 36 H 1.08996 * 109.74062 * 181.38179 * 19 18 16 37 37 H 1.09001 * 109.73710 * 302.03242 * 19 18 16 38 38 H 0.97001 * 118.51791 * 177.73590 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6907 1.1961 5 6 1.6645 -0.1902 2.5267 6 6 2.7032 0.8017 2.9830 7 1 3.5432 1.0356 2.3457 8 6 2.5818 1.4098 4.2144 9 7 1.5592 1.1246 4.9907 10 14 3.8690 2.6398 4.7797 11 1 4.9099 2.7846 3.7303 12 1 3.2239 3.9552 5.0223 13 1 4.4969 2.1572 6.0358 14 6 2.7932 -1.7865 1.0723 15 8 3.1971 -2.3585 2.0626 16 6 3.1568 -2.3015 -0.2965 17 1 3.3706 -1.4597 -0.9550 18 6 1.9849 -3.1069 -0.8647 19 6 2.4757 -3.8651 -2.1056 20 8 3.5280 -4.7790 -1.6901 21 6 4.4803 -4.2900 -0.8806 22 8 5.5180 -4.9117 -0.7659 23 7 4.3409 -3.1506 -0.1946 24 1 -0.3633 0.5138 0.8900 25 1 -0.3633 0.5139 -0.8899 26 1 -0.3634 -1.0277 -0.0005 27 1 1.8933 -0.5138 -0.8900 28 1 3.1300 1.4425 -0.0005 29 1 1.6767 1.9564 -0.8899 30 1 1.6767 1.9563 0.8900 31 1 0.6905 0.2973 2.4843 32 1 1.6239 -1.0228 3.2291 33 1 1.4735 1.5527 5.8569 34 1 1.6303 -3.8165 -0.1171 35 1 1.1760 -2.4315 -1.1432 36 1 1.6511 -4.4278 -2.5432 37 1 2.8683 -3.1588 -2.8371 38 1 5.0585 -2.8756 0.3972 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000858995065.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:13 Heat of formation + Delta-G solvation = -139.191315 kcal Electronic energy + Delta-G solvation = -21956.708256 eV Core-core repulsion = 18605.398304 eV Total energy + Delta-G solvation = -3351.309952 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -42.32215 -40.74449 -38.30134 -37.72779 -36.45756 -34.90190 -32.73501 -32.43290 -29.93471 -28.05529 -27.66364 -25.23485 -24.71077 -22.80783 -21.15472 -20.22022 -19.40005 -18.68710 -18.56669 -18.39035 -17.16849 -16.87903 -16.29187 -16.11044 -15.72589 -15.52742 -15.05410 -14.85505 -14.78112 -14.22310 -13.94524 -13.54232 -13.36192 -13.20211 -13.03964 -12.78367 -12.76596 -12.68429 -12.52069 -12.20132 -12.09062 -11.80842 -11.65427 -11.63246 -11.50014 -10.95988 -10.62015 -10.22996 -9.48310 -8.20815 -6.31813 1.34994 1.37684 1.41996 1.48428 1.50470 1.76199 2.18227 2.38953 2.51223 3.10164 3.29613 3.43599 3.71954 3.83405 4.00878 4.22745 4.27693 4.31723 4.43393 4.64477 4.79677 4.89538 4.92540 4.96630 5.04787 5.10315 5.16498 5.25112 5.49625 5.56811 5.61945 5.66074 5.84679 6.09504 6.51238 6.68900 6.78668 6.92482 7.26016 7.41536 8.86760 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.023065 B = 0.005708 C = 0.005038 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1213.682327 B = 4904.183542 C = 5556.661895 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.160 4.160 2 C 0.119 3.881 3 C -0.157 4.157 4 N -0.584 5.584 5 C 0.263 3.737 6 C -0.524 4.524 7 H 0.057 0.943 8 C 0.007 3.993 9 N -0.930 5.930 10 Si 0.957 3.043 11 H -0.266 1.266 12 H -0.272 1.272 13 H -0.288 1.288 14 C 0.488 3.512 15 O -0.588 6.588 16 C 0.121 3.879 17 H 0.142 0.858 18 C -0.164 4.164 19 C 0.060 3.940 20 O -0.355 6.355 21 C 0.666 3.334 22 O -0.586 6.586 23 N -0.707 5.707 24 H 0.035 0.965 25 H 0.101 0.899 26 H 0.065 0.935 27 H 0.124 0.876 28 H 0.044 0.956 29 H 0.093 0.907 30 H 0.042 0.958 31 H 0.032 0.968 32 H -0.009 1.009 33 H 0.264 0.736 34 H 0.072 0.928 35 H 0.150 0.850 36 H 0.156 0.844 37 H 0.114 0.886 38 H 0.417 0.583 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -4.651 -1.161 -19.401 19.984 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.218 4.218 2 C 0.017 3.983 3 C -0.215 4.215 4 N -0.315 5.315 5 C 0.142 3.858 6 C -0.563 4.563 7 H 0.075 0.925 8 C -0.191 4.191 9 N -0.571 5.571 10 Si 0.783 3.217 11 H -0.190 1.190 12 H -0.197 1.197 13 H -0.215 1.215 14 C 0.275 3.725 15 O -0.469 6.469 16 C 0.013 3.987 17 H 0.159 0.841 18 C -0.202 4.202 19 C -0.013 4.013 20 O -0.267 6.267 21 C 0.420 3.580 22 O -0.475 6.475 23 N -0.372 5.372 24 H 0.054 0.946 25 H 0.120 0.880 26 H 0.084 0.916 27 H 0.142 0.858 28 H 0.063 0.937 29 H 0.112 0.888 30 H 0.061 0.939 31 H 0.050 0.950 32 H 0.009 0.991 33 H 0.073 0.927 34 H 0.091 0.909 35 H 0.168 0.832 36 H 0.174 0.826 37 H 0.132 0.868 38 H 0.255 0.745 Dipole moment (debyes) X Y Z Total from point charges -4.289 -2.003 -18.963 19.545 hybrid contribution 0.835 0.947 1.834 2.227 sum -3.454 -1.056 -17.129 17.505 Atomic orbital electron populations 1.22177 0.93679 1.02847 1.03075 1.21620 0.95721 0.94069 0.86854 1.22127 1.00744 0.95939 1.02679 1.48338 1.48450 1.25962 1.08727 1.18695 0.95468 0.92612 0.79056 1.21703 1.09022 1.23398 1.02161 0.92517 1.25751 0.97642 0.99077 0.96662 1.70043 1.31272 1.44607 1.11132 0.85516 0.79264 0.78885 0.78054 1.18999 1.19719 1.21459 1.21156 0.79104 0.80838 0.91395 1.90714 1.55082 1.59594 1.41501 1.21412 0.87335 0.95562 0.94373 0.84058 1.22682 0.97329 1.01305 0.98902 1.24036 0.88985 0.93044 0.95208 1.86679 1.36738 1.41811 1.61445 1.17747 0.82566 0.79626 0.78081 1.90983 1.26322 1.60311 1.69904 1.45197 1.21705 1.23071 1.47253 0.94569 0.88017 0.91560 0.85818 0.93730 0.88825 0.93902 0.95027 0.99054 0.92682 0.90941 0.83226 0.82623 0.86777 0.74469 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.21 9.17 71.98 0.66 -2.55 16 2 C 0.12 2.77 2.67 44.99 0.12 2.89 16 3 C -0.16 -4.02 8.47 71.98 0.61 -3.41 16 4 N -0.58 -21.02 2.39 -802.12 -1.91 -22.93 16 5 C 0.26 12.99 4.60 85.63 0.39 13.38 16 6 C -0.52 -28.17 7.83 25.60 0.20 -27.97 16 7 H 0.06 3.01 7.63 -2.91 -0.02 2.99 16 8 C 0.01 0.40 5.46 84.65 0.46 0.86 16 9 N -0.93 -54.80 13.29 21.45 0.28 -54.51 16 10 Si 0.96 43.88 29.54 68.60 2.03 45.91 16 11 H -0.27 -11.73 7.11 99.48 0.71 -11.02 16 12 H -0.27 -11.87 7.11 99.48 0.71 -11.16 16 13 H -0.29 -13.40 7.11 99.48 0.71 -12.69 16 14 C 0.49 17.74 6.83 87.66 0.60 18.33 16 15 O -0.59 -28.75 15.98 -3.04 -0.05 -28.80 16 16 C 0.12 2.80 2.68 44.37 0.12 2.91 16 17 H 0.14 2.18 6.62 -2.39 -0.02 2.16 16 18 C -0.16 -2.50 5.33 30.80 0.16 -2.33 16 19 C 0.06 0.68 7.20 72.14 0.52 1.20 16 20 O -0.36 -8.75 10.50 -51.17 -0.54 -9.29 16 21 C 0.67 20.90 8.55 129.95 1.11 22.01 16 22 O -0.59 -23.54 17.95 19.93 0.36 -23.18 16 23 N -0.71 -20.30 4.85 -577.05 -2.80 -23.09 16 24 H 0.04 0.99 6.66 -2.39 -0.02 0.98 16 25 H 0.10 1.27 8.14 -2.39 -0.02 1.25 16 26 H 0.07 1.17 8.05 -2.39 -0.02 1.15 16 27 H 0.12 1.66 4.64 -2.39 -0.01 1.65 16 28 H 0.04 1.22 8.14 -2.39 -0.02 1.20 16 29 H 0.09 1.61 8.14 -2.39 -0.02 1.59 16 30 H 0.04 1.45 6.92 -2.39 -0.02 1.44 16 31 H 0.03 1.59 6.43 -2.39 -0.02 1.57 16 32 H -0.01 -0.51 7.42 -2.38 -0.02 -0.53 16 33 H 0.26 14.72 8.31 -92.71 -0.77 13.95 16 34 H 0.07 1.50 8.09 -2.39 -0.02 1.48 16 35 H 0.15 1.12 6.89 -2.39 -0.02 1.11 16 36 H 0.16 0.70 8.14 -2.39 -0.02 0.69 16 37 H 0.11 0.63 8.14 -2.39 -0.02 0.62 16 38 H 0.42 13.31 8.52 -92.71 -0.79 12.52 16 Total: -1.00 -82.26 311.49 2.63 -79.63 By element: Atomic # 1 Polarization: 10.64 SS G_CDS: 0.29 Total: 10.94 kcal Atomic # 6 Polarization: 20.37 SS G_CDS: 4.96 Total: 25.33 kcal Atomic # 7 Polarization: -96.11 SS G_CDS: -4.43 Total: -100.54 kcal Atomic # 8 Polarization: -61.04 SS G_CDS: -0.23 Total: -61.27 kcal Atomic # 14 Polarization: 43.88 SS G_CDS: 2.03 Total: 45.91 kcal Total: -82.26 2.63 -79.63 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000858995065.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -59.559 kcal (2) G-P(sol) polarization free energy of solvation -82.258 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -141.817 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.632 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.191 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds