Wall clock time and date at job start Mon Mar 30 2020 02:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.49871 * 2 1 4 4 C 1.53193 * 109.49710 * 239.93807 * 2 1 3 5 5 N 1.46934 * 108.77570 * 294.68625 * 4 2 1 6 6 C 1.34782 * 120.62818 * 126.11589 * 5 4 2 7 7 O 1.21582 * 120.00113 * 354.77061 * 6 5 4 8 8 N 1.34773 * 119.99426 * 174.76757 * 6 5 4 9 9 C 1.46508 * 119.99710 * 184.97875 * 8 6 5 10 10 C 1.50701 * 109.46975 * 180.02562 * 9 8 6 11 11 H 1.07996 * 120.00160 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99766 * 180.02562 * 10 9 8 13 13 N 1.31519 * 119.99930 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 119.99845 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47184 * 90.00430 * 14 12 10 16 16 H 1.48501 * 109.47082 * 210.00397 * 14 12 10 17 17 H 1.48502 * 109.47480 * 330.00035 * 14 12 10 18 18 C 1.46919 * 118.73827 * 306.39328 * 5 4 2 19 19 C 1.53188 * 108.77731 * 53.60486 * 18 5 4 20 20 C 1.53040 * 109.31623 * 305.36605 * 19 18 5 21 21 H 1.09000 * 109.44646 * 301.35132 * 20 19 18 22 22 C 1.50696 * 109.46032 * 181.38469 * 20 19 18 23 23 O 1.20824 * 119.99880 * 239.92973 * 22 20 19 24 24 O 1.34224 * 120.00168 * 59.93473 * 22 20 19 25 25 H 1.08996 * 109.47319 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46886 * 300.06276 * 1 2 3 27 27 H 1.09000 * 109.46581 * 60.06229 * 1 2 3 28 28 H 1.08995 * 109.59025 * 174.90099 * 4 2 1 29 29 H 1.09000 * 109.58936 * 54.47156 * 4 2 1 30 30 H 0.97000 * 120.00147 * 4.98383 * 8 6 5 31 31 H 1.09005 * 109.46760 * 300.00431 * 9 8 6 32 32 H 1.08997 * 109.46744 * 60.00166 * 9 8 6 33 33 H 0.96996 * 119.99985 * 179.97438 * 13 12 10 34 34 H 1.09004 * 109.58882 * 173.39530 * 18 5 4 35 35 H 1.09008 * 109.58624 * 293.81700 * 18 5 4 36 36 H 1.09000 * 109.49516 * 185.41243 * 19 18 5 37 37 H 1.09005 * 109.52365 * 65.33633 * 19 18 5 38 38 H 0.96695 * 116.99973 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 1.6515 -2.1378 -1.1703 6 6 0.9695 -2.7198 -2.1767 7 8 0.5882 -2.0521 -3.1186 8 7 0.7102 -4.0418 -2.1389 9 6 0.0658 -4.6948 -3.2812 10 6 -0.1106 -6.1622 -2.9871 11 1 0.2235 -6.5678 -2.0435 12 6 -0.6985 -6.9870 -3.9226 13 7 -1.1048 -6.4932 -5.0718 14 14 -0.9164 -8.8061 -3.5583 15 1 -2.2310 -9.0258 -2.9035 16 1 -0.8610 -9.5752 -4.8274 17 1 0.1694 -9.2636 -2.6545 18 6 2.0138 -2.9041 0.0297 19 6 1.5029 -2.1562 1.2652 20 6 2.0408 -0.7236 1.2481 21 1 3.1305 -0.7452 1.2349 22 6 1.5679 0.0050 2.4796 23 8 0.8920 1.0005 2.3703 24 8 1.8977 -0.4520 3.6978 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5148 0.8894 27 1 -0.3632 0.5129 -0.8906 28 1 3.1275 -0.6460 -1.2983 29 1 1.6008 -0.2724 -2.1390 30 1 0.9501 -4.5609 -1.3554 31 1 -0.9091 -4.2400 -3.4571 32 1 0.6884 -4.5737 -4.1676 33 1 -1.5180 -7.0735 -5.7301 34 1 1.5552 -3.8919 -0.0151 35 1 3.0978 -3.0045 0.0857 36 1 1.8480 -2.6637 2.1661 37 1 0.4131 -2.1359 1.2539 38 1 1.5714 0.0491 4.4577 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861456175.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:23 Heat of formation + Delta-G solvation = -122.881017 kcal Electronic energy + Delta-G solvation = -21360.527665 eV Core-core repulsion = 18009.924981 eV Total energy + Delta-G solvation = -3350.602684 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.06759 -39.68167 -37.50563 -36.32914 -34.27425 -33.37267 -32.21826 -31.69105 -27.56155 -27.45778 -25.67221 -23.15194 -22.73544 -22.06967 -19.90628 -18.74358 -18.27989 -18.18973 -16.76367 -16.09385 -15.78583 -15.67055 -15.36633 -14.68884 -14.56655 -14.07470 -13.70765 -13.54818 -13.25139 -13.09755 -12.86586 -12.12273 -12.07810 -11.91477 -11.69906 -11.63385 -11.54910 -11.10992 -10.94951 -10.87930 -10.72039 -10.65250 -10.37459 -10.26807 -9.37568 -9.32896 -8.72392 -8.41558 -7.72690 -6.14584 -4.21240 1.95994 2.76919 3.17450 3.25137 3.31649 3.34029 3.89659 4.30267 4.33026 4.41187 4.72095 4.72995 4.93989 5.09793 5.13463 5.21553 5.25363 5.42111 5.51155 5.54859 5.69238 5.77832 5.87967 5.97525 6.08366 6.12550 6.28349 6.49556 6.76829 7.12968 7.51932 7.54399 7.58576 7.65776 7.86279 8.02919 8.76327 8.90821 9.32750 9.48376 10.95686 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.031684 B = 0.004059 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.517683 B = 6896.479293 C = 7396.060870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.090 4.090 3 H 0.087 0.913 4 C 0.136 3.864 5 N -0.638 5.638 6 C 0.698 3.302 7 O -0.596 6.596 8 N -0.730 5.730 9 C 0.266 3.734 10 C -0.542 4.542 11 H 0.062 0.938 12 C 0.064 3.936 13 N -0.885 5.885 14 Si 0.904 3.096 15 H -0.279 1.279 16 H -0.285 1.285 17 H -0.273 1.273 18 C 0.116 3.884 19 C -0.129 4.129 20 C -0.073 4.073 21 H 0.110 0.890 22 C 0.483 3.517 23 O -0.509 6.509 24 O -0.517 6.517 25 H 0.057 0.943 26 H 0.070 0.930 27 H 0.058 0.942 28 H 0.062 0.938 29 H 0.100 0.900 30 H 0.385 0.615 31 H 0.025 0.975 32 H 0.024 0.976 33 H 0.266 0.734 34 H 0.087 0.913 35 H 0.069 0.931 36 H 0.086 0.914 37 H 0.078 0.922 38 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.477 10.191 16.781 21.385 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.109 4.109 3 H 0.105 0.895 4 C 0.012 3.988 5 N -0.378 5.378 6 C 0.399 3.601 7 O -0.475 6.475 8 N -0.384 5.384 9 C 0.145 3.855 10 C -0.580 4.580 11 H 0.080 0.920 12 C -0.140 4.140 13 N -0.523 5.523 14 Si 0.731 3.269 15 H -0.205 1.205 16 H -0.210 1.210 17 H -0.198 1.198 18 C -0.009 4.009 19 C -0.168 4.168 20 C -0.092 4.092 21 H 0.128 0.872 22 C 0.325 3.675 23 O -0.396 6.396 24 O -0.329 6.329 25 H 0.076 0.924 26 H 0.089 0.911 27 H 0.077 0.923 28 H 0.080 0.920 29 H 0.118 0.882 30 H 0.220 0.780 31 H 0.043 0.957 32 H 0.042 0.958 33 H 0.075 0.925 34 H 0.106 0.894 35 H 0.088 0.912 36 H 0.105 0.895 37 H 0.097 0.903 38 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 8.046 10.624 15.456 20.408 hybrid contribution -0.246 -0.905 1.126 1.465 sum 7.801 9.719 16.581 20.743 Atomic orbital electron populations 1.22005 0.93847 1.02421 1.02864 1.21430 0.97932 0.99159 0.92418 0.89501 1.21410 0.98681 0.80465 0.98214 1.47291 1.60824 1.11108 1.18532 1.16042 0.78840 0.82959 0.82231 1.90861 1.57989 1.63178 1.35450 1.45887 1.64358 1.05950 1.22179 1.18986 0.92752 0.91007 0.82752 1.21212 1.41331 0.92712 1.02755 0.92033 1.24939 0.95054 0.99217 0.94763 1.69980 1.39578 1.35998 1.06699 0.86422 0.78561 0.84153 0.77793 1.20493 1.21019 1.19775 1.21532 1.00163 0.95282 0.83881 1.22008 1.02474 0.92876 0.99435 1.21100 1.02583 0.96143 0.89379 0.87216 1.23598 0.76535 0.82697 0.84664 1.90684 1.35937 1.25951 1.87054 1.84548 1.73040 1.58362 1.16953 0.92448 0.91147 0.92299 0.91983 0.88168 0.78016 0.95697 0.95812 0.92465 0.89437 0.91249 0.89501 0.90291 0.73381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.05 8.40 37.16 0.31 -1.73 16 2 C -0.09 -0.99 2.36 -90.50 -0.21 -1.21 16 3 H 0.09 0.89 8.07 -51.93 -0.42 0.47 16 4 C 0.14 1.74 5.84 -3.71 -0.02 1.72 16 5 N -0.64 -9.49 2.41 -178.50 -0.43 -9.92 16 6 C 0.70 14.37 8.29 -86.92 -0.72 13.65 16 7 O -0.60 -14.81 15.77 5.29 0.08 -14.73 16 8 N -0.73 -15.60 5.46 -66.41 -0.36 -15.96 16 9 C 0.27 7.12 5.43 -5.19 -0.03 7.10 16 10 C -0.54 -14.67 9.28 -34.44 -0.32 -14.99 16 11 H 0.06 1.55 7.60 -52.49 -0.40 1.15 16 12 C 0.06 1.77 5.46 -17.82 -0.10 1.67 16 13 N -0.89 -26.13 13.29 55.43 0.74 -25.40 16 14 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 15 H -0.28 -6.34 7.11 56.52 0.40 -5.93 16 16 H -0.28 -6.52 7.11 56.52 0.40 -6.12 16 17 H -0.27 -6.07 7.11 56.52 0.40 -5.66 16 18 C 0.12 1.27 6.39 -3.72 -0.02 1.24 16 19 C -0.13 -1.21 4.95 -26.61 -0.13 -1.34 16 20 C -0.07 -0.67 2.37 -91.73 -0.22 -0.88 16 21 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 22 C 0.48 4.69 7.34 36.00 0.26 4.95 16 23 O -0.51 -6.40 14.51 -18.75 -0.27 -6.67 16 24 O -0.52 -3.72 13.30 -39.24 -0.52 -4.24 16 25 H 0.06 0.84 5.97 -51.93 -0.31 0.53 16 26 H 0.07 0.95 5.65 -51.93 -0.29 0.66 16 27 H 0.06 0.83 8.14 -51.93 -0.42 0.40 16 28 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 29 H 0.10 1.52 6.99 -51.93 -0.36 1.15 16 30 H 0.39 7.04 5.81 -40.82 -0.24 6.80 16 31 H 0.03 0.74 8.14 -51.93 -0.42 0.32 16 32 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 33 H 0.27 7.35 8.31 -40.82 -0.34 7.01 16 34 H 0.09 0.99 5.65 -51.93 -0.29 0.69 16 35 H 0.07 0.63 8.14 -51.92 -0.42 0.20 16 36 H 0.09 0.65 8.08 -51.93 -0.42 0.23 16 37 H 0.08 0.86 6.33 -51.93 -0.33 0.53 16 38 H 0.41 1.34 9.10 45.56 0.41 1.75 16 LS Contribution 308.11 15.07 4.64 4.64 Total: -1.00 -34.63 308.11 -6.66 -41.29 By element: Atomic # 1 Polarization: 9.39 SS G_CDS: -4.32 Total: 5.07 kcal Atomic # 6 Polarization: 11.37 SS G_CDS: -1.20 Total: 10.17 kcal Atomic # 7 Polarization: -51.22 SS G_CDS: -0.06 Total: -51.28 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.71 Total: -25.64 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.63 -6.66 -41.29 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861456175.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.588 kcal (2) G-P(sol) polarization free energy of solvation -34.631 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.219 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.662 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.293 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.881 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds