Wall clock time and date at job start Mon Mar 30 2020 02:16:23 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 H 1.08997 * 109.49871 * 2 1 4 4 C 1.53193 * 109.49710 * 239.93807 * 2 1 3 5 5 N 1.46934 * 108.77570 * 294.68625 * 4 2 1 6 6 C 1.34782 * 120.62818 * 126.11589 * 5 4 2 7 7 O 1.21582 * 120.00113 * 354.77061 * 6 5 4 8 8 N 1.34773 * 119.99426 * 174.76757 * 6 5 4 9 9 C 1.46508 * 119.99710 * 184.97875 * 8 6 5 10 10 C 1.50701 * 109.46975 * 180.02562 * 9 8 6 11 11 H 1.07996 * 120.00160 * 0.02562 * 10 9 8 12 12 C 1.37879 * 119.99766 * 180.02562 * 10 9 8 13 13 N 1.31519 * 119.99930 * 0.02562 * 12 10 9 14 14 Si 1.86795 * 119.99845 * 179.97438 * 12 10 9 15 15 H 1.48499 * 109.47184 * 90.00430 * 14 12 10 16 16 H 1.48501 * 109.47082 * 210.00397 * 14 12 10 17 17 H 1.48502 * 109.47480 * 330.00035 * 14 12 10 18 18 C 1.46919 * 118.73827 * 306.39328 * 5 4 2 19 19 C 1.53188 * 108.77731 * 53.60486 * 18 5 4 20 20 C 1.53040 * 109.31623 * 305.36605 * 19 18 5 21 21 H 1.09000 * 109.44646 * 301.35132 * 20 19 18 22 22 C 1.50696 * 109.46032 * 181.38469 * 20 19 18 23 23 O 1.20824 * 119.99880 * 239.92973 * 22 20 19 24 24 O 1.34224 * 120.00168 * 59.93473 * 22 20 19 25 25 H 1.08996 * 109.47319 * 180.02562 * 1 2 3 26 26 H 1.08997 * 109.46886 * 300.06276 * 1 2 3 27 27 H 1.09000 * 109.46581 * 60.06229 * 1 2 3 28 28 H 1.08995 * 109.59025 * 174.90099 * 4 2 1 29 29 H 1.09000 * 109.58936 * 54.47156 * 4 2 1 30 30 H 0.97000 * 120.00147 * 4.98383 * 8 6 5 31 31 H 1.09005 * 109.46760 * 300.00431 * 9 8 6 32 32 H 1.08997 * 109.46744 * 60.00166 * 9 8 6 33 33 H 0.96996 * 119.99985 * 179.97438 * 13 12 10 34 34 H 1.09004 * 109.58882 * 173.39530 * 18 5 4 35 35 H 1.09008 * 109.58624 * 293.81700 * 18 5 4 36 36 H 1.09000 * 109.49516 * 185.41243 * 19 18 5 37 37 H 1.09005 * 109.52365 * 65.33633 * 19 18 5 38 38 H 0.96695 * 116.99973 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0413 -0.7234 -1.2498 5 7 1.6515 -2.1378 -1.1703 6 6 0.9695 -2.7198 -2.1767 7 8 0.5882 -2.0521 -3.1186 8 7 0.7102 -4.0418 -2.1389 9 6 0.0658 -4.6948 -3.2812 10 6 -0.1106 -6.1622 -2.9871 11 1 0.2235 -6.5678 -2.0435 12 6 -0.6985 -6.9870 -3.9226 13 7 -1.1048 -6.4932 -5.0718 14 14 -0.9164 -8.8061 -3.5583 15 1 -2.2310 -9.0258 -2.9035 16 1 -0.8610 -9.5752 -4.8274 17 1 0.1694 -9.2636 -2.6545 18 6 2.0138 -2.9041 0.0297 19 6 1.5029 -2.1562 1.2652 20 6 2.0408 -0.7236 1.2481 21 1 3.1305 -0.7452 1.2349 22 6 1.5679 0.0050 2.4796 23 8 0.8920 1.0005 2.3703 24 8 1.8977 -0.4520 3.6978 25 1 -0.3634 -1.0276 0.0005 26 1 -0.3633 0.5148 0.8894 27 1 -0.3632 0.5129 -0.8906 28 1 3.1275 -0.6460 -1.2983 29 1 1.6008 -0.2724 -2.1390 30 1 0.9501 -4.5609 -1.3554 31 1 -0.9091 -4.2400 -3.4571 32 1 0.6884 -4.5737 -4.1676 33 1 -1.5180 -7.0735 -5.7301 34 1 1.5552 -3.8919 -0.0151 35 1 3.0978 -3.0045 0.0857 36 1 1.8480 -2.6637 2.1661 37 1 0.4131 -2.1359 1.2539 38 1 1.5714 0.0491 4.4577 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861456175.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:23 Heat of formation + Delta-G solvation = -148.754218 kcal Electronic energy + Delta-G solvation = -21361.649612 eV Core-core repulsion = 18009.924981 eV Total energy + Delta-G solvation = -3351.724631 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -41.97757 -40.93248 -38.71134 -37.06847 -36.18548 -34.81865 -33.92413 -32.73226 -29.41941 -28.45661 -27.02253 -24.59338 -24.03063 -23.09381 -21.32700 -20.11925 -19.36802 -18.97407 -18.10097 -17.49232 -17.20282 -16.74046 -16.63981 -16.37356 -15.73265 -15.26856 -15.01261 -14.74517 -14.46968 -14.36860 -14.04097 -13.86658 -13.69245 -12.97268 -12.93179 -12.82289 -12.69531 -12.64752 -12.42728 -12.17429 -12.03477 -11.61996 -11.56983 -11.44771 -11.30175 -11.01355 -10.78475 -10.00538 -9.34747 -8.26559 -6.43181 1.23836 1.44907 1.47834 1.58714 1.80794 2.12348 2.28703 2.40575 3.08590 3.21237 3.48949 3.65571 3.96084 3.96661 4.18522 4.35554 4.39414 4.57180 4.61883 4.72407 4.72868 4.85252 4.89749 5.05509 5.09362 5.13410 5.16653 5.29043 5.35454 5.50273 5.62430 5.71881 5.76865 5.87276 6.14485 6.68709 7.05573 7.22273 7.27490 7.74335 8.85941 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.031684 B = 0.004059 C = 0.003785 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 883.517683 B = 6896.479293 C = 7396.060870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.082 4.082 3 H 0.100 0.900 4 C 0.133 3.867 5 N -0.626 5.626 6 C 0.693 3.307 7 O -0.648 6.648 8 N -0.724 5.724 9 C 0.286 3.714 10 C -0.553 4.553 11 H 0.084 0.916 12 C 0.004 3.996 13 N -0.932 5.932 14 Si 0.986 3.014 15 H -0.272 1.272 16 H -0.285 1.285 17 H -0.253 1.253 18 C 0.108 3.892 19 C -0.121 4.121 20 C -0.070 4.070 21 H 0.145 0.855 22 C 0.490 3.510 23 O -0.544 6.544 24 O -0.508 6.508 25 H 0.038 0.962 26 H 0.069 0.931 27 H 0.038 0.962 28 H 0.098 0.902 29 H 0.068 0.932 30 H 0.403 0.597 31 H -0.019 1.019 32 H -0.015 1.015 33 H 0.268 0.732 34 H 0.084 0.916 35 H 0.105 0.895 36 H 0.118 0.882 37 H 0.058 0.942 38 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.525 8.905 19.884 24.196 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.102 4.102 3 H 0.118 0.882 4 C 0.010 3.990 5 N -0.364 5.364 6 C 0.394 3.606 7 O -0.531 6.531 8 N -0.380 5.380 9 C 0.162 3.838 10 C -0.591 4.591 11 H 0.102 0.898 12 C -0.196 4.196 13 N -0.571 5.571 14 Si 0.809 3.191 15 H -0.197 1.197 16 H -0.210 1.210 17 H -0.177 1.177 18 C -0.014 4.014 19 C -0.160 4.160 20 C -0.089 4.089 21 H 0.162 0.838 22 C 0.334 3.666 23 O -0.434 6.434 24 O -0.322 6.322 25 H 0.058 0.942 26 H 0.088 0.912 27 H 0.058 0.942 28 H 0.116 0.884 29 H 0.087 0.913 30 H 0.241 0.759 31 H -0.001 1.001 32 H 0.003 0.997 33 H 0.077 0.923 34 H 0.102 0.898 35 H 0.123 0.877 36 H 0.136 0.864 37 H 0.076 0.924 38 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 10.148 9.354 18.675 23.222 hybrid contribution -0.862 -0.402 0.231 0.978 sum 9.287 8.952 18.906 22.887 Atomic orbital electron populations 1.21941 0.96039 1.00854 1.01827 1.21330 0.95926 1.00042 0.92861 0.88181 1.21595 1.00507 0.78975 0.97906 1.47296 1.58795 1.12113 1.18170 1.16243 0.78980 0.82418 0.82933 1.90822 1.60051 1.64169 1.38074 1.45461 1.64464 1.06599 1.21478 1.18390 0.90165 0.91774 0.83441 1.21589 1.41280 0.92540 1.03709 0.89772 1.26070 0.94300 1.04927 0.94263 1.70151 1.40562 1.38234 1.08108 0.85141 0.79156 0.77000 0.77806 1.19736 1.21031 1.17657 1.21903 1.02362 0.94709 0.82436 1.21948 1.01244 0.93116 0.99649 1.21083 1.04457 0.95277 0.88048 0.83767 1.23556 0.75652 0.81985 0.85435 1.90688 1.37551 1.27606 1.87599 1.84491 1.72567 1.58279 1.16838 0.94247 0.91205 0.94248 0.88387 0.91348 0.75930 1.00080 0.99702 0.92281 0.89810 0.87656 0.86409 0.92369 0.71228 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.04 8.40 71.98 0.60 -3.44 16 2 C -0.08 -1.69 2.36 -10.71 -0.03 -1.71 16 3 H 0.10 1.86 8.07 -2.39 -0.02 1.84 16 4 C 0.13 3.24 5.84 86.36 0.50 3.75 16 5 N -0.63 -18.04 2.41 -836.90 -2.02 -20.06 16 6 C 0.69 29.38 8.29 179.05 1.49 30.86 16 7 O -0.65 -34.20 15.77 -3.97 -0.06 -34.27 16 8 N -0.72 -31.65 5.46 -482.28 -2.63 -34.28 16 9 C 0.29 16.05 5.43 85.63 0.47 16.51 16 10 C -0.55 -30.20 9.28 25.60 0.24 -29.96 16 11 H 0.08 4.11 7.60 -2.91 -0.02 4.09 16 12 C 0.00 0.22 5.46 84.65 0.46 0.68 16 13 N -0.93 -56.67 13.29 21.45 0.28 -56.39 16 14 Si 0.99 42.13 29.54 68.60 2.03 44.15 16 15 H -0.27 -11.26 7.11 99.48 0.71 -10.56 16 16 H -0.28 -12.09 7.11 99.48 0.71 -11.38 16 17 H -0.25 -9.93 7.11 99.48 0.71 -9.23 16 18 C 0.11 2.03 6.39 86.36 0.55 2.58 16 19 C -0.12 -1.85 4.95 30.67 0.15 -1.70 16 20 C -0.07 -1.02 2.37 -11.51 -0.03 -1.05 16 21 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 22 C 0.49 8.01 7.34 71.23 0.52 8.54 16 23 O -0.54 -12.72 14.51 21.97 0.32 -12.40 16 24 O -0.51 -5.32 13.30 -51.36 -0.68 -6.01 16 25 H 0.04 1.18 5.97 -2.39 -0.01 1.17 16 26 H 0.07 1.90 5.65 -2.39 -0.01 1.89 16 27 H 0.04 1.17 8.14 -2.39 -0.02 1.16 16 28 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 29 H 0.07 2.14 6.99 -2.39 -0.02 2.13 16 30 H 0.40 14.43 5.81 -92.71 -0.54 13.89 16 31 H -0.02 -1.20 8.14 -2.38 -0.02 -1.22 16 32 H -0.01 -0.94 8.14 -2.39 -0.02 -0.96 16 33 H 0.27 15.21 8.31 -92.71 -0.77 14.44 16 34 H 0.08 1.66 5.65 -2.38 -0.01 1.65 16 35 H 0.11 1.35 8.14 -2.38 -0.02 1.33 16 36 H 0.12 1.17 8.08 -2.39 -0.02 1.15 16 37 H 0.06 1.16 6.33 -2.38 -0.02 1.15 16 38 H 0.43 1.30 9.10 -74.06 -0.67 0.63 16 Total: -1.00 -80.14 308.11 2.05 -78.09 By element: Atomic # 1 Polarization: 16.22 SS G_CDS: -0.11 Total: 16.11 kcal Atomic # 6 Polarization: 20.12 SS G_CDS: 4.93 Total: 25.06 kcal Atomic # 7 Polarization: -106.36 SS G_CDS: -4.37 Total: -110.73 kcal Atomic # 8 Polarization: -52.25 SS G_CDS: -0.43 Total: -52.68 kcal Atomic # 14 Polarization: 42.13 SS G_CDS: 2.03 Total: 44.15 kcal Total: -80.14 2.05 -78.09 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861456175.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.666 kcal (2) G-P(sol) polarization free energy of solvation -80.142 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.808 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.054 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.088 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.754 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds