Wall clock time and date at job start Mon Mar 30 2020 02:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.49877 * 2 1 4 4 C 1.53193 * 109.50015 * 120.06472 * 2 1 3 5 5 N 1.46927 * 108.77543 * 65.31494 * 4 2 1 6 6 C 1.34772 * 120.63078 * 233.58782 * 5 4 2 7 7 O 1.21586 * 120.00413 * 5.22569 * 6 5 4 8 8 N 1.34782 * 119.99993 * 185.49754 * 6 5 4 9 9 C 1.46502 * 120.00146 * 174.74002 * 8 6 5 10 10 C 1.50701 * 109.47181 * 180.02562 * 9 8 6 11 11 H 1.08000 * 119.99727 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99882 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00306 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99847 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47241 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47000 * 119.99859 * 14 12 10 17 17 H 1.48499 * 109.47308 * 239.99866 * 14 12 10 18 18 C 1.46933 * 118.73671 * 53.86110 * 5 4 2 19 19 C 1.53620 * 108.54327 * 306.09326 * 18 5 4 20 20 C 1.53042 * 109.24165 * 54.86044 * 19 18 5 21 21 H 1.08994 * 109.46267 * 58.52523 * 20 19 18 22 22 C 1.50704 * 109.46102 * 178.49019 * 20 19 18 23 23 O 1.20823 * 120.00031 * 120.06146 * 22 20 19 24 24 O 1.34226 * 119.99534 * 300.06515 * 22 20 19 25 25 H 1.08997 * 109.47334 * 299.93359 * 1 2 3 26 26 H 1.08997 * 109.47018 * 59.93519 * 1 2 3 27 27 H 1.08998 * 109.47078 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.58296 * 305.52982 * 4 2 1 29 29 H 1.08998 * 109.70719 * 185.17055 * 4 2 1 30 30 H 0.97001 * 119.99647 * 354.74049 * 8 6 5 31 31 H 1.09001 * 109.46460 * 299.99990 * 9 8 6 32 32 H 1.08993 * 109.47162 * 59.99731 * 9 8 6 33 33 H 0.96998 * 120.00277 * 179.97438 * 13 12 10 34 34 H 1.08997 * 109.58484 * 65.92990 * 18 5 4 35 35 H 1.08999 * 109.58543 * 186.34980 * 18 5 4 36 36 H 1.09000 * 109.63525 * 294.86546 * 19 18 5 37 37 H 1.09000 * 109.45961 * 174.73788 * 19 18 5 38 38 H 0.96704 * 116.99747 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7234 1.2498 5 7 1.6516 -2.1378 1.1702 6 6 0.9749 -2.7214 2.1791 7 8 0.5982 -2.0553 3.1239 8 7 0.7204 -4.0445 2.1433 9 6 0.0875 -4.7001 3.2905 10 6 -0.0842 -6.1684 2.9982 11 1 0.2454 -6.5729 2.0526 12 6 -0.6613 -6.9955 3.9382 13 7 -1.0614 -6.5032 5.0902 14 14 -0.8749 -8.8155 3.5756 15 1 -0.3467 -9.1156 2.2205 16 1 -0.1304 -9.6118 4.5841 17 1 -2.3167 -9.1661 3.6343 18 6 2.0189 -2.9055 -0.0276 19 6 1.5030 -2.1562 -1.2654 20 6 2.0409 -0.7235 -1.2482 21 1 3.1305 -0.7448 -1.2351 22 6 1.5679 0.0052 -2.4797 23 8 0.8919 1.0006 -2.3703 24 8 1.8977 -0.4517 -3.6979 25 1 -0.3634 0.5128 0.8905 26 1 -0.3633 0.5148 -0.8894 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6008 -0.2725 2.1389 29 1 3.1274 -0.6461 1.3007 30 1 0.9563 -4.5627 1.3579 31 1 0.7167 -4.5766 4.1720 32 1 -0.8876 -4.2492 3.4741 33 1 -1.4677 -7.0851 5.7515 34 1 3.1033 -3.0023 -0.0812 35 1 1.5636 -3.8948 0.0186 36 1 0.4132 -2.1359 -1.2535 37 1 1.8476 -2.6632 -2.1666 38 1 1.5708 0.0490 -4.4579 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861456176.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:26 Heat of formation + Delta-G solvation = -122.874229 kcal Electronic energy + Delta-G solvation = -21356.771708 eV Core-core repulsion = 18006.169318 eV Total energy + Delta-G solvation = -3350.602390 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.06196 -39.67810 -37.50023 -36.32746 -34.27327 -33.37445 -32.21686 -31.67475 -27.56077 -27.44942 -25.66978 -23.16082 -22.73764 -22.06966 -19.90301 -18.74545 -18.27963 -18.19004 -16.76259 -16.09544 -15.78722 -15.66984 -15.36315 -14.68843 -14.56422 -14.07407 -13.70583 -13.54587 -13.24962 -13.09395 -12.85965 -12.12395 -12.08005 -11.91761 -11.69923 -11.63781 -11.55149 -11.11060 -10.91908 -10.90801 -10.72058 -10.65412 -10.37456 -10.27132 -9.36676 -9.32151 -8.72980 -8.41630 -7.72675 -6.14817 -4.21387 1.95976 2.76893 3.17469 3.24290 3.31799 3.34745 3.89631 4.30201 4.32969 4.41424 4.71796 4.73023 4.93634 5.09811 5.13396 5.21452 5.24849 5.42133 5.51160 5.54904 5.69105 5.77874 5.87931 5.97549 6.08350 6.12519 6.28311 6.49496 6.76743 7.12956 7.52104 7.54535 7.58515 7.65743 7.86189 8.02765 8.76457 8.90786 9.32738 9.48339 10.95493 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.031769 B = 0.004054 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.156333 B = 6905.236446 C = 7406.210898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.089 4.089 3 H 0.087 0.913 4 C 0.136 3.864 5 N -0.638 5.638 6 C 0.698 3.302 7 O -0.596 6.596 8 N -0.730 5.730 9 C 0.266 3.734 10 C -0.541 4.541 11 H 0.062 0.938 12 C 0.064 3.936 13 N -0.885 5.885 14 Si 0.903 3.097 15 H -0.272 1.272 16 H -0.282 1.282 17 H -0.282 1.282 18 C 0.116 3.884 19 C -0.129 4.129 20 C -0.073 4.073 21 H 0.110 0.890 22 C 0.483 3.517 23 O -0.509 6.509 24 O -0.517 6.517 25 H 0.058 0.942 26 H 0.070 0.930 27 H 0.057 0.943 28 H 0.100 0.900 29 H 0.062 0.938 30 H 0.385 0.615 31 H 0.024 0.976 32 H 0.025 0.975 33 H 0.265 0.735 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.079 0.921 37 H 0.086 0.914 38 H 0.408 0.592 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 8.384 10.221 -16.841 21.409 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.211 4.211 2 C -0.109 4.109 3 H 0.105 0.895 4 C 0.012 3.988 5 N -0.378 5.378 6 C 0.399 3.601 7 O -0.475 6.475 8 N -0.384 5.384 9 C 0.145 3.855 10 C -0.579 4.579 11 H 0.080 0.920 12 C -0.140 4.140 13 N -0.522 5.522 14 Si 0.731 3.269 15 H -0.197 1.197 16 H -0.208 1.208 17 H -0.208 1.208 18 C -0.009 4.009 19 C -0.168 4.168 20 C -0.092 4.092 21 H 0.128 0.872 22 C 0.325 3.675 23 O -0.396 6.396 24 O -0.329 6.329 25 H 0.077 0.923 26 H 0.089 0.911 27 H 0.076 0.924 28 H 0.118 0.882 29 H 0.080 0.920 30 H 0.220 0.780 31 H 0.042 0.958 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.088 0.912 35 H 0.106 0.894 36 H 0.097 0.903 37 H 0.105 0.895 38 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges 7.954 10.656 -15.520 20.437 hybrid contribution -0.236 -0.907 -1.106 1.450 sum 7.718 9.748 -16.626 20.761 Atomic orbital electron populations 1.22004 0.93846 1.02425 1.02860 1.21425 0.97927 0.99145 0.92401 0.89506 1.21404 0.98686 0.80468 0.98216 1.47290 1.60892 1.11010 1.18571 1.16044 0.78862 0.82951 0.82222 1.90862 1.58082 1.63306 1.35237 1.45888 1.64852 1.05832 1.21813 1.18988 0.92939 0.90981 0.82621 1.21249 1.41636 0.92586 1.02467 0.91978 1.24938 0.95048 0.99231 0.94774 1.69986 1.39973 1.35843 1.06446 0.86371 0.77908 0.84320 0.78347 1.19669 1.20820 1.20819 1.21622 1.00093 0.95260 0.83883 1.22078 1.02438 0.92839 0.99404 1.21104 1.02581 0.96151 0.89373 0.87220 1.23602 0.76536 0.82697 0.84665 1.90684 1.35935 1.25954 1.87052 1.84551 1.73008 1.58392 1.16953 0.92304 0.91147 0.92439 0.88187 0.91997 0.78016 0.95822 0.95683 0.92520 0.91224 0.89429 0.90272 0.89535 0.73381 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.04 8.40 37.16 0.31 -1.73 16 2 C -0.09 -0.99 2.36 -90.49 -0.21 -1.20 16 3 H 0.09 0.89 8.07 -51.93 -0.42 0.47 16 4 C 0.14 1.74 5.83 -3.71 -0.02 1.72 16 5 N -0.64 -9.49 2.40 -178.23 -0.43 -9.92 16 6 C 0.70 14.37 8.29 -86.92 -0.72 13.65 16 7 O -0.60 -14.82 15.77 5.29 0.08 -14.73 16 8 N -0.73 -15.60 5.46 -66.41 -0.36 -15.96 16 9 C 0.27 7.11 5.43 -5.19 -0.03 7.09 16 10 C -0.54 -14.65 9.28 -34.44 -0.32 -14.97 16 11 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 12 C 0.06 1.76 5.46 -17.82 -0.10 1.67 16 13 N -0.88 -26.12 13.29 55.43 0.74 -25.38 16 14 Si 0.90 20.76 29.54 -169.99 -5.02 15.74 16 15 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 16 H -0.28 -6.45 7.11 56.52 0.40 -6.04 16 17 H -0.28 -6.46 7.11 56.52 0.40 -6.06 16 18 C 0.12 1.26 6.42 -3.48 -0.02 1.24 16 19 C -0.13 -1.20 4.97 -26.39 -0.13 -1.33 16 20 C -0.07 -0.67 2.37 -91.72 -0.22 -0.88 16 21 H 0.11 0.79 8.14 -51.93 -0.42 0.37 16 22 C 0.48 4.68 7.34 36.01 0.26 4.95 16 23 O -0.51 -6.39 14.51 -18.75 -0.27 -6.66 16 24 O -0.52 -3.72 13.30 -39.25 -0.52 -4.24 16 25 H 0.06 0.82 8.14 -51.93 -0.42 0.40 16 26 H 0.07 0.95 5.65 -51.93 -0.29 0.65 16 27 H 0.06 0.84 5.97 -51.93 -0.31 0.53 16 28 H 0.10 1.51 7.00 -51.93 -0.36 1.15 16 29 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 30 H 0.39 7.04 5.81 -40.82 -0.24 6.80 16 31 H 0.02 0.70 8.14 -51.93 -0.42 0.28 16 32 H 0.03 0.75 8.14 -51.93 -0.42 0.32 16 33 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 34 H 0.07 0.63 8.14 -51.93 -0.42 0.21 16 35 H 0.09 0.99 5.65 -51.93 -0.29 0.69 16 36 H 0.08 0.86 6.33 -51.93 -0.33 0.53 16 37 H 0.09 0.65 8.08 -51.93 -0.42 0.23 16 38 H 0.41 1.33 9.10 45.56 0.41 1.75 16 LS Contribution 308.14 15.07 4.64 4.64 Total: -1.00 -34.65 308.14 -6.66 -41.31 By element: Atomic # 1 Polarization: 9.35 SS G_CDS: -4.32 Total: 5.03 kcal Atomic # 6 Polarization: 11.38 SS G_CDS: -1.20 Total: 10.18 kcal Atomic # 7 Polarization: -51.21 SS G_CDS: -0.05 Total: -51.26 kcal Atomic # 8 Polarization: -24.93 SS G_CDS: -0.71 Total: -25.64 kcal Atomic # 14 Polarization: 20.76 SS G_CDS: -5.02 Total: 15.74 kcal Total LS contribution 4.64 Total: 4.64 kcal Total: -34.65 -6.66 -41.31 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861456176.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -81.569 kcal (2) G-P(sol) polarization free energy of solvation -34.648 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.217 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.657 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.305 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.874 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds