Wall clock time and date at job start Mon Mar 30 2020 02:16:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.09000 * 109.49877 * 2 1 4 4 C 1.53193 * 109.50015 * 120.06472 * 2 1 3 5 5 N 1.46927 * 108.77543 * 65.31494 * 4 2 1 6 6 C 1.34772 * 120.63078 * 233.58782 * 5 4 2 7 7 O 1.21586 * 120.00413 * 5.22569 * 6 5 4 8 8 N 1.34782 * 119.99993 * 185.49754 * 6 5 4 9 9 C 1.46502 * 120.00146 * 174.74002 * 8 6 5 10 10 C 1.50701 * 109.47181 * 180.02562 * 9 8 6 11 11 H 1.08000 * 119.99727 * 0.02562 * 10 9 8 12 12 C 1.37873 * 119.99882 * 179.97438 * 10 9 8 13 13 N 1.31511 * 120.00306 * 359.97438 * 12 10 9 14 14 Si 1.86798 * 119.99847 * 179.97438 * 12 10 9 15 15 H 1.48501 * 109.47241 * 0.02562 * 14 12 10 16 16 H 1.48504 * 109.47000 * 119.99859 * 14 12 10 17 17 H 1.48499 * 109.47308 * 239.99866 * 14 12 10 18 18 C 1.46933 * 118.73671 * 53.86110 * 5 4 2 19 19 C 1.53620 * 108.54327 * 306.09326 * 18 5 4 20 20 C 1.53042 * 109.24165 * 54.86044 * 19 18 5 21 21 H 1.08994 * 109.46267 * 58.52523 * 20 19 18 22 22 C 1.50704 * 109.46102 * 178.49019 * 20 19 18 23 23 O 1.20823 * 120.00031 * 120.06146 * 22 20 19 24 24 O 1.34226 * 119.99534 * 300.06515 * 22 20 19 25 25 H 1.08997 * 109.47334 * 299.93359 * 1 2 3 26 26 H 1.08997 * 109.47018 * 59.93519 * 1 2 3 27 27 H 1.08998 * 109.47078 * 179.97438 * 1 2 3 28 28 H 1.08996 * 109.58296 * 305.52982 * 4 2 1 29 29 H 1.08998 * 109.70719 * 185.17055 * 4 2 1 30 30 H 0.97001 * 119.99647 * 354.74049 * 8 6 5 31 31 H 1.09001 * 109.46460 * 299.99990 * 9 8 6 32 32 H 1.08993 * 109.47162 * 59.99731 * 9 8 6 33 33 H 0.96998 * 120.00277 * 179.97438 * 13 12 10 34 34 H 1.08997 * 109.58484 * 65.92990 * 18 5 4 35 35 H 1.08999 * 109.58543 * 186.34980 * 18 5 4 36 36 H 1.09000 * 109.63525 * 294.86546 * 19 18 5 37 37 H 1.09000 * 109.45961 * 174.73788 * 19 18 5 38 38 H 0.96704 * 116.99747 * 179.97438 * 24 22 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8938 1.0275 0.0000 4 6 2.0414 -0.7234 1.2498 5 7 1.6516 -2.1378 1.1702 6 6 0.9749 -2.7214 2.1791 7 8 0.5982 -2.0553 3.1239 8 7 0.7204 -4.0445 2.1433 9 6 0.0875 -4.7001 3.2905 10 6 -0.0842 -6.1684 2.9982 11 1 0.2454 -6.5729 2.0526 12 6 -0.6613 -6.9955 3.9382 13 7 -1.0614 -6.5032 5.0902 14 14 -0.8749 -8.8155 3.5756 15 1 -0.3467 -9.1156 2.2205 16 1 -0.1304 -9.6118 4.5841 17 1 -2.3167 -9.1661 3.6343 18 6 2.0189 -2.9055 -0.0276 19 6 1.5030 -2.1562 -1.2654 20 6 2.0409 -0.7235 -1.2482 21 1 3.1305 -0.7448 -1.2351 22 6 1.5679 0.0052 -2.4797 23 8 0.8919 1.0006 -2.3703 24 8 1.8977 -0.4517 -3.6979 25 1 -0.3634 0.5128 0.8905 26 1 -0.3633 0.5148 -0.8894 27 1 -0.3633 -1.0276 -0.0005 28 1 1.6008 -0.2725 2.1389 29 1 3.1274 -0.6461 1.3007 30 1 0.9563 -4.5627 1.3579 31 1 0.7167 -4.5766 4.1720 32 1 -0.8876 -4.2492 3.4741 33 1 -1.4677 -7.0851 5.7515 34 1 3.1033 -3.0023 -0.0812 35 1 1.5636 -3.8948 0.0186 36 1 0.4132 -2.1359 -1.2535 37 1 1.8476 -2.6632 -2.1666 38 1 1.5708 0.0490 -4.4579 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861456176.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:16:26 Heat of formation + Delta-G solvation = -148.747685 kcal Electronic energy + Delta-G solvation = -21357.893665 eV Core-core repulsion = 18006.169318 eV Total energy + Delta-G solvation = -3351.724347 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -41.97037 -40.93124 -38.70348 -37.06668 -36.18524 -34.81970 -33.92576 -32.71062 -29.41963 -28.44716 -27.01885 -24.59489 -24.03814 -23.09353 -21.32345 -20.11741 -19.37185 -18.97289 -18.10354 -17.49093 -17.20245 -16.73831 -16.64045 -16.36990 -15.72847 -15.26816 -15.00914 -14.74514 -14.46729 -14.36699 -14.04572 -13.86539 -13.68784 -12.97227 -12.91986 -12.80624 -12.73208 -12.64876 -12.42805 -12.17161 -12.03368 -11.62023 -11.56871 -11.42102 -11.30052 -11.01304 -10.79902 -10.00575 -9.34679 -8.26749 -6.43261 1.23892 1.44938 1.46562 1.59618 1.80804 2.12477 2.28735 2.40375 3.08531 3.21249 3.48958 3.65821 3.95718 3.96569 4.18562 4.35381 4.39414 4.57262 4.61748 4.72590 4.72760 4.85400 4.89822 5.05583 5.09471 5.13511 5.16753 5.29060 5.35645 5.50458 5.62416 5.71912 5.76857 5.87306 6.14456 6.68902 7.05610 7.22282 7.27465 7.74348 8.85965 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.031769 B = 0.004054 C = 0.003780 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 881.156333 B = 6905.236446 C = 7406.210898 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C -0.082 4.082 3 H 0.100 0.900 4 C 0.133 3.867 5 N -0.626 5.626 6 C 0.693 3.307 7 O -0.648 6.648 8 N -0.724 5.724 9 C 0.285 3.715 10 C -0.552 4.552 11 H 0.084 0.916 12 C 0.004 3.996 13 N -0.932 5.932 14 Si 0.986 3.014 15 H -0.251 1.251 16 H -0.279 1.279 17 H -0.281 1.281 18 C 0.108 3.892 19 C -0.121 4.121 20 C -0.070 4.070 21 H 0.145 0.855 22 C 0.490 3.510 23 O -0.544 6.544 24 O -0.508 6.508 25 H 0.038 0.962 26 H 0.069 0.931 27 H 0.039 0.961 28 H 0.068 0.932 29 H 0.098 0.902 30 H 0.403 0.597 31 H -0.015 1.015 32 H -0.019 1.019 33 H 0.268 0.732 34 H 0.105 0.895 35 H 0.084 0.916 36 H 0.058 0.942 37 H 0.117 0.883 38 H 0.426 0.574 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.410 8.947 -19.951 24.217 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.101 4.101 3 H 0.118 0.882 4 C 0.010 3.990 5 N -0.364 5.364 6 C 0.394 3.606 7 O -0.531 6.531 8 N -0.380 5.380 9 C 0.162 3.838 10 C -0.590 4.590 11 H 0.102 0.898 12 C -0.196 4.196 13 N -0.571 5.571 14 Si 0.809 3.191 15 H -0.174 1.174 16 H -0.204 1.204 17 H -0.206 1.206 18 C -0.014 4.014 19 C -0.159 4.159 20 C -0.089 4.089 21 H 0.162 0.838 22 C 0.334 3.666 23 O -0.434 6.434 24 O -0.322 6.322 25 H 0.058 0.942 26 H 0.088 0.912 27 H 0.058 0.942 28 H 0.086 0.914 29 H 0.116 0.884 30 H 0.241 0.759 31 H 0.003 0.997 32 H -0.001 1.001 33 H 0.077 0.923 34 H 0.123 0.877 35 H 0.102 0.898 36 H 0.077 0.923 37 H 0.135 0.865 38 H 0.288 0.712 Dipole moment (debyes) X Y Z Total from point charges 10.033 9.397 -18.747 23.247 hybrid contribution -0.845 -0.409 -0.207 0.962 sum 9.188 8.988 -18.954 22.901 Atomic orbital electron populations 1.21940 0.96021 1.00870 1.01831 1.21325 0.95936 1.00022 0.92834 0.88189 1.21589 1.00497 0.78980 0.97915 1.47294 1.58884 1.12013 1.18185 1.16245 0.78997 0.82411 0.82928 1.90823 1.60142 1.64296 1.37866 1.45462 1.64973 1.06476 1.21101 1.18393 0.90307 0.91758 0.83342 1.21617 1.41573 0.92411 1.03407 0.89768 1.26066 0.94298 1.04933 0.94280 1.70153 1.40946 1.38111 1.07854 0.85095 0.77790 0.77132 0.79079 1.17429 1.20442 1.20630 1.21994 1.02279 0.94685 0.82446 1.22016 1.01217 0.93073 0.99608 1.21087 1.04449 0.95287 0.88047 0.83784 1.23559 0.75654 0.81985 0.85434 1.90688 1.37546 1.27607 1.87597 1.84494 1.72537 1.58309 1.16840 0.94243 0.91203 0.94223 0.91367 0.88426 0.75934 0.99713 1.00058 0.92286 0.87650 0.89801 0.92331 0.86456 0.71226 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.03 8.40 71.98 0.60 -3.43 16 2 C -0.08 -1.68 2.36 -10.71 -0.03 -1.70 16 3 H 0.10 1.85 8.07 -2.39 -0.02 1.83 16 4 C 0.13 3.24 5.83 86.36 0.50 3.75 16 5 N -0.63 -18.03 2.40 -836.06 -2.01 -20.04 16 6 C 0.69 29.36 8.29 179.05 1.49 30.85 16 7 O -0.65 -34.20 15.77 -3.99 -0.06 -34.27 16 8 N -0.72 -31.64 5.46 -482.30 -2.63 -34.27 16 9 C 0.29 16.03 5.43 85.63 0.47 16.49 16 10 C -0.55 -30.13 9.28 25.60 0.24 -29.89 16 11 H 0.08 4.12 7.60 -2.91 -0.02 4.10 16 12 C 0.00 0.20 5.46 84.65 0.46 0.67 16 13 N -0.93 -56.64 13.29 21.45 0.28 -56.36 16 14 Si 0.99 42.15 29.54 68.60 2.03 44.17 16 15 H -0.25 -9.80 7.11 99.48 0.71 -9.09 16 16 H -0.28 -11.70 7.11 99.48 0.71 -10.99 16 17 H -0.28 -11.85 7.11 99.48 0.71 -11.14 16 18 C 0.11 2.03 6.42 86.51 0.56 2.58 16 19 C -0.12 -1.84 4.97 30.82 0.15 -1.69 16 20 C -0.07 -1.02 2.37 -11.51 -0.03 -1.05 16 21 H 0.14 1.24 8.14 -2.39 -0.02 1.22 16 22 C 0.49 8.00 7.34 71.24 0.52 8.53 16 23 O -0.54 -12.70 14.51 21.97 0.32 -12.38 16 24 O -0.51 -5.32 13.30 -51.38 -0.68 -6.00 16 25 H 0.04 1.17 8.14 -2.39 -0.02 1.15 16 26 H 0.07 1.89 5.65 -2.39 -0.01 1.88 16 27 H 0.04 1.19 5.97 -2.39 -0.01 1.17 16 28 H 0.07 2.14 7.00 -2.39 -0.02 2.12 16 29 H 0.10 1.75 8.14 -2.39 -0.02 1.73 16 30 H 0.40 14.43 5.81 -92.71 -0.54 13.89 16 31 H -0.02 -0.95 8.14 -2.39 -0.02 -0.97 16 32 H -0.02 -1.19 8.14 -2.39 -0.02 -1.20 16 33 H 0.27 15.16 8.31 -92.71 -0.77 14.39 16 34 H 0.11 1.35 8.14 -2.39 -0.02 1.33 16 35 H 0.08 1.66 5.65 -2.39 -0.01 1.65 16 36 H 0.06 1.17 6.33 -2.39 -0.02 1.15 16 37 H 0.12 1.16 8.08 -2.39 -0.02 1.14 16 38 H 0.43 1.30 9.10 -74.05 -0.67 0.62 16 Total: -1.00 -80.13 308.14 2.07 -78.06 By element: Atomic # 1 Polarization: 16.10 SS G_CDS: -0.11 Total: 15.98 kcal Atomic # 6 Polarization: 20.17 SS G_CDS: 4.94 Total: 25.10 kcal Atomic # 7 Polarization: -106.31 SS G_CDS: -4.36 Total: -110.67 kcal Atomic # 8 Polarization: -52.23 SS G_CDS: -0.43 Total: -52.65 kcal Atomic # 14 Polarization: 42.15 SS G_CDS: 2.03 Total: 44.17 kcal Total: -80.13 2.07 -78.06 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861456176.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -70.684 kcal (2) G-P(sol) polarization free energy of solvation -80.129 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -150.813 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.065 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -78.064 kcal (6) G-S(sol) free energy of system = (1) + (5) -148.748 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds