Wall clock time and date at job start Mon Mar 30 2020 01:10:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47325 * 2 1 4 4 C 1.50704 * 109.46960 * 240.00116 * 2 1 3 5 5 H 1.08004 * 119.99980 * 239.99913 * 4 2 1 6 6 C 1.37873 * 120.00135 * 60.00294 * 4 2 1 7 7 N 1.31515 * 120.00030 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00034 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.46962 * 89.99864 * 8 6 4 10 10 H 1.48503 * 109.46610 * 209.99653 * 8 6 4 11 11 H 1.48498 * 109.47047 * 329.99494 * 8 6 4 12 12 C 1.53002 * 109.47470 * 120.00456 * 2 1 3 13 13 N 1.46504 * 109.46587 * 299.99824 * 12 2 1 14 14 C 1.34777 * 120.00135 * 179.97438 * 13 12 2 15 15 O 1.21284 * 119.99501 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00470 * 180.02562 * 14 13 12 17 17 H 1.08998 * 109.31800 * 40.22126 * 16 14 13 18 18 C 1.53138 * 109.39429 * 280.45325 * 16 14 13 19 19 C 1.53478 * 108.36169 * 191.88675 * 18 16 14 20 20 O 1.45432 * 108.11208 * 61.72787 * 19 18 16 21 21 C 1.34231 * 117.11660 * 313.30359 * 20 19 18 22 22 O 1.21513 * 118.47225 * 197.06070 * 21 20 19 23 23 N 1.33726 * 123.06714 * 17.34888 * 21 20 19 24 24 H 1.08998 * 109.46834 * 299.99390 * 1 2 3 25 25 H 1.08993 * 109.47014 * 60.00071 * 1 2 3 26 26 H 1.09003 * 109.46745 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47501 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.47297 * 300.00373 * 3 2 1 29 29 H 1.09002 * 109.47136 * 59.99715 * 3 2 1 30 30 H 0.97000 * 120.00322 * 180.02562 * 7 6 4 31 31 H 1.08993 * 109.47373 * 180.02562 * 12 2 1 32 32 H 1.08994 * 109.47165 * 59.99546 * 12 2 1 33 33 H 0.97002 * 120.00115 * 0.02562 * 13 12 2 34 34 H 1.08998 * 109.68114 * 311.60003 * 18 16 14 35 35 H 1.08998 * 109.68932 * 72.16342 * 18 16 14 36 36 H 1.09004 * 109.73407 * 181.38556 * 19 18 16 37 37 H 1.09004 * 109.73369 * 302.02240 * 19 18 16 38 38 H 0.97001 * 118.52457 * 177.40893 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3213 -1.1204 -4.0080 9 1 1.3427 -2.1616 -4.4119 10 1 2.4865 -0.1413 -5.1123 11 1 3.6293 -1.7583 -3.7123 12 6 2.0401 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8769 -0.4914 3.6695 15 8 2.5734 -1.4781 3.7807 16 6 1.3742 0.2186 4.9000 17 1 0.3414 0.5287 4.7407 18 6 2.2408 1.4531 5.1645 19 6 1.9098 1.9850 6.5656 20 8 2.2422 0.9504 7.5322 21 6 1.8245 -0.2963 7.2619 22 8 1.8014 -1.1082 8.1657 23 7 1.4378 -0.6882 6.0433 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.7082 1.1610 -3.4844 31 1 3.1300 -0.7209 1.2494 32 1 1.6767 -1.7489 1.2492 33 1 0.9938 0.7577 2.3564 34 1 3.2947 1.1792 5.1153 35 1 2.0250 2.2196 4.4203 36 1 2.4978 2.8803 6.7679 37 1 0.8474 2.2207 6.6283 38 1 1.1841 -1.6154 5.9136 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000861949716.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:53 Heat of formation + Delta-G solvation = -122.129980 kcal Electronic energy + Delta-G solvation = -21246.982285 eV Core-core repulsion = 17896.412168 eV Total energy + Delta-G solvation = -3350.570117 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -41.31126 -39.45150 -37.30206 -36.67103 -35.38518 -33.54997 -31.88698 -30.93705 -27.73997 -25.86206 -25.62613 -24.83663 -24.14976 -20.80411 -20.28605 -19.03145 -18.52891 -17.86574 -17.42184 -16.21612 -15.85837 -15.48881 -15.12226 -14.86364 -14.81509 -14.65195 -14.06189 -13.66702 -13.04953 -12.95050 -12.63454 -12.36123 -12.29195 -11.88536 -11.50926 -11.30747 -10.97379 -10.96128 -10.78165 -10.71062 -10.51849 -10.30346 -10.00737 -9.77476 -9.55423 -9.25305 -8.90811 -8.66680 -8.45714 -6.11912 -4.22298 2.35367 2.53104 2.69666 3.17006 3.22307 3.29821 3.33229 3.43936 4.10627 4.27289 4.33373 4.48813 4.66767 4.84233 4.92866 5.10514 5.15397 5.49479 5.67182 6.05380 6.16465 6.35453 6.57198 6.60555 6.66998 6.76154 6.80677 6.87646 7.21290 7.42137 7.42595 7.58985 7.75182 7.88858 7.95562 8.01731 8.25283 8.37446 8.78132 9.44343 10.89483 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.044261 B = 0.003813 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.458807 B = 7341.721287 C = 7628.946018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.131 4.131 2 C 0.056 3.944 3 C -0.131 4.131 4 C -0.508 4.508 5 H 0.058 0.942 6 C 0.067 3.933 7 N -0.886 5.886 8 Si 0.893 3.107 9 H -0.281 1.281 10 H -0.286 1.286 11 H -0.274 1.274 12 C 0.131 3.869 13 N -0.707 5.707 14 C 0.495 3.505 15 O -0.535 6.535 16 C 0.116 3.884 17 H 0.104 0.896 18 C -0.167 4.167 19 C 0.063 3.937 20 O -0.343 6.343 21 C 0.663 3.337 22 O -0.535 6.535 23 N -0.709 5.709 24 H 0.006 0.994 25 H 0.086 0.914 26 H 0.027 0.973 27 H 0.027 0.973 28 H 0.086 0.914 29 H 0.005 0.995 30 H 0.261 0.739 31 H 0.057 0.943 32 H 0.058 0.942 33 H 0.400 0.600 34 H 0.095 0.905 35 H 0.113 0.887 36 H 0.120 0.880 37 H 0.082 0.918 38 H 0.424 0.576 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.036 6.223 11.390 13.138 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.189 4.189 2 C 0.055 3.945 3 C -0.188 4.188 4 C -0.547 4.547 5 H 0.076 0.924 6 C -0.134 4.134 7 N -0.524 5.524 8 Si 0.721 3.279 9 H -0.207 1.207 10 H -0.212 1.212 11 H -0.199 1.199 12 C 0.009 3.991 13 N -0.358 5.358 14 C 0.278 3.722 15 O -0.412 6.412 16 C 0.006 3.994 17 H 0.122 0.878 18 C -0.205 4.205 19 C -0.012 4.012 20 O -0.255 6.255 21 C 0.415 3.585 22 O -0.420 6.420 23 N -0.377 5.377 24 H 0.025 0.975 25 H 0.105 0.895 26 H 0.046 0.954 27 H 0.046 0.954 28 H 0.105 0.895 29 H 0.024 0.976 30 H 0.071 0.929 31 H 0.076 0.924 32 H 0.076 0.924 33 H 0.235 0.765 34 H 0.113 0.887 35 H 0.132 0.868 36 H 0.138 0.862 37 H 0.100 0.900 38 H 0.264 0.736 Dipole moment (debyes) X Y Z Total from point charges -1.416 5.573 12.002 13.308 hybrid contribution -0.124 -0.352 -1.389 1.438 sum -1.540 5.221 10.613 11.928 Atomic orbital electron populations 1.21841 0.97668 0.99270 1.00119 1.18372 0.92850 0.92798 0.90487 1.21836 0.98639 0.98261 1.00106 1.20963 1.31683 1.12185 0.89828 0.92416 1.24868 0.94782 0.94872 0.98885 1.69788 1.36558 1.22695 1.23355 0.86565 0.79364 0.79415 0.82516 1.20665 1.21219 1.19878 1.21813 0.98347 0.95920 0.83063 1.46303 1.52107 1.31658 1.05755 1.20413 0.81692 0.85349 0.84778 1.90744 1.37725 1.26206 1.86539 1.21103 1.01436 0.90620 0.86200 0.87830 1.22538 1.02097 0.97059 0.98813 1.23507 1.02446 0.89373 0.85840 1.86726 1.73545 1.16667 1.48536 1.17749 0.76073 0.81972 0.82665 1.91039 1.57935 1.48576 1.44462 1.45092 1.70481 1.15154 1.06933 0.97543 0.89507 0.95370 0.95374 0.89513 0.97562 0.92926 0.92435 0.92403 0.76492 0.88670 0.86833 0.86155 0.89969 0.73623 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.13 -2.70 8.08 37.16 0.30 -2.40 16 2 C 0.06 1.18 0.50 -155.66 -0.08 1.10 16 3 C -0.13 -2.66 8.08 37.15 0.30 -2.36 16 4 C -0.51 -12.58 8.01 -34.44 -0.28 -12.86 16 5 H 0.06 1.46 7.74 -52.48 -0.41 1.05 16 6 C 0.07 1.69 5.15 -17.82 -0.09 1.60 16 7 N -0.89 -22.44 9.35 55.43 0.52 -21.92 16 8 Si 0.89 19.95 29.54 -169.99 -5.02 14.93 16 9 H -0.28 -6.29 7.11 56.52 0.40 -5.89 16 10 H -0.29 -6.39 7.11 56.52 0.40 -5.99 16 11 H -0.27 -6.14 7.11 56.52 0.40 -5.74 16 12 C 0.13 2.49 4.50 -4.04 -0.02 2.47 16 13 N -0.71 -10.37 4.96 -60.29 -0.30 -10.67 16 14 C 0.49 7.07 6.99 -10.99 -0.08 6.99 16 15 O -0.54 -9.98 16.39 5.55 0.09 -9.89 16 16 C 0.12 1.16 3.53 -69.25 -0.24 0.91 16 17 H 0.10 0.74 8.14 -51.93 -0.42 0.32 16 18 C -0.17 -1.29 5.56 -26.41 -0.15 -1.44 16 19 C 0.06 0.43 7.20 37.41 0.27 0.70 16 20 O -0.34 -4.15 10.50 -39.33 -0.41 -4.57 16 21 C 0.66 9.39 8.55 53.59 0.46 9.85 16 22 O -0.54 -9.63 17.95 -19.41 -0.35 -9.98 16 23 N -0.71 -8.60 4.85 -60.48 -0.29 -8.90 16 24 H 0.01 0.10 6.86 -51.93 -0.36 -0.26 16 25 H 0.09 2.02 6.07 -51.93 -0.32 1.70 16 26 H 0.03 0.58 8.14 -51.93 -0.42 0.16 16 27 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 28 H 0.09 2.00 6.07 -51.92 -0.32 1.69 16 29 H 0.01 0.09 6.86 -51.93 -0.36 -0.26 16 30 H 0.26 6.41 8.31 -40.82 -0.34 6.08 16 31 H 0.06 1.17 8.14 -51.93 -0.42 0.75 16 32 H 0.06 1.18 8.14 -51.93 -0.42 0.75 16 33 H 0.40 4.98 6.16 -40.82 -0.25 4.73 16 34 H 0.09 0.91 8.09 -51.93 -0.42 0.49 16 35 H 0.11 0.59 8.14 -51.93 -0.42 0.17 16 36 H 0.12 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.08 0.41 8.14 -51.93 -0.42 -0.02 16 38 H 0.42 5.31 8.51 -40.82 -0.35 4.96 16 LS Contribution 310.84 15.07 4.68 4.68 Total: -1.00 -30.84 310.84 -5.97 -36.81 By element: Atomic # 1 Polarization: 10.21 SS G_CDS: -5.29 Total: 4.92 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: 0.39 Total: 4.56 kcal Atomic # 7 Polarization: -41.41 SS G_CDS: -0.07 Total: -41.48 kcal Atomic # 8 Polarization: -23.76 SS G_CDS: -0.67 Total: -24.43 kcal Atomic # 14 Polarization: 19.95 SS G_CDS: -5.02 Total: 14.93 kcal Total LS contribution 4.68 Total: 4.68 kcal Total: -30.84 -5.97 -36.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861949716.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.319 kcal (2) G-P(sol) polarization free energy of solvation -30.840 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.158 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.972 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.811 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.130 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds