Wall clock time and date at job start Mon Mar 30 2020 01:10:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.52995 * 109.47325 * 2 1 4 4 C 1.50704 * 109.46960 * 240.00116 * 2 1 3 5 5 H 1.08004 * 119.99980 * 239.99913 * 4 2 1 6 6 C 1.37873 * 120.00135 * 60.00294 * 4 2 1 7 7 N 1.31515 * 120.00030 * 359.97438 * 6 4 2 8 8 Si 1.86807 * 120.00034 * 180.02562 * 6 4 2 9 9 H 1.48495 * 109.46962 * 89.99864 * 8 6 4 10 10 H 1.48503 * 109.46610 * 209.99653 * 8 6 4 11 11 H 1.48498 * 109.47047 * 329.99494 * 8 6 4 12 12 C 1.53002 * 109.47470 * 120.00456 * 2 1 3 13 13 N 1.46504 * 109.46587 * 299.99824 * 12 2 1 14 14 C 1.34777 * 120.00135 * 179.97438 * 13 12 2 15 15 O 1.21284 * 119.99501 * 359.97438 * 14 13 12 16 16 C 1.50699 * 120.00470 * 180.02562 * 14 13 12 17 17 H 1.08998 * 109.31800 * 40.22126 * 16 14 13 18 18 C 1.53138 * 109.39429 * 280.45325 * 16 14 13 19 19 C 1.53478 * 108.36169 * 191.88675 * 18 16 14 20 20 O 1.45432 * 108.11208 * 61.72787 * 19 18 16 21 21 C 1.34231 * 117.11660 * 313.30359 * 20 19 18 22 22 O 1.21513 * 118.47225 * 197.06070 * 21 20 19 23 23 N 1.33726 * 123.06714 * 17.34888 * 21 20 19 24 24 H 1.08998 * 109.46834 * 299.99390 * 1 2 3 25 25 H 1.08993 * 109.47014 * 60.00071 * 1 2 3 26 26 H 1.09003 * 109.46745 * 179.97438 * 1 2 3 27 27 H 1.09003 * 109.47501 * 180.02562 * 3 2 1 28 28 H 1.09007 * 109.47297 * 300.00373 * 3 2 1 29 29 H 1.09002 * 109.47136 * 59.99715 * 3 2 1 30 30 H 0.97000 * 120.00322 * 180.02562 * 7 6 4 31 31 H 1.08993 * 109.47373 * 180.02562 * 12 2 1 32 32 H 1.08994 * 109.47165 * 59.99546 * 12 2 1 33 33 H 0.97002 * 120.00115 * 0.02562 * 13 12 2 34 34 H 1.08998 * 109.68114 * 311.60003 * 18 16 14 35 35 H 1.08998 * 109.68932 * 72.16342 * 18 16 14 36 36 H 1.09004 * 109.73407 * 181.38556 * 19 18 16 37 37 H 1.09004 * 109.73369 * 302.02240 * 19 18 16 38 38 H 0.97001 * 118.52457 * 177.40893 * 23 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 6 2.0323 -0.7104 -1.2305 5 1 2.6532 -1.5885 -1.1315 6 6 1.6993 -0.2393 -2.4827 7 7 0.9428 0.8297 -2.6034 8 14 2.3213 -1.1204 -4.0080 9 1 1.3427 -2.1616 -4.4119 10 1 2.4865 -0.1413 -5.1123 11 1 3.6293 -1.7583 -3.7123 12 6 2.0401 -0.7213 1.2492 13 7 1.5517 -0.0307 2.4454 14 6 1.8769 -0.4914 3.6695 15 8 2.5734 -1.4781 3.7807 16 6 1.3742 0.2186 4.9000 17 1 0.3414 0.5287 4.7407 18 6 2.2408 1.4531 5.1645 19 6 1.9098 1.9850 6.5656 20 8 2.2422 0.9504 7.5322 21 6 1.8245 -0.2963 7.2619 22 8 1.8014 -1.1082 8.1657 23 7 1.4378 -0.6882 6.0433 24 1 -0.3633 0.5137 0.8900 25 1 -0.3633 0.5138 -0.8899 26 1 -0.3633 -1.0277 -0.0005 27 1 3.1300 1.4425 -0.0005 28 1 1.6766 1.9564 -0.8900 29 1 1.6767 1.9563 0.8900 30 1 0.7082 1.1610 -3.4844 31 1 3.1300 -0.7209 1.2494 32 1 1.6767 -1.7489 1.2492 33 1 0.9938 0.7577 2.3564 34 1 3.2947 1.1792 5.1153 35 1 2.0250 2.2196 4.4203 36 1 2.4978 2.8803 6.7679 37 1 0.8474 2.2207 6.6283 38 1 1.1841 -1.6154 5.9136 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000861949716.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:52 Heat of formation + Delta-G solvation = -145.466543 kcal Electronic energy + Delta-G solvation = -21247.994234 eV Core-core repulsion = 17896.412168 eV Total energy + Delta-G solvation = -3351.582066 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.26422 -40.67695 -38.36751 -38.16583 -36.39185 -35.08095 -33.01541 -32.34929 -28.73718 -27.51294 -27.34291 -26.25116 -25.08986 -22.02616 -21.07759 -20.63103 -19.41138 -19.07153 -18.45488 -17.71269 -17.12127 -16.77970 -16.42891 -16.29976 -15.83895 -15.55820 -15.14806 -14.90191 -14.75995 -14.32528 -13.97222 -13.48358 -13.22714 -13.11114 -13.01210 -12.69323 -12.65378 -12.59941 -12.22033 -12.12956 -11.86347 -11.65348 -11.45279 -11.29409 -11.03138 -10.68526 -10.38552 -10.35670 -9.99340 -8.01839 -6.16633 1.35565 1.42153 1.46186 1.48461 1.53532 1.68190 2.16761 2.46074 2.53114 3.22434 3.38817 3.53243 3.81541 3.90661 4.24475 4.32371 4.44720 4.53266 4.65843 4.75317 4.90658 4.94230 5.02786 5.10247 5.13050 5.23778 5.35367 5.57174 5.61092 5.69640 5.71927 6.21135 6.25211 6.46044 6.48705 6.59335 6.87786 6.92945 7.21390 7.51310 8.96411 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.044261 B = 0.003813 C = 0.003669 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 632.458807 B = 7341.721287 C = 7628.946018 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.122 4.122 2 C 0.050 3.950 3 C -0.121 4.121 4 C -0.529 4.529 5 H 0.041 0.959 6 C 0.032 3.968 7 N -0.896 5.896 8 Si 0.938 3.062 9 H -0.281 1.281 10 H -0.283 1.283 11 H -0.278 1.278 12 C 0.148 3.852 13 N -0.696 5.696 14 C 0.498 3.502 15 O -0.583 6.583 16 C 0.122 3.878 17 H 0.150 0.850 18 C -0.164 4.164 19 C 0.058 3.942 20 O -0.358 6.358 21 C 0.665 3.335 22 O -0.586 6.586 23 N -0.705 5.705 24 H 0.045 0.955 25 H 0.060 0.940 26 H 0.015 0.985 27 H 0.017 0.983 28 H 0.060 0.940 29 H 0.047 0.953 30 H 0.260 0.740 31 H 0.039 0.961 32 H 0.038 0.962 33 H 0.415 0.585 34 H 0.073 0.927 35 H 0.151 0.849 36 H 0.151 0.849 37 H 0.112 0.888 38 H 0.420 0.580 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -2.966 8.318 12.032 14.925 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.180 4.180 2 C 0.050 3.950 3 C -0.179 4.179 4 C -0.568 4.568 5 H 0.059 0.941 6 C -0.168 4.168 7 N -0.535 5.535 8 Si 0.766 3.234 9 H -0.207 1.207 10 H -0.209 1.209 11 H -0.203 1.203 12 C 0.024 3.976 13 N -0.348 5.348 14 C 0.283 3.717 15 O -0.463 6.463 16 C 0.014 3.986 17 H 0.167 0.833 18 C -0.202 4.202 19 C -0.015 4.015 20 O -0.270 6.270 21 C 0.419 3.581 22 O -0.475 6.475 23 N -0.372 5.372 24 H 0.064 0.936 25 H 0.079 0.921 26 H 0.035 0.965 27 H 0.036 0.964 28 H 0.079 0.921 29 H 0.066 0.934 30 H 0.069 0.931 31 H 0.057 0.943 32 H 0.057 0.943 33 H 0.253 0.747 34 H 0.092 0.908 35 H 0.169 0.831 36 H 0.168 0.832 37 H 0.130 0.870 38 H 0.259 0.741 Dipole moment (debyes) X Y Z Total from point charges -2.365 7.730 12.622 14.989 hybrid contribution 0.188 -0.967 -1.623 1.899 sum -2.177 6.763 10.999 13.094 Atomic orbital electron populations 1.21681 0.96886 0.98669 1.00728 1.18372 0.93391 0.93251 0.90027 1.21671 0.97908 0.97507 1.00796 1.21287 1.31649 1.12104 0.91765 0.94055 1.25365 0.95206 0.95552 1.00706 1.69885 1.36908 1.23131 1.23530 0.85864 0.78612 0.78576 0.80361 1.20697 1.20885 1.20295 1.21286 0.97100 0.95135 0.84111 1.46009 1.52225 1.31860 1.04717 1.21135 0.80382 0.84603 0.85593 1.90737 1.39802 1.28554 1.87226 1.21365 1.04161 0.90197 0.82891 0.83326 1.22637 1.00321 0.96675 1.00609 1.24000 1.05008 0.88494 0.83957 1.86698 1.73236 1.16531 1.50494 1.17790 0.75479 0.82360 0.82504 1.90993 1.60069 1.50382 1.46053 1.45123 1.69578 1.15443 1.07010 0.93613 0.92096 0.96543 0.96397 0.92149 0.93428 0.93070 0.94287 0.94332 0.74664 0.90779 0.83140 0.83170 0.87026 0.74134 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -4.81 8.08 71.98 0.58 -4.23 16 2 C 0.05 2.09 0.50 -52.93 -0.03 2.06 16 3 C -0.12 -4.70 8.08 71.98 0.58 -4.12 16 4 C -0.53 -26.45 8.01 25.60 0.21 -26.25 16 5 H 0.04 2.14 7.74 -2.91 -0.02 2.12 16 6 C 0.03 1.60 5.15 84.65 0.44 2.03 16 7 N -0.90 -45.22 9.35 21.45 0.20 -45.02 16 8 Si 0.94 41.08 29.54 68.60 2.03 43.11 16 9 H -0.28 -12.23 7.11 99.48 0.71 -11.53 16 10 H -0.28 -12.18 7.11 99.48 0.71 -11.47 16 11 H -0.28 -12.23 7.11 99.48 0.71 -11.52 16 12 C 0.15 5.52 4.50 86.38 0.39 5.91 16 13 N -0.70 -18.50 4.96 -463.06 -2.30 -20.79 16 14 C 0.50 13.14 6.99 87.66 0.61 13.75 16 15 O -0.58 -21.58 16.39 -3.04 -0.05 -21.63 16 16 C 0.12 2.00 3.53 44.37 0.16 2.16 16 17 H 0.15 1.25 8.14 -2.39 -0.02 1.23 16 18 C -0.16 -1.85 5.56 30.80 0.17 -1.68 16 19 C 0.06 0.54 7.20 72.14 0.52 1.06 16 20 O -0.36 -7.89 10.50 -51.36 -0.54 -8.43 16 21 C 0.67 18.18 8.55 129.95 1.11 19.29 16 22 O -0.59 -21.35 17.95 19.92 0.36 -20.99 16 23 N -0.71 -15.96 4.85 -577.02 -2.80 -18.75 16 24 H 0.05 1.40 6.86 -2.39 -0.02 1.38 16 25 H 0.06 2.76 6.07 -2.39 -0.01 2.74 16 26 H 0.02 0.64 8.14 -2.39 -0.02 0.62 16 27 H 0.02 0.69 8.14 -2.39 -0.02 0.67 16 28 H 0.06 2.70 6.07 -2.38 -0.01 2.69 16 29 H 0.05 1.41 6.86 -2.39 -0.02 1.39 16 30 H 0.26 12.72 8.31 -92.71 -0.77 11.95 16 31 H 0.04 1.59 8.14 -2.39 -0.02 1.57 16 32 H 0.04 1.58 8.14 -2.39 -0.02 1.56 16 33 H 0.41 8.39 6.16 -92.71 -0.57 7.82 16 34 H 0.07 1.21 8.09 -2.39 -0.02 1.19 16 35 H 0.15 0.63 8.14 -2.39 -0.02 0.61 16 36 H 0.15 0.56 8.14 -2.38 -0.02 0.54 16 37 H 0.11 0.46 8.14 -2.38 -0.02 0.44 16 38 H 0.42 10.25 8.51 -92.71 -0.79 9.46 16 Total: -1.00 -70.42 310.84 1.37 -69.05 By element: Atomic # 1 Polarization: 13.75 SS G_CDS: -0.27 Total: 13.48 kcal Atomic # 6 Polarization: 5.24 SS G_CDS: 4.74 Total: 9.98 kcal Atomic # 7 Polarization: -79.68 SS G_CDS: -4.89 Total: -84.57 kcal Atomic # 8 Polarization: -50.82 SS G_CDS: -0.23 Total: -51.05 kcal Atomic # 14 Polarization: 41.08 SS G_CDS: 2.03 Total: 43.11 kcal Total: -70.42 1.37 -69.05 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000861949716.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -76.420 kcal (2) G-P(sol) polarization free energy of solvation -70.415 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -146.835 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.368 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.047 kcal (6) G-S(sol) free energy of system = (1) + (5) -145.467 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds