Wall clock time and date at job start Mon Mar 30 2020 01:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46907 * 2 1 4 4 N 1.46500 * 109.47098 * 120.00099 * 2 1 3 5 5 C 1.46495 * 119.99989 * 119.20896 * 4 2 1 6 6 C 1.50703 * 109.47337 * 270.00263 * 5 4 2 7 7 H 1.08001 * 119.99671 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00421 * 180.02562 * 6 5 4 9 9 N 1.31523 * 119.99890 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00563 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47200 * 89.99616 * 10 8 6 12 12 H 1.48500 * 109.47562 * 210.00158 * 10 8 6 13 13 H 1.48501 * 109.46788 * 330.00001 * 10 8 6 14 14 C 1.34774 * 119.99753 * 299.20944 * 4 2 1 15 15 O 1.21274 * 120.00582 * 5.30990 * 14 4 2 16 16 C 1.50707 * 119.99892 * 185.30587 * 14 4 2 17 17 N 1.46496 * 109.47206 * 178.77641 * 16 14 4 18 18 C 1.47086 * 125.55978 * 90.00384 * 17 16 14 19 19 C 1.54095 * 103.77680 * 180.02562 * 18 17 16 20 20 O 1.45695 * 104.13039 * 359.92853 * 19 18 17 21 21 C 1.34004 * 125.55700 * 270.02621 * 17 16 14 22 22 O 1.21512 * 123.07558 * 0.02562 * 21 17 16 23 23 H 1.08996 * 109.47317 * 306.60035 * 1 2 3 24 24 H 1.08999 * 109.47211 * 66.60671 * 1 2 3 25 25 H 1.09000 * 109.47123 * 186.60241 * 1 2 3 26 26 H 1.09000 * 109.46951 * 240.00161 * 2 1 3 27 27 H 1.09001 * 109.46564 * 173.87814 * 3 2 1 28 28 H 1.08991 * 109.47436 * 293.88094 * 3 2 1 29 29 H 1.09000 * 109.47058 * 53.88576 * 3 2 1 30 30 H 1.08998 * 109.47473 * 29.99945 * 5 4 2 31 31 H 1.08998 * 109.47455 * 150.00105 * 5 4 2 32 32 H 0.96996 * 119.99906 * 179.97438 * 9 8 6 33 33 H 1.09009 * 109.46836 * 58.77644 * 16 14 4 34 34 H 1.08999 * 109.47008 * 298.77795 * 16 14 4 35 35 H 1.08996 * 110.56701 * 61.44417 * 18 17 16 36 36 H 1.08999 * 110.68939 * 298.65389 * 18 17 16 37 37 H 1.09003 * 110.51706 * 118.63368 * 19 18 17 38 38 H 1.09001 * 110.51798 * 241.22462 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8462 -1.8917 1.0618 6 6 1.9609 -3.1108 1.0270 7 1 0.8887 -3.0017 1.0982 8 6 2.5195 -4.3654 0.9052 9 7 3.8252 -4.4982 0.8189 10 14 1.4223 -5.8765 0.8627 11 1 1.0493 -6.1781 -0.5427 12 1 2.1511 -7.0340 1.4408 13 1 0.1939 -5.6186 1.6563 14 6 1.7059 -0.2209 2.4202 15 8 0.9429 0.7148 2.5341 16 6 2.3047 -0.8586 3.6474 17 7 1.8351 -0.1535 4.8426 18 6 0.6254 -0.4845 5.6110 19 6 0.6135 0.5595 6.7443 20 8 1.8054 1.3615 6.5017 21 6 2.4374 0.8984 5.4138 22 8 3.4636 1.3883 4.9853 23 1 -0.3634 0.6127 0.8250 24 1 -0.3633 0.4080 -0.9432 25 1 -0.3633 -1.0208 0.1182 26 1 1.8933 -0.5138 -0.8900 27 1 3.1244 1.4444 0.1096 28 1 1.7688 1.9238 -0.9396 29 1 1.5900 1.9870 0.8302 30 1 3.4222 -1.8346 0.1382 31 1 3.5265 -1.9610 1.9106 32 1 4.2183 -5.3809 0.7335 33 1 3.3918 -0.7992 3.5940 34 1 2.0000 -1.9039 3.6990 35 1 0.6952 -1.4926 6.0197 36 1 -0.2647 -0.3853 4.9897 37 1 -0.2821 1.1780 6.6845 38 1 0.6739 0.0693 7.7160 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000874263112.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:16 Heat of formation + Delta-G solvation = -102.121479 kcal Electronic energy + Delta-G solvation = -21908.021134 eV Core-core repulsion = 18558.318651 eV Total energy + Delta-G solvation = -3349.702483 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.32682 -39.32138 -36.91361 -35.73360 -34.84809 -33.23439 -31.72855 -29.97371 -27.61365 -26.88354 -26.61316 -23.58062 -23.02837 -22.11923 -20.68603 -18.41647 -17.25047 -17.00891 -16.76837 -16.47323 -15.98063 -15.34311 -14.83752 -14.48707 -14.18037 -13.94527 -13.80853 -13.65252 -13.00172 -12.83326 -12.58304 -12.34080 -12.27514 -11.87522 -11.80821 -11.52912 -11.31510 -11.01871 -10.95556 -10.66442 -10.59156 -10.45122 -10.37443 -10.17061 -9.78848 -9.37355 -8.67976 -8.40904 -7.75997 -6.25913 -4.34809 2.54413 2.98655 3.16230 3.23818 3.24824 3.32683 3.57568 3.94927 4.22458 4.26398 4.68276 4.85268 5.06529 5.19878 5.22505 5.40152 5.53334 5.61070 5.69787 5.82117 5.85497 5.97603 6.07315 6.19046 6.35244 6.44583 6.46233 6.74283 6.75364 6.81727 7.11616 7.52404 7.52756 7.69221 7.96650 8.22099 8.30729 8.71412 8.95082 9.34054 10.80409 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.016299 B = 0.006621 C = 0.005500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.473191 B = 4227.872933 C = 5089.985088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.161 4.161 2 C 0.149 3.851 3 C -0.165 4.165 4 N -0.589 5.589 5 C 0.233 3.767 6 C -0.541 4.541 7 H 0.062 0.938 8 C 0.066 3.934 9 N -0.889 5.889 10 Si 0.897 3.103 11 H -0.279 1.279 12 H -0.285 1.285 13 H -0.273 1.273 14 C 0.503 3.497 15 O -0.561 6.561 16 C 0.131 3.869 17 N -0.608 5.608 18 C 0.068 3.932 19 C 0.044 3.956 20 O -0.332 6.332 21 C 0.647 3.353 22 O -0.524 6.524 23 H 0.071 0.929 24 H 0.049 0.951 25 H 0.056 0.944 26 H 0.084 0.916 27 H 0.051 0.949 28 H 0.055 0.945 29 H 0.070 0.930 30 H 0.038 0.962 31 H 0.038 0.962 32 H 0.266 0.734 33 H 0.114 0.886 34 H 0.125 0.875 35 H 0.092 0.908 36 H 0.093 0.907 37 H 0.102 0.898 38 H 0.103 0.897 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.713 4.675 6.690 10.568 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C 0.046 3.954 3 C -0.223 4.223 4 N -0.321 5.321 5 C 0.114 3.886 6 C -0.580 4.580 7 H 0.080 0.920 8 C -0.138 4.138 9 N -0.527 5.527 10 Si 0.724 3.276 11 H -0.205 1.205 12 H -0.210 1.210 13 H -0.198 1.198 14 C 0.289 3.711 15 O -0.442 6.442 16 C 0.007 3.993 17 N -0.355 5.355 18 C -0.056 4.056 19 C -0.031 4.031 20 O -0.243 6.243 21 C 0.401 3.599 22 O -0.408 6.408 23 H 0.090 0.910 24 H 0.068 0.932 25 H 0.075 0.925 26 H 0.102 0.898 27 H 0.070 0.930 28 H 0.074 0.926 29 H 0.089 0.911 30 H 0.056 0.944 31 H 0.056 0.944 32 H 0.076 0.924 33 H 0.132 0.868 34 H 0.143 0.857 35 H 0.110 0.890 36 H 0.112 0.888 37 H 0.121 0.879 38 H 0.121 0.879 Dipole moment (debyes) X Y Z Total from point charges -6.330 5.445 6.631 10.662 hybrid contribution -0.645 -1.282 -0.260 1.459 sum -6.976 4.163 6.371 10.324 Atomic orbital electron populations 1.22156 0.95644 1.02457 1.01690 1.20839 0.94237 0.92270 0.88095 1.22178 1.01062 0.96913 1.02105 1.48316 1.51193 1.28527 1.04045 1.19517 0.90048 0.80341 0.98737 1.21497 0.93766 0.90678 1.52031 0.91980 1.24959 0.95045 0.99092 0.94684 1.69925 1.09730 1.24135 1.48865 0.86518 0.80449 0.82149 0.78483 1.20481 1.21040 1.19813 1.20726 0.81657 0.83486 0.85194 1.90542 1.36895 1.29948 1.86766 1.21276 1.01040 0.96634 0.80345 1.47534 1.26233 1.32917 1.28794 1.22784 0.90043 0.99693 0.93066 1.24222 0.87259 0.92238 0.99419 1.87326 1.38613 1.54196 1.44171 1.18446 0.83236 0.79431 0.78785 1.91023 1.22727 1.62286 1.64806 0.90985 0.93166 0.92454 0.89806 0.92985 0.92644 0.91107 0.94410 0.94426 0.92393 0.86829 0.85720 0.88973 0.88829 0.87936 0.87894 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.80 9.01 37.16 0.33 -2.47 16 2 C 0.15 2.75 3.28 -67.93 -0.22 2.53 16 3 C -0.16 -2.80 9.01 37.16 0.33 -2.47 16 4 N -0.59 -12.02 2.41 -167.47 -0.40 -12.42 16 5 C 0.23 5.29 4.98 -5.19 -0.03 5.26 16 6 C -0.54 -13.25 9.39 -34.44 -0.32 -13.57 16 7 H 0.06 1.54 7.81 -52.49 -0.41 1.13 16 8 C 0.07 1.65 5.46 -17.82 -0.10 1.56 16 9 N -0.89 -23.58 13.29 55.43 0.74 -22.84 16 10 Si 0.90 19.59 29.54 -169.99 -5.02 14.57 16 11 H -0.28 -6.13 7.11 56.52 0.40 -5.73 16 12 H -0.28 -6.21 7.11 56.52 0.40 -5.81 16 13 H -0.27 -5.88 7.11 56.52 0.40 -5.48 16 14 C 0.50 10.13 7.15 -10.98 -0.08 10.05 16 15 O -0.56 -12.01 12.82 5.56 0.07 -11.94 16 16 C 0.13 2.34 4.96 -5.19 -0.03 2.31 16 17 N -0.61 -9.91 2.45 -180.13 -0.44 -10.36 16 18 C 0.07 0.76 7.70 -3.15 -0.02 0.74 16 19 C 0.04 0.42 8.22 37.73 0.31 0.73 16 20 O -0.33 -5.12 11.11 -38.60 -0.43 -5.55 16 21 C 0.65 11.96 8.85 53.71 0.48 12.43 16 22 O -0.52 -11.71 17.54 -19.10 -0.34 -12.05 16 23 H 0.07 1.34 6.27 -51.93 -0.33 1.02 16 24 H 0.05 0.74 8.14 -51.93 -0.42 0.32 16 25 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 26 H 0.08 1.53 7.79 -51.93 -0.40 1.12 16 27 H 0.05 0.90 8.14 -51.93 -0.42 0.47 16 28 H 0.05 0.80 8.14 -51.93 -0.42 0.37 16 29 H 0.07 1.34 6.47 -51.93 -0.34 1.00 16 30 H 0.04 0.91 7.91 -51.93 -0.41 0.50 16 31 H 0.04 0.87 6.41 -51.93 -0.33 0.54 16 32 H 0.27 6.75 8.31 -40.82 -0.34 6.41 16 33 H 0.11 2.09 7.31 -51.92 -0.38 1.71 16 34 H 0.12 2.12 8.07 -51.93 -0.42 1.70 16 35 H 0.09 0.81 8.14 -51.93 -0.42 0.38 16 36 H 0.09 1.05 8.14 -51.93 -0.42 0.63 16 37 H 0.10 0.77 8.14 -51.93 -0.42 0.35 16 38 H 0.10 0.65 8.14 -51.93 -0.42 0.23 16 LS Contribution 319.98 15.07 4.82 4.82 Total: -1.00 -31.28 319.98 -5.88 -37.16 By element: Atomic # 1 Polarization: 7.03 SS G_CDS: -5.54 Total: 1.49 kcal Atomic # 6 Polarization: 16.44 SS G_CDS: 0.66 Total: 17.10 kcal Atomic # 7 Polarization: -45.51 SS G_CDS: -0.11 Total: -45.62 kcal Atomic # 8 Polarization: -28.84 SS G_CDS: -0.69 Total: -29.53 kcal Atomic # 14 Polarization: 19.59 SS G_CDS: -5.02 Total: 14.57 kcal Total LS contribution 4.82 Total: 4.82 kcal Total: -31.28 -5.88 -37.16 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874263112.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -64.961 kcal (2) G-P(sol) polarization free energy of solvation -31.282 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.244 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.160 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.121 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds