Wall clock time and date at job start Mon Mar 30 2020 01:27:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.53002 * 109.46907 * 2 1 4 4 N 1.46500 * 109.47098 * 120.00099 * 2 1 3 5 5 C 1.46495 * 119.99989 * 119.20896 * 4 2 1 6 6 C 1.50703 * 109.47337 * 270.00263 * 5 4 2 7 7 H 1.08001 * 119.99671 * 359.97438 * 6 5 4 8 8 C 1.37874 * 120.00421 * 180.02562 * 6 5 4 9 9 N 1.31523 * 119.99890 * 359.97438 * 8 6 5 10 10 Si 1.86797 * 120.00563 * 179.97438 * 8 6 5 11 11 H 1.48498 * 109.47200 * 89.99616 * 10 8 6 12 12 H 1.48500 * 109.47562 * 210.00158 * 10 8 6 13 13 H 1.48501 * 109.46788 * 330.00001 * 10 8 6 14 14 C 1.34774 * 119.99753 * 299.20944 * 4 2 1 15 15 O 1.21274 * 120.00582 * 5.30990 * 14 4 2 16 16 C 1.50707 * 119.99892 * 185.30587 * 14 4 2 17 17 N 1.46496 * 109.47206 * 178.77641 * 16 14 4 18 18 C 1.47086 * 125.55978 * 90.00384 * 17 16 14 19 19 C 1.54095 * 103.77680 * 180.02562 * 18 17 16 20 20 O 1.45695 * 104.13039 * 359.92853 * 19 18 17 21 21 C 1.34004 * 125.55700 * 270.02621 * 17 16 14 22 22 O 1.21512 * 123.07558 * 0.02562 * 21 17 16 23 23 H 1.08996 * 109.47317 * 306.60035 * 1 2 3 24 24 H 1.08999 * 109.47211 * 66.60671 * 1 2 3 25 25 H 1.09000 * 109.47123 * 186.60241 * 1 2 3 26 26 H 1.09000 * 109.46951 * 240.00161 * 2 1 3 27 27 H 1.09001 * 109.46564 * 173.87814 * 3 2 1 28 28 H 1.08991 * 109.47436 * 293.88094 * 3 2 1 29 29 H 1.09000 * 109.47058 * 53.88576 * 3 2 1 30 30 H 1.08998 * 109.47473 * 29.99945 * 5 4 2 31 31 H 1.08998 * 109.47455 * 150.00105 * 5 4 2 32 32 H 0.96996 * 119.99906 * 179.97438 * 9 8 6 33 33 H 1.09009 * 109.46836 * 58.77644 * 16 14 4 34 34 H 1.08999 * 109.47008 * 298.77795 * 16 14 4 35 35 H 1.08996 * 110.56701 * 61.44417 * 18 17 16 36 36 H 1.08999 * 110.68939 * 298.65389 * 18 17 16 37 37 H 1.09003 * 110.51706 * 118.63368 * 19 18 17 38 38 H 1.09001 * 110.51798 * 241.22462 * 19 18 17 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 7 2.0183 -0.6906 1.1962 5 6 2.8462 -1.8917 1.0618 6 6 1.9609 -3.1108 1.0270 7 1 0.8887 -3.0017 1.0982 8 6 2.5195 -4.3654 0.9052 9 7 3.8252 -4.4982 0.8189 10 14 1.4223 -5.8765 0.8627 11 1 1.0493 -6.1781 -0.5427 12 1 2.1511 -7.0340 1.4408 13 1 0.1939 -5.6186 1.6563 14 6 1.7059 -0.2209 2.4202 15 8 0.9429 0.7148 2.5341 16 6 2.3047 -0.8586 3.6474 17 7 1.8351 -0.1535 4.8426 18 6 0.6254 -0.4845 5.6110 19 6 0.6135 0.5595 6.7443 20 8 1.8054 1.3615 6.5017 21 6 2.4374 0.8984 5.4138 22 8 3.4636 1.3883 4.9853 23 1 -0.3634 0.6127 0.8250 24 1 -0.3633 0.4080 -0.9432 25 1 -0.3633 -1.0208 0.1182 26 1 1.8933 -0.5138 -0.8900 27 1 3.1244 1.4444 0.1096 28 1 1.7688 1.9238 -0.9396 29 1 1.5900 1.9870 0.8302 30 1 3.4222 -1.8346 0.1382 31 1 3.5265 -1.9610 1.9106 32 1 4.2183 -5.3809 0.7335 33 1 3.3918 -0.7992 3.5940 34 1 2.0000 -1.9039 3.6990 35 1 0.6952 -1.4926 6.0197 36 1 -0.2647 -0.3853 4.9897 37 1 -0.2821 1.1780 6.6845 38 1 0.6739 0.0693 7.7160 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000874263112.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:27:16 Heat of formation + Delta-G solvation = -121.888151 kcal Electronic energy + Delta-G solvation = -21908.878282 eV Core-core repulsion = 18558.318651 eV Total energy + Delta-G solvation = -3350.559631 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.46 seconds Orbital eigenvalues (eV) -42.56394 -40.89610 -38.32360 -37.24598 -36.28358 -34.99965 -33.37098 -31.08011 -29.16001 -28.51266 -28.03406 -24.88537 -24.53072 -23.60166 -22.05037 -19.92759 -18.68521 -18.47867 -18.23440 -17.81603 -17.52763 -16.84653 -16.36989 -16.15937 -15.65204 -15.19737 -15.04871 -14.88563 -14.45726 -14.39608 -14.01048 -13.76111 -13.60505 -13.39642 -13.22379 -13.08142 -12.75616 -12.73026 -12.62458 -12.18403 -12.10173 -11.86593 -11.83514 -11.65781 -11.61277 -10.81143 -10.59435 -9.82832 -9.44627 -8.18108 -6.33699 1.25777 1.44422 1.47238 1.55713 1.61095 1.70989 2.30665 2.46051 2.64563 3.12390 3.37372 3.63444 3.69437 3.99415 4.12698 4.24983 4.36028 4.40283 4.41356 4.49934 4.70811 4.76134 4.76877 4.80647 4.92929 5.00302 5.02118 5.11597 5.23145 5.30989 5.41534 5.70119 5.91837 6.05998 6.29786 6.57339 6.81594 6.87483 7.29405 7.41696 8.87396 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.016299 B = 0.006621 C = 0.005500 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1717.473191 B = 4227.872933 C = 5089.985088 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.138 3.862 3 C -0.153 4.153 4 N -0.593 5.593 5 C 0.247 3.753 6 C -0.542 4.542 7 H 0.059 0.941 8 C 0.023 3.977 9 N -0.921 5.921 10 Si 0.957 3.043 11 H -0.279 1.279 12 H -0.283 1.283 13 H -0.265 1.265 14 C 0.499 3.501 15 O -0.574 6.574 16 C 0.136 3.864 17 N -0.609 5.609 18 C 0.061 3.939 19 C 0.043 3.957 20 O -0.343 6.343 21 C 0.642 3.358 22 O -0.578 6.578 23 H 0.058 0.942 24 H 0.079 0.921 25 H 0.043 0.957 26 H 0.085 0.915 27 H 0.043 0.957 28 H 0.086 0.914 29 H 0.050 0.950 30 H 0.019 0.981 31 H 0.031 0.969 32 H 0.267 0.733 33 H 0.101 0.899 34 H 0.135 0.865 35 H 0.123 0.877 36 H 0.095 0.905 37 H 0.126 0.874 38 H 0.144 0.856 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.654 4.034 7.314 12.028 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C 0.035 3.965 3 C -0.211 4.211 4 N -0.324 5.324 5 C 0.126 3.874 6 C -0.581 4.581 7 H 0.077 0.923 8 C -0.178 4.178 9 N -0.560 5.560 10 Si 0.783 3.217 11 H -0.205 1.205 12 H -0.209 1.209 13 H -0.189 1.189 14 C 0.286 3.714 15 O -0.455 6.455 16 C 0.012 3.988 17 N -0.355 5.355 18 C -0.061 4.061 19 C -0.031 4.031 20 O -0.253 6.253 21 C 0.397 3.603 22 O -0.466 6.466 23 H 0.077 0.923 24 H 0.098 0.902 25 H 0.062 0.938 26 H 0.103 0.897 27 H 0.062 0.938 28 H 0.105 0.895 29 H 0.069 0.931 30 H 0.038 0.962 31 H 0.048 0.952 32 H 0.077 0.923 33 H 0.119 0.881 34 H 0.153 0.847 35 H 0.141 0.859 36 H 0.113 0.887 37 H 0.144 0.856 38 H 0.162 0.838 Dipole moment (debyes) X Y Z Total from point charges -8.330 4.805 7.281 12.062 hybrid contribution -0.108 -1.051 -0.438 1.144 sum -8.439 3.754 6.843 11.495 Atomic orbital electron populations 1.22033 0.94513 1.01472 1.02715 1.21088 0.95170 0.92850 0.87415 1.22070 1.00241 0.95899 1.02913 1.48332 1.51003 1.28074 1.05017 1.19200 0.89857 0.80927 0.97417 1.21650 0.93662 0.91324 1.51452 0.92293 1.25659 0.96065 1.01706 0.94374 1.70025 1.11248 1.24770 1.49940 0.85566 0.79003 0.78832 0.78345 1.20506 1.20904 1.18909 1.21079 0.81414 0.83301 0.85625 1.90529 1.37553 1.30450 1.86996 1.21124 1.00332 0.97016 0.80344 1.47607 1.27541 1.32092 1.28212 1.23182 0.87867 1.01982 0.93063 1.24751 0.85954 0.91799 1.00573 1.87294 1.40379 1.55058 1.42613 1.18643 0.82918 0.79457 0.79290 1.90964 1.25171 1.63944 1.66560 0.92345 0.90241 0.93767 0.89666 0.93797 0.89530 0.93088 0.96240 0.95154 0.92343 0.88052 0.84707 0.85858 0.88701 0.85566 0.83832 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.00 9.01 71.98 0.65 -4.35 16 2 C 0.14 5.01 3.28 44.99 0.15 5.16 16 3 C -0.15 -5.12 9.01 71.98 0.65 -4.47 16 4 N -0.59 -24.32 2.41 -802.15 -1.93 -26.25 16 5 C 0.25 11.34 4.98 85.63 0.43 11.76 16 6 C -0.54 -26.38 9.39 25.60 0.24 -26.14 16 7 H 0.06 2.87 7.81 -2.91 -0.02 2.85 16 8 C 0.02 1.12 5.46 84.65 0.46 1.58 16 9 N -0.92 -48.93 13.29 21.45 0.28 -48.64 16 10 Si 0.96 39.42 29.54 68.60 2.03 41.45 16 11 H -0.28 -11.47 7.11 99.48 0.71 -10.76 16 12 H -0.28 -11.56 7.11 99.48 0.71 -10.85 16 13 H -0.26 -10.46 7.11 99.48 0.71 -9.75 16 14 C 0.50 20.17 7.15 87.66 0.63 20.80 16 15 O -0.57 -24.55 12.82 -3.01 -0.04 -24.59 16 16 C 0.14 4.90 4.96 85.64 0.43 5.32 16 17 N -0.61 -19.43 2.45 -955.37 -2.34 -21.77 16 18 C 0.06 1.21 7.70 86.64 0.67 1.88 16 19 C 0.04 0.68 8.22 72.35 0.59 1.27 16 20 O -0.34 -10.13 11.11 -50.11 -0.56 -10.69 16 21 C 0.64 23.78 8.85 129.91 1.15 24.93 16 22 O -0.58 -26.72 17.54 19.63 0.34 -26.37 16 23 H 0.06 2.12 6.27 -2.39 -0.01 2.10 16 24 H 0.08 2.16 8.14 -2.39 -0.02 2.14 16 25 H 0.04 1.57 8.14 -2.39 -0.02 1.55 16 26 H 0.09 3.06 7.79 -2.39 -0.02 3.04 16 27 H 0.04 1.51 8.14 -2.39 -0.02 1.49 16 28 H 0.09 2.32 8.14 -2.39 -0.02 2.30 16 29 H 0.05 1.91 6.47 -2.39 -0.02 1.89 16 30 H 0.02 0.96 7.91 -2.39 -0.02 0.94 16 31 H 0.03 1.44 6.41 -2.39 -0.02 1.42 16 32 H 0.27 13.54 8.31 -92.71 -0.77 12.77 16 33 H 0.10 3.88 7.31 -2.38 -0.02 3.86 16 34 H 0.14 4.52 8.07 -2.39 -0.02 4.50 16 35 H 0.12 1.71 8.14 -2.39 -0.02 1.69 16 36 H 0.09 1.90 8.14 -2.39 -0.02 1.88 16 37 H 0.13 1.44 8.14 -2.39 -0.02 1.42 16 38 H 0.14 1.16 8.14 -2.39 -0.02 1.14 16 Total: -1.00 -68.39 319.98 4.88 -63.51 By element: Atomic # 1 Polarization: 14.56 SS G_CDS: 1.05 Total: 15.62 kcal Atomic # 6 Polarization: 31.71 SS G_CDS: 6.04 Total: 37.75 kcal Atomic # 7 Polarization: -92.68 SS G_CDS: -3.99 Total: -96.67 kcal Atomic # 8 Polarization: -61.40 SS G_CDS: -0.25 Total: -61.65 kcal Atomic # 14 Polarization: 39.42 SS G_CDS: 2.03 Total: 41.45 kcal Total: -68.39 4.88 -63.51 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000874263112.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -58.376 kcal (2) G-P(sol) polarization free energy of solvation -68.390 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -126.766 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.878 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -63.513 kcal (6) G-S(sol) free energy of system = (1) + (5) -121.888 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.46 seconds