Wall clock time and date at job start Mon Mar 30 2020 02:11:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.39361 * 2 1 4 4 C 1.54577 * 110.43853 * 237.57631 * 2 1 3 5 5 C 1.54490 * 102.14544 * 214.41060 * 4 2 1 6 6 H 1.09003 * 110.37179 * 256.51450 * 5 4 2 7 7 N 1.46496 * 110.37238 * 134.18026 * 5 4 2 8 8 C 1.34776 * 120.00353 * 154.99828 * 7 5 4 9 9 O 1.21582 * 119.99966 * 0.02562 * 8 7 5 10 10 N 1.34776 * 119.99824 * 180.02562 * 8 7 5 11 11 C 1.46502 * 119.99798 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47117 * 180.02562 * 11 10 8 13 13 C 1.53004 * 109.47143 * 179.97438 * 12 11 10 14 14 C 1.50705 * 109.46986 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00067 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99816 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00023 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00133 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47227 * 59.99584 * 18 16 14 20 20 H 1.48494 * 109.47315 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46869 * 300.00036 * 18 16 14 22 22 C 1.51329 * 104.82503 * 15.34364 * 5 4 2 23 23 O 1.20825 * 125.09701 * 182.33506 * 22 5 4 24 24 O 1.34072 * 109.80931 * 2.31637 * 22 5 4 25 25 H 1.08996 * 109.47531 * 182.42011 * 1 2 3 26 26 H 1.09002 * 109.47382 * 302.42810 * 1 2 3 27 27 H 1.09005 * 109.47172 * 62.42319 * 1 2 3 28 28 H 1.09002 * 110.86756 * 332.57398 * 4 2 1 29 29 H 1.09000 * 110.86482 * 96.25201 * 4 2 1 30 30 H 0.97010 * 119.99513 * 335.00352 * 7 5 4 31 31 H 0.96996 * 120.00187 * 0.02562 * 10 8 7 32 32 H 1.09004 * 109.46959 * 300.00000 * 11 10 8 33 33 H 1.08998 * 109.47495 * 60.00133 * 11 10 8 34 34 H 1.08999 * 109.47370 * 299.99657 * 12 11 10 35 35 H 1.09003 * 109.47386 * 59.99915 * 12 11 10 36 36 H 1.08995 * 109.47223 * 299.99501 * 13 12 11 37 37 H 1.08998 * 109.47305 * 59.99874 * 13 12 11 38 38 H 0.97003 * 120.00144 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0698 -0.7766 -1.2227 5 6 3.3509 -1.4271 -0.6548 6 1 4.2343 -0.8906 -1.0010 7 7 3.4233 -2.8370 -1.0459 8 6 4.6182 -3.4567 -1.1152 9 8 5.6360 -2.8456 -0.8527 10 7 4.6847 -4.7537 -1.4754 11 6 5.9835 -5.4274 -1.5503 12 6 5.7797 -6.8817 -1.9796 13 6 7.1361 -7.5851 -2.0583 14 6 6.9353 -9.0177 -2.4807 15 1 5.9398 -9.3892 -2.6740 16 6 8.0225 -9.8539 -2.6212 17 7 9.2348 -9.4014 -2.3863 18 14 7.7737 -11.6295 -3.1454 19 1 7.1190 -11.6652 -4.4778 20 1 9.0902 -12.3122 -3.2217 21 1 6.9139 -12.3227 -2.1526 22 6 3.2148 -1.3035 0.8473 23 8 4.0418 -1.6626 1.6516 24 8 2.0392 -0.7353 1.1518 25 1 -0.3634 -1.0267 0.0434 26 1 -0.3634 0.5511 0.8674 27 1 -0.3634 0.4758 -0.9110 28 1 1.3582 -1.5370 -1.5447 29 1 2.3093 -0.0963 -2.0399 30 1 2.6112 -3.3247 -1.2550 31 1 3.8728 -5.2411 -1.6852 32 1 6.6151 -4.9190 -2.2788 33 1 6.4635 -5.4009 -0.5720 34 1 5.1480 -7.3904 -1.2514 35 1 5.2999 -6.9079 -2.9580 36 1 7.7675 -7.0764 -2.7868 37 1 7.6163 -7.5589 -1.0802 38 1 9.9997 -9.9897 -2.4849 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892792770.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:35 Heat of formation + Delta-G solvation = -124.821442 kcal Electronic energy + Delta-G solvation = -20124.142624 eV Core-core repulsion = 16773.455796 eV Total energy + Delta-G solvation = -3350.686828 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.44 seconds Orbital eigenvalues (eV) -41.53865 -39.64455 -37.82150 -35.78104 -34.91128 -33.36407 -32.90437 -31.29685 -29.82565 -26.63544 -25.11464 -23.18717 -22.55195 -21.54300 -20.77037 -20.36426 -18.49374 -17.64113 -17.14722 -16.95642 -16.28575 -15.50652 -15.43381 -14.67215 -14.49551 -14.35671 -14.27349 -13.94727 -13.79670 -13.41578 -12.99302 -12.53715 -12.36740 -12.26394 -11.81488 -11.78097 -11.60905 -11.02612 -10.92292 -10.84756 -10.71764 -10.61572 -10.18551 -9.84937 -9.44205 -9.29267 -9.12763 -8.68349 -8.35734 -6.00350 -4.03638 1.70156 2.52138 2.93352 3.20048 3.32752 3.37594 3.39376 3.63886 3.74221 3.99575 4.23132 4.31125 4.45772 4.55681 4.72445 4.99094 5.14208 5.16013 5.29777 5.35195 5.51163 5.68961 5.81974 6.08592 6.19905 6.41225 6.50103 6.62908 6.71356 6.96293 7.02267 7.25630 7.64937 7.78089 7.98371 8.02310 8.38990 8.64822 9.02811 9.60318 11.10912 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.047611 B = 0.002700 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.954206 B =10366.992865 C =10594.498495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.079 3.921 3 H 0.100 0.900 4 C -0.159 4.159 5 C 0.109 3.891 6 H 0.132 0.868 7 N -0.734 5.734 8 C 0.700 3.300 9 O -0.578 6.578 10 N -0.737 5.737 11 C 0.134 3.866 12 C -0.120 4.120 13 C 0.024 3.976 14 C -0.523 4.523 15 H 0.055 0.945 16 C 0.057 3.943 17 N -0.894 5.894 18 Si 0.894 3.106 19 H -0.277 1.277 20 H -0.287 1.287 21 H -0.277 1.277 22 C 0.464 3.536 23 O -0.427 6.427 24 O -0.346 6.346 25 H 0.070 0.930 26 H 0.071 0.929 27 H 0.083 0.917 28 H 0.099 0.901 29 H 0.108 0.892 30 H 0.401 0.599 31 H 0.394 0.606 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.019 0.981 37 H 0.020 0.980 38 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.595 20.008 0.320 28.715 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.024 3.976 3 H 0.118 0.882 4 C -0.197 4.197 5 C 0.000 4.000 6 H 0.150 0.850 7 N -0.393 5.393 8 C 0.400 3.600 9 O -0.454 6.454 10 N -0.391 5.391 11 C 0.011 3.989 12 C -0.158 4.158 13 C -0.014 4.014 14 C -0.561 4.561 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.532 5.532 18 Si 0.722 3.278 19 H -0.203 1.203 20 H -0.213 1.213 21 H -0.203 1.203 22 C 0.299 3.701 23 O -0.306 6.306 24 O -0.263 6.263 25 H 0.089 0.911 26 H 0.090 0.910 27 H 0.102 0.898 28 H 0.117 0.883 29 H 0.127 0.873 30 H 0.236 0.764 31 H 0.228 0.772 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.102 20.316 1.168 27.910 hybrid contribution -0.794 -1.482 -0.571 1.776 sum -19.896 18.833 0.597 27.403 Atomic orbital electron populations 1.21916 0.91485 1.03905 1.03573 1.23693 0.96538 0.95466 0.81932 0.88210 1.23382 0.96244 1.01336 0.98721 1.21960 1.01586 0.84449 0.91983 0.85023 1.44856 1.08561 1.10470 1.75428 1.16002 0.83406 0.82255 0.78317 1.90958 1.33399 1.65374 1.55658 1.45351 1.11328 1.09362 1.73078 1.21564 0.82209 0.93315 1.01800 1.21893 1.02268 0.91616 1.00022 1.19026 0.90059 0.94619 0.97666 1.21163 0.92930 0.95730 1.46320 0.92716 1.25032 0.95257 0.98685 0.95504 1.69957 0.98117 1.36040 1.49127 0.86636 0.77258 0.84840 0.79113 1.20266 1.21273 1.20257 1.23664 0.79537 0.75085 0.91777 1.90779 1.38716 1.44046 1.57039 1.87099 1.35445 1.63251 1.40537 0.91145 0.90984 0.89826 0.88289 0.87309 0.76434 0.77245 0.91790 0.91762 0.92736 0.92749 0.96223 0.96198 0.92855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.45 9.56 37.16 0.36 -0.09 16 2 C 0.08 0.38 4.18 -25.90 -0.11 0.27 16 3 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 4 C -0.16 -0.66 6.45 -25.12 -0.16 -0.82 16 5 C 0.11 1.02 3.33 -67.99 -0.23 0.80 16 6 H 0.13 1.37 7.56 -51.93 -0.39 0.97 16 7 N -0.73 -7.67 5.13 -58.74 -0.30 -7.98 16 8 C 0.70 10.85 8.56 -86.92 -0.74 10.11 16 9 O -0.58 -11.64 15.99 5.29 0.08 -11.56 16 10 N -0.74 -10.76 5.56 -65.23 -0.36 -11.12 16 11 C 0.13 2.43 5.67 -4.04 -0.02 2.41 16 12 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 13 C 0.02 0.61 4.97 -27.88 -0.14 0.48 16 14 C -0.52 -14.68 9.11 -34.44 -0.31 -15.00 16 15 H 0.05 1.47 7.74 -52.49 -0.41 1.06 16 16 C 0.06 1.63 5.46 -17.82 -0.10 1.53 16 17 N -0.89 -27.03 13.29 55.43 0.74 -26.29 16 18 Si 0.89 21.59 29.54 -169.99 -5.02 16.56 16 19 H -0.28 -6.53 7.11 56.52 0.40 -6.13 16 20 H -0.29 -6.88 7.11 56.52 0.40 -6.48 16 21 H -0.28 -6.56 7.11 56.52 0.40 -6.16 16 22 C 0.46 5.88 8.21 36.31 0.30 6.17 16 23 O -0.43 -7.64 18.00 -18.41 -0.33 -7.97 16 24 O -0.35 -3.47 10.76 -38.50 -0.41 -3.88 16 25 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.07 0.23 8.14 -51.93 -0.42 -0.19 16 27 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 28 H 0.10 0.27 7.50 -51.93 -0.39 -0.12 16 29 H 0.11 0.23 8.14 -51.93 -0.42 -0.20 16 30 H 0.40 2.77 8.37 -40.82 -0.34 2.42 16 31 H 0.39 4.44 8.49 -40.82 -0.35 4.09 16 32 H 0.06 1.22 8.14 -51.93 -0.42 0.79 16 33 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 34 H 0.05 1.04 8.14 -51.93 -0.42 0.61 16 35 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 36 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 37 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.26 7.48 8.31 -40.82 -0.34 7.14 16 LS Contribution 327.88 15.07 4.94 4.94 Total: -1.00 -37.47 327.88 -7.63 -45.10 By element: Atomic # 1 Polarization: 4.50 SS G_CDS: -5.66 Total: -1.16 kcal Atomic # 6 Polarization: 4.66 SS G_CDS: -1.30 Total: 3.36 kcal Atomic # 7 Polarization: -45.46 SS G_CDS: 0.07 Total: -45.39 kcal Atomic # 8 Polarization: -22.75 SS G_CDS: -0.66 Total: -23.41 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.56 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -37.47 -7.63 -45.10 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892792770.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.725 kcal (2) G-P(sol) polarization free energy of solvation -37.466 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.191 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.630 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.097 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.821 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.44 seconds