Wall clock time and date at job start Mon Mar 30 2020 02:11:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 H 1.08998 * 110.39361 * 2 1 4 4 C 1.54577 * 110.43853 * 237.57631 * 2 1 3 5 5 C 1.54490 * 102.14544 * 214.41060 * 4 2 1 6 6 H 1.09003 * 110.37179 * 256.51450 * 5 4 2 7 7 N 1.46496 * 110.37238 * 134.18026 * 5 4 2 8 8 C 1.34776 * 120.00353 * 154.99828 * 7 5 4 9 9 O 1.21582 * 119.99966 * 0.02562 * 8 7 5 10 10 N 1.34776 * 119.99824 * 180.02562 * 8 7 5 11 11 C 1.46502 * 119.99798 * 180.02562 * 10 8 7 12 12 C 1.52995 * 109.47117 * 180.02562 * 11 10 8 13 13 C 1.53004 * 109.47143 * 179.97438 * 12 11 10 14 14 C 1.50705 * 109.46986 * 179.97438 * 13 12 11 15 15 H 1.08000 * 120.00067 * 0.02562 * 14 13 12 16 16 C 1.37879 * 119.99816 * 179.97438 * 14 13 12 17 17 N 1.31513 * 120.00023 * 0.02562 * 16 14 13 18 18 Si 1.86794 * 120.00133 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47227 * 59.99584 * 18 16 14 20 20 H 1.48494 * 109.47315 * 180.02562 * 18 16 14 21 21 H 1.48503 * 109.46869 * 300.00036 * 18 16 14 22 22 C 1.51329 * 104.82503 * 15.34364 * 5 4 2 23 23 O 1.20825 * 125.09701 * 182.33506 * 22 5 4 24 24 O 1.34072 * 109.80931 * 2.31637 * 22 5 4 25 25 H 1.08996 * 109.47531 * 182.42011 * 1 2 3 26 26 H 1.09002 * 109.47382 * 302.42810 * 1 2 3 27 27 H 1.09005 * 109.47172 * 62.42319 * 1 2 3 28 28 H 1.09002 * 110.86756 * 332.57398 * 4 2 1 29 29 H 1.09000 * 110.86482 * 96.25201 * 4 2 1 30 30 H 0.97010 * 119.99513 * 335.00352 * 7 5 4 31 31 H 0.96996 * 120.00187 * 0.02562 * 10 8 7 32 32 H 1.09004 * 109.46959 * 300.00000 * 11 10 8 33 33 H 1.08998 * 109.47495 * 60.00133 * 11 10 8 34 34 H 1.08999 * 109.47370 * 299.99657 * 12 11 10 35 35 H 1.09003 * 109.47386 * 59.99915 * 12 11 10 36 36 H 1.08995 * 109.47223 * 299.99501 * 13 12 11 37 37 H 1.08998 * 109.47305 * 59.99874 * 13 12 11 38 38 H 0.97003 * 120.00144 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9098 1.0217 0.0000 4 6 2.0698 -0.7766 -1.2227 5 6 3.3509 -1.4271 -0.6548 6 1 4.2343 -0.8906 -1.0010 7 7 3.4233 -2.8370 -1.0459 8 6 4.6182 -3.4567 -1.1152 9 8 5.6360 -2.8456 -0.8527 10 7 4.6847 -4.7537 -1.4754 11 6 5.9835 -5.4274 -1.5503 12 6 5.7797 -6.8817 -1.9796 13 6 7.1361 -7.5851 -2.0583 14 6 6.9353 -9.0177 -2.4807 15 1 5.9398 -9.3892 -2.6740 16 6 8.0225 -9.8539 -2.6212 17 7 9.2348 -9.4014 -2.3863 18 14 7.7737 -11.6295 -3.1454 19 1 7.1190 -11.6652 -4.4778 20 1 9.0902 -12.3122 -3.2217 21 1 6.9139 -12.3227 -2.1526 22 6 3.2148 -1.3035 0.8473 23 8 4.0418 -1.6626 1.6516 24 8 2.0392 -0.7353 1.1518 25 1 -0.3634 -1.0267 0.0434 26 1 -0.3634 0.5511 0.8674 27 1 -0.3634 0.4758 -0.9110 28 1 1.3582 -1.5370 -1.5447 29 1 2.3093 -0.0963 -2.0399 30 1 2.6112 -3.3247 -1.2550 31 1 3.8728 -5.2411 -1.6852 32 1 6.6151 -4.9190 -2.2788 33 1 6.4635 -5.4009 -0.5720 34 1 5.1480 -7.3904 -1.2514 35 1 5.2999 -6.9079 -2.9580 36 1 7.7675 -7.0764 -2.7868 37 1 7.6163 -7.5589 -1.0802 38 1 9.9997 -9.9897 -2.4849 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892792770.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:34 Heat of formation + Delta-G solvation = -153.334608 kcal Electronic energy + Delta-G solvation = -20125.379048 eV Core-core repulsion = 16773.455796 eV Total energy + Delta-G solvation = -3351.923251 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.36310 -40.83677 -38.81901 -37.16674 -36.07555 -35.21368 -33.63275 -32.89894 -30.68121 -28.38502 -25.81479 -24.93112 -23.09313 -22.64276 -22.31239 -21.51788 -19.60870 -18.58552 -18.38750 -17.99221 -17.84361 -16.80295 -16.63507 -16.36757 -15.72849 -15.51103 -15.36911 -14.98351 -14.75848 -14.26743 -13.80950 -13.72893 -13.57306 -13.43028 -13.02069 -12.90258 -12.71662 -12.55038 -12.40496 -12.09939 -11.92402 -11.72844 -11.66305 -11.52028 -11.33453 -11.17182 -10.54293 -10.43575 -9.89858 -8.18664 -6.30509 0.73765 1.41974 1.45449 1.53098 1.58156 1.95251 2.20859 2.42656 2.90190 3.12898 3.14938 3.24916 3.67807 3.88598 4.13637 4.19284 4.22560 4.25142 4.55389 4.70631 4.81018 4.90978 4.95246 4.96774 5.01858 5.16831 5.22754 5.32427 5.43139 5.52893 5.70828 5.71291 5.84606 5.87606 6.22658 6.31447 6.86660 6.99066 7.39022 7.47008 8.93393 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.047611 B = 0.002700 C = 0.002642 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 587.954206 B =10366.992865 C =10594.498495 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.070 3.930 3 H 0.119 0.881 4 C -0.138 4.138 5 C 0.106 3.894 6 H 0.121 0.879 7 N -0.713 5.713 8 C 0.696 3.304 9 O -0.629 6.629 10 N -0.725 5.725 11 C 0.148 3.852 12 C -0.099 4.099 13 C 0.023 3.977 14 C -0.541 4.541 15 H 0.068 0.932 16 C -0.005 4.005 17 N -0.936 5.936 18 Si 0.969 3.031 19 H -0.263 1.263 20 H -0.287 1.287 21 H -0.266 1.266 22 C 0.463 3.537 23 O -0.496 6.496 24 O -0.360 6.360 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.113 0.887 28 H 0.123 0.877 29 H 0.141 0.859 30 H 0.421 0.579 31 H 0.414 0.586 32 H 0.051 0.949 33 H 0.040 0.960 34 H 0.066 0.934 35 H 0.073 0.927 36 H -0.006 1.006 37 H -0.011 1.011 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.024 20.064 -1.458 31.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.016 3.984 3 H 0.137 0.863 4 C -0.176 4.176 5 C -0.002 4.002 6 H 0.139 0.861 7 N -0.373 5.373 8 C 0.396 3.604 9 O -0.509 6.509 10 N -0.381 5.381 11 C 0.024 3.976 12 C -0.137 4.137 13 C -0.015 4.015 14 C -0.579 4.579 15 H 0.086 0.914 16 C -0.203 4.203 17 N -0.576 5.576 18 Si 0.793 3.207 19 H -0.188 1.188 20 H -0.213 1.213 21 H -0.191 1.191 22 C 0.302 3.698 23 O -0.380 6.380 24 O -0.277 6.277 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.131 0.869 28 H 0.141 0.859 29 H 0.159 0.841 30 H 0.260 0.740 31 H 0.251 0.749 32 H 0.070 0.930 33 H 0.059 0.941 34 H 0.085 0.915 35 H 0.092 0.908 36 H 0.012 0.988 37 H 0.007 0.993 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -22.665 20.389 -0.643 30.493 hybrid contribution 0.195 -1.386 0.003 1.399 sum -22.470 19.003 -0.639 29.435 Atomic orbital electron populations 1.21973 0.89621 1.04090 1.04882 1.24217 0.97900 0.95875 0.80431 0.86323 1.23484 0.93370 1.01862 0.98836 1.22161 1.04194 0.83792 0.90058 0.86148 1.44635 1.07693 1.11050 1.73886 1.16216 0.84146 0.82165 0.77871 1.90931 1.35722 1.66516 1.57740 1.44964 1.10797 1.09313 1.72989 1.21110 0.83695 0.92747 1.00066 1.21584 0.98898 0.91719 1.01501 1.18947 0.92796 0.94707 0.95046 1.21655 0.93594 0.96764 1.45895 0.91369 1.26056 0.94878 1.03844 0.95485 1.70115 0.99164 1.37914 1.50447 0.85444 0.77299 0.78646 0.79308 1.18801 1.21259 1.19099 1.24223 0.79261 0.73627 0.92682 1.90736 1.41258 1.47033 1.58998 1.87079 1.34071 1.63034 1.43468 0.91365 0.91487 0.86855 0.85879 0.84077 0.73955 0.74885 0.93019 0.94104 0.91500 0.90828 0.98797 0.99262 0.92822 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.34 9.56 71.98 0.69 0.35 16 2 C 0.07 0.46 4.18 31.13 0.13 0.59 16 3 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 4 C -0.14 -0.59 6.45 31.64 0.20 -0.39 16 5 C 0.11 1.85 3.33 44.95 0.15 1.99 16 6 H 0.12 2.44 7.56 -2.39 -0.02 2.43 16 7 N -0.71 -13.68 5.13 -458.01 -2.35 -16.03 16 8 C 0.70 21.32 8.56 179.05 1.53 22.86 16 9 O -0.63 -26.15 15.99 -3.97 -0.06 -26.21 16 10 N -0.72 -20.45 5.56 -478.54 -2.66 -23.11 16 11 C 0.15 5.46 5.67 86.38 0.49 5.95 16 12 C -0.10 -3.84 5.27 30.59 0.16 -3.68 16 13 C 0.02 1.20 4.97 29.85 0.15 1.35 16 14 C -0.54 -30.36 9.11 25.60 0.23 -30.12 16 15 H 0.07 3.56 7.74 -2.91 -0.02 3.53 16 16 C -0.01 -0.29 5.46 84.66 0.46 0.17 16 17 N -0.94 -57.90 13.29 21.45 0.28 -57.61 16 18 Si 0.97 43.98 29.54 68.60 2.03 46.01 16 19 H -0.26 -11.30 7.11 99.48 0.71 -10.60 16 20 H -0.29 -12.91 7.11 99.48 0.71 -12.20 16 21 H -0.27 -11.54 7.11 99.48 0.71 -10.84 16 22 C 0.46 11.84 8.21 71.44 0.59 12.43 16 23 O -0.50 -18.81 18.00 21.64 0.39 -18.42 16 24 O -0.36 -6.87 10.76 -50.24 -0.54 -7.41 16 25 H 0.07 0.22 8.14 -2.39 -0.02 0.20 16 26 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 27 H 0.11 -0.35 8.14 -2.38 -0.02 -0.37 16 28 H 0.12 0.01 7.50 -2.39 -0.02 -0.01 16 29 H 0.14 -0.16 8.14 -2.39 -0.02 -0.18 16 30 H 0.42 4.47 8.37 -92.70 -0.78 3.70 16 31 H 0.41 8.28 8.49 -92.71 -0.79 7.49 16 32 H 0.05 2.03 8.14 -2.38 -0.02 2.01 16 33 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 34 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 35 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 36 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 37 H -0.01 -0.64 8.14 -2.39 -0.02 -0.66 16 38 H 0.26 15.33 8.31 -92.71 -0.77 14.56 16 Total: -1.00 -86.76 327.88 1.39 -85.37 By element: Atomic # 1 Polarization: 6.42 SS G_CDS: -0.48 Total: 5.93 kcal Atomic # 6 Polarization: 6.70 SS G_CDS: 4.79 Total: 11.49 kcal Atomic # 7 Polarization: -92.03 SS G_CDS: -4.72 Total: -96.75 kcal Atomic # 8 Polarization: -51.83 SS G_CDS: -0.21 Total: -52.04 kcal Atomic # 14 Polarization: 43.98 SS G_CDS: 2.03 Total: 46.01 kcal Total: -86.76 1.39 -85.37 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892792770.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.969 kcal (2) G-P(sol) polarization free energy of solvation -86.755 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.724 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.390 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.366 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.335 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds