Wall clock time and date at job start Mon Mar 30 2020 02:11:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.39570 * 2 1 4 4 C 1.54782 * 110.57288 * 122.41750 * 2 1 3 5 5 C 1.54492 * 102.05007 * 145.57615 * 4 2 1 6 6 H 1.08994 * 110.36602 * 103.65828 * 5 4 2 7 7 N 1.46499 * 110.36389 * 225.87069 * 5 4 2 8 8 C 1.34784 * 119.99893 * 203.46050 * 7 5 4 9 9 O 1.21588 * 119.99858 * 359.97438 * 8 7 5 10 10 N 1.34773 * 119.99935 * 179.72905 * 8 7 5 11 11 C 1.46496 * 119.99973 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47401 * 179.97438 * 11 10 8 13 13 C 1.52996 * 109.47091 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47006 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99971 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00059 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00036 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99818 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47604 * 90.00005 * 18 16 14 20 20 H 1.48506 * 109.46926 * 209.99973 * 18 16 14 21 21 H 1.48503 * 109.47557 * 329.99331 * 18 16 14 22 22 C 1.51327 * 104.91982 * 344.76040 * 5 4 2 23 23 O 1.20825 * 125.09066 * 177.62938 * 22 5 4 24 24 O 1.34063 * 109.81044 * 357.63385 * 22 5 4 25 25 H 1.08995 * 109.47383 * 180.96306 * 1 2 3 26 26 H 1.08996 * 109.47553 * 300.97013 * 1 2 3 27 27 H 1.09010 * 109.46637 * 60.96831 * 1 2 3 28 28 H 1.08999 * 110.86565 * 27.46292 * 4 2 1 29 29 H 1.09003 * 110.95367 * 263.72855 * 4 2 1 30 30 H 0.97005 * 120.00261 * 23.46262 * 7 5 4 31 31 H 0.97004 * 120.00018 * 359.97438 * 10 8 7 32 32 H 1.09007 * 109.47081 * 299.99672 * 11 10 8 33 33 H 1.08997 * 109.47795 * 59.99548 * 11 10 8 34 34 H 1.09002 * 109.46321 * 299.99746 * 12 11 10 35 35 H 1.08993 * 109.47232 * 59.99541 * 12 11 10 36 36 H 1.09007 * 109.47383 * 299.99699 * 13 12 11 37 37 H 1.09001 * 109.47155 * 60.00046 * 13 12 11 38 38 H 0.96995 * 119.99745 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9099 1.0216 0.0000 4 6 2.0739 -0.7768 1.2233 5 6 3.3540 -1.4250 0.6506 6 1 4.2379 -0.8892 0.9967 7 7 3.4292 -2.8354 1.0395 8 6 4.6219 -3.4622 1.0743 9 8 5.6354 -2.8572 0.7825 10 7 4.6916 -4.7583 1.4373 11 6 5.9880 -5.4394 1.4757 12 6 5.7887 -6.8910 1.9165 13 6 7.1426 -7.6025 1.9560 14 6 6.9463 -9.0320 2.3908 15 1 5.9550 -9.3966 2.6161 16 6 8.0323 -9.8743 2.5010 17 7 9.2394 -9.4304 2.2263 18 14 7.7889 -11.6464 3.0393 19 1 7.5624 -12.4999 1.8454 20 1 8.9994 -12.1154 3.7606 21 1 6.6115 -11.7329 3.9402 22 6 3.2161 -1.2993 -0.8511 23 8 4.0427 -1.6561 -1.6568 24 8 2.0393 -0.7327 -1.1534 25 1 -0.3634 -1.0275 0.0173 26 1 -0.3634 0.5288 0.8811 27 1 -0.3633 0.4988 -0.8986 28 1 1.3642 -1.5385 1.5464 29 1 2.3150 -0.0974 2.0408 30 1 2.6206 -3.3182 1.2720 31 1 3.8835 -5.2398 1.6740 32 1 6.4385 -5.4194 0.4833 33 1 6.6443 -4.9322 2.1828 34 1 5.3385 -6.9105 2.9090 35 1 5.1324 -7.3985 1.2097 36 1 7.5925 -7.5828 0.9633 37 1 7.7993 -7.0950 2.6626 38 1 10.0034 -10.0230 2.3042 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000892792771.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:38 Heat of formation + Delta-G solvation = -124.705858 kcal Electronic energy + Delta-G solvation = -20129.926609 eV Core-core repulsion = 16779.244794 eV Total energy + Delta-G solvation = -3350.681815 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.45 seconds Orbital eigenvalues (eV) -41.52973 -39.63699 -37.81057 -35.77923 -34.90789 -33.36159 -32.89389 -31.29587 -29.82581 -26.63477 -25.11151 -23.18862 -22.55556 -21.54581 -20.76271 -20.35435 -18.47712 -17.65317 -17.14064 -16.95288 -16.28755 -15.50049 -15.43261 -14.66690 -14.49485 -14.34746 -14.26999 -13.94390 -13.79132 -13.40925 -12.99536 -12.53984 -12.36900 -12.27226 -11.81048 -11.78012 -11.60839 -11.01808 -10.92701 -10.85417 -10.71942 -10.58769 -10.17889 -9.85194 -9.44418 -9.28858 -9.11598 -8.68029 -8.36058 -6.00580 -4.03744 1.70958 2.52673 2.93339 3.20812 3.31584 3.37845 3.40405 3.63812 3.74052 3.99048 4.23112 4.31413 4.45712 4.55680 4.72457 4.99444 5.14141 5.15815 5.29568 5.35127 5.51198 5.69079 5.82142 6.08895 6.20099 6.41678 6.50383 6.63015 6.71631 6.96532 7.02391 7.26483 7.65142 7.78055 7.98332 8.02657 8.38969 8.65358 9.02943 9.60297 11.10754 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.047697 B = 0.002704 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.894439 B =10353.595854 C =10586.420376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C 0.079 3.921 3 H 0.100 0.900 4 C -0.158 4.158 5 C 0.109 3.891 6 H 0.131 0.869 7 N -0.734 5.734 8 C 0.700 3.300 9 O -0.577 6.577 10 N -0.737 5.737 11 C 0.134 3.866 12 C -0.120 4.120 13 C 0.024 3.976 14 C -0.522 4.522 15 H 0.055 0.945 16 C 0.056 3.944 17 N -0.893 5.893 18 Si 0.893 3.107 19 H -0.280 1.280 20 H -0.286 1.286 21 H -0.274 1.274 22 C 0.464 3.536 23 O -0.426 6.426 24 O -0.346 6.346 25 H 0.069 0.931 26 H 0.083 0.917 27 H 0.072 0.928 28 H 0.099 0.901 29 H 0.109 0.891 30 H 0.400 0.600 31 H 0.394 0.606 32 H 0.064 0.936 33 H 0.064 0.936 34 H 0.054 0.946 35 H 0.054 0.946 36 H 0.020 0.980 37 H 0.019 0.981 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.604 20.102 0.115 28.786 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.024 3.976 3 H 0.118 0.882 4 C -0.196 4.196 5 C 0.000 4.000 6 H 0.149 0.851 7 N -0.394 5.394 8 C 0.400 3.600 9 O -0.453 6.453 10 N -0.391 5.391 11 C 0.011 3.989 12 C -0.158 4.158 13 C -0.014 4.014 14 C -0.561 4.561 15 H 0.073 0.927 16 C -0.145 4.145 17 N -0.532 5.532 18 Si 0.721 3.279 19 H -0.207 1.207 20 H -0.212 1.212 21 H -0.199 1.199 22 C 0.299 3.701 23 O -0.305 6.305 24 O -0.263 6.263 25 H 0.088 0.912 26 H 0.102 0.898 27 H 0.091 0.909 28 H 0.117 0.883 29 H 0.127 0.873 30 H 0.236 0.764 31 H 0.227 0.773 32 H 0.082 0.918 33 H 0.082 0.918 34 H 0.073 0.927 35 H 0.073 0.927 36 H 0.038 0.962 37 H 0.038 0.962 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges -19.120 20.406 -0.766 27.974 hybrid contribution -0.775 -1.479 0.589 1.771 sum -19.895 18.926 -0.177 27.460 Atomic orbital electron populations 1.21912 0.91472 1.03848 1.03628 1.23731 0.96522 0.95485 0.81902 0.88246 1.23410 0.96192 1.01333 0.98679 1.21959 1.01546 0.84421 0.92036 0.85136 1.44868 1.08977 1.10410 1.75105 1.16008 0.83374 0.82219 0.78423 1.90962 1.33682 1.65700 1.54961 1.45349 1.11737 1.09513 1.72530 1.21564 0.82279 0.93195 1.01851 1.21892 1.02260 0.91648 0.99989 1.19032 0.90091 0.94592 0.97695 1.21199 0.93317 0.95810 1.45731 0.92666 1.25035 0.95267 0.98700 0.95507 1.69966 0.98426 1.35883 1.48959 0.86578 0.77582 0.85010 0.78706 1.20662 1.21211 1.19925 1.23651 0.79550 0.75099 0.91774 1.90783 1.38776 1.44025 1.56899 1.87099 1.35364 1.63424 1.40456 0.91187 0.89827 0.90936 0.88293 0.87293 0.76437 0.77252 0.91770 0.91793 0.92744 0.92745 0.96196 0.96214 0.92916 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 12. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.45 9.58 37.16 0.36 -0.09 16 2 C 0.08 0.38 4.17 -25.79 -0.11 0.28 16 3 H 0.10 0.32 8.14 -51.93 -0.42 -0.11 16 4 C -0.16 -0.65 6.47 -25.01 -0.16 -0.81 16 5 C 0.11 1.02 3.30 -67.99 -0.22 0.80 16 6 H 0.13 1.35 7.60 -51.93 -0.39 0.95 16 7 N -0.73 -7.68 5.14 -58.74 -0.30 -7.98 16 8 C 0.70 10.86 8.56 -86.91 -0.74 10.12 16 9 O -0.58 -11.65 16.02 5.29 0.08 -11.57 16 10 N -0.74 -10.77 5.56 -65.22 -0.36 -11.14 16 11 C 0.13 2.43 5.67 -4.04 -0.02 2.41 16 12 C -0.12 -2.36 5.27 -26.73 -0.14 -2.50 16 13 C 0.02 0.60 4.97 -27.88 -0.14 0.47 16 14 C -0.52 -14.66 9.11 -34.44 -0.31 -14.98 16 15 H 0.06 1.49 7.74 -52.49 -0.41 1.08 16 16 C 0.06 1.62 5.46 -17.82 -0.10 1.52 16 17 N -0.89 -27.03 13.29 55.43 0.74 -26.30 16 18 Si 0.89 21.59 29.54 -169.99 -5.02 16.57 16 19 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 20 H -0.29 -6.86 7.11 56.52 0.40 -6.46 16 21 H -0.27 -6.45 7.11 56.52 0.40 -6.05 16 22 C 0.46 5.90 8.21 36.31 0.30 6.20 16 23 O -0.43 -7.66 18.00 -18.41 -0.33 -7.99 16 24 O -0.35 -3.48 10.76 -38.47 -0.41 -3.90 16 25 H 0.07 0.23 8.13 -51.93 -0.42 -0.19 16 26 H 0.08 0.08 8.14 -51.93 -0.42 -0.34 16 27 H 0.07 0.24 8.14 -51.92 -0.42 -0.18 16 28 H 0.10 0.26 7.48 -51.93 -0.39 -0.12 16 29 H 0.11 0.22 8.14 -51.93 -0.42 -0.20 16 30 H 0.40 2.76 8.35 -40.82 -0.34 2.41 16 31 H 0.39 4.44 8.49 -40.82 -0.35 4.09 16 32 H 0.06 1.27 8.14 -51.93 -0.42 0.85 16 33 H 0.06 1.22 8.14 -51.93 -0.42 0.80 16 34 H 0.05 1.01 8.14 -51.93 -0.42 0.59 16 35 H 0.05 1.03 8.14 -51.93 -0.42 0.61 16 36 H 0.02 0.54 8.14 -51.93 -0.42 0.12 16 37 H 0.02 0.53 8.14 -51.93 -0.42 0.11 16 38 H 0.26 7.45 8.31 -40.82 -0.34 7.11 16 LS Contribution 327.91 15.07 4.94 4.94 Total: -1.00 -37.55 327.91 -7.63 -45.18 By element: Atomic # 1 Polarization: 4.44 SS G_CDS: -5.66 Total: -1.23 kcal Atomic # 6 Polarization: 4.71 SS G_CDS: -1.30 Total: 3.41 kcal Atomic # 7 Polarization: -45.49 SS G_CDS: 0.07 Total: -45.41 kcal Atomic # 8 Polarization: -22.80 SS G_CDS: -0.66 Total: -23.46 kcal Atomic # 14 Polarization: 21.59 SS G_CDS: -5.02 Total: 16.57 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -37.55 -7.63 -45.18 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892792771.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.529 kcal (2) G-P(sol) polarization free energy of solvation -37.551 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -117.079 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.626 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.177 kcal (6) G-S(sol) free energy of system = (1) + (5) -124.706 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.45 seconds