Wall clock time and date at job start Mon Mar 30 2020 02:11:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.08996 * 110.39570 * 2 1 4 4 C 1.54782 * 110.57288 * 122.41750 * 2 1 3 5 5 C 1.54492 * 102.05007 * 145.57615 * 4 2 1 6 6 H 1.08994 * 110.36602 * 103.65828 * 5 4 2 7 7 N 1.46499 * 110.36389 * 225.87069 * 5 4 2 8 8 C 1.34784 * 119.99893 * 203.46050 * 7 5 4 9 9 O 1.21588 * 119.99858 * 359.97438 * 8 7 5 10 10 N 1.34773 * 119.99935 * 179.72905 * 8 7 5 11 11 C 1.46496 * 119.99973 * 180.02562 * 10 8 7 12 12 C 1.53005 * 109.47401 * 179.97438 * 11 10 8 13 13 C 1.52996 * 109.47091 * 179.97438 * 12 11 10 14 14 C 1.50703 * 109.47006 * 179.97438 * 13 12 11 15 15 H 1.08002 * 119.99971 * 0.02562 * 14 13 12 16 16 C 1.37878 * 120.00059 * 180.02562 * 14 13 12 17 17 N 1.31512 * 120.00036 * 359.97438 * 16 14 13 18 18 Si 1.86795 * 119.99818 * 180.02562 * 16 14 13 19 19 H 1.48501 * 109.47604 * 90.00005 * 18 16 14 20 20 H 1.48506 * 109.46926 * 209.99973 * 18 16 14 21 21 H 1.48503 * 109.47557 * 329.99331 * 18 16 14 22 22 C 1.51327 * 104.91982 * 344.76040 * 5 4 2 23 23 O 1.20825 * 125.09066 * 177.62938 * 22 5 4 24 24 O 1.34063 * 109.81044 * 357.63385 * 22 5 4 25 25 H 1.08995 * 109.47383 * 180.96306 * 1 2 3 26 26 H 1.08996 * 109.47553 * 300.97013 * 1 2 3 27 27 H 1.09010 * 109.46637 * 60.96831 * 1 2 3 28 28 H 1.08999 * 110.86565 * 27.46292 * 4 2 1 29 29 H 1.09003 * 110.95367 * 263.72855 * 4 2 1 30 30 H 0.97005 * 120.00261 * 23.46262 * 7 5 4 31 31 H 0.97004 * 120.00018 * 359.97438 * 10 8 7 32 32 H 1.09007 * 109.47081 * 299.99672 * 11 10 8 33 33 H 1.08997 * 109.47795 * 59.99548 * 11 10 8 34 34 H 1.09002 * 109.46321 * 299.99746 * 12 11 10 35 35 H 1.08993 * 109.47232 * 59.99541 * 12 11 10 36 36 H 1.09007 * 109.47383 * 299.99699 * 13 12 11 37 37 H 1.09001 * 109.47155 * 60.00046 * 13 12 11 38 38 H 0.96995 * 119.99745 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9099 1.0216 0.0000 4 6 2.0739 -0.7768 1.2233 5 6 3.3540 -1.4250 0.6506 6 1 4.2379 -0.8892 0.9967 7 7 3.4292 -2.8354 1.0395 8 6 4.6219 -3.4622 1.0743 9 8 5.6354 -2.8572 0.7825 10 7 4.6916 -4.7583 1.4373 11 6 5.9880 -5.4394 1.4757 12 6 5.7887 -6.8910 1.9165 13 6 7.1426 -7.6025 1.9560 14 6 6.9463 -9.0320 2.3908 15 1 5.9550 -9.3966 2.6161 16 6 8.0323 -9.8743 2.5010 17 7 9.2394 -9.4304 2.2263 18 14 7.7889 -11.6464 3.0393 19 1 7.5624 -12.4999 1.8454 20 1 8.9994 -12.1154 3.7606 21 1 6.6115 -11.7329 3.9402 22 6 3.2161 -1.2993 -0.8511 23 8 4.0427 -1.6561 -1.6568 24 8 2.0393 -0.7327 -1.1534 25 1 -0.3634 -1.0275 0.0173 26 1 -0.3634 0.5288 0.8811 27 1 -0.3633 0.4988 -0.8986 28 1 1.3642 -1.5385 1.5464 29 1 2.3150 -0.0974 2.0408 30 1 2.6206 -3.3182 1.2720 31 1 3.8835 -5.2398 1.6740 32 1 6.4385 -5.4194 0.4833 33 1 6.6443 -4.9322 2.1828 34 1 5.3385 -6.9105 2.9090 35 1 5.1324 -7.3985 1.2097 36 1 7.5925 -7.5828 0.9633 37 1 7.7993 -7.0950 2.6626 38 1 10.0034 -10.0230 2.3042 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892792771.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:37 Heat of formation + Delta-G solvation = -153.323982 kcal Electronic energy + Delta-G solvation = -20131.167584 eV Core-core repulsion = 16779.244794 eV Total energy + Delta-G solvation = -3351.922790 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.35675 -40.83011 -38.81139 -37.16570 -36.07453 -35.21384 -33.62311 -32.89609 -30.68134 -28.38607 -25.81245 -24.93403 -23.09564 -22.64807 -22.31263 -21.50418 -19.59351 -18.58787 -18.39959 -17.98737 -17.84316 -16.79971 -16.63391 -16.36386 -15.72469 -15.51063 -15.36268 -14.97761 -14.75857 -14.27765 -13.80373 -13.72383 -13.57453 -13.43553 -13.02264 -12.90060 -12.75471 -12.54553 -12.36858 -12.10289 -11.91074 -11.72579 -11.66831 -11.51878 -11.32976 -11.16077 -10.55185 -10.43373 -9.89751 -8.18970 -6.30679 0.74348 1.41994 1.43726 1.54376 1.58562 1.95312 2.21294 2.42445 2.90544 3.12684 3.14810 3.24984 3.67156 3.88692 4.13737 4.19416 4.22550 4.25208 4.55401 4.70984 4.81052 4.90887 4.95187 4.96886 5.01773 5.16803 5.22994 5.32396 5.43313 5.53019 5.71071 5.71202 5.84598 5.87933 6.22578 6.32042 6.86720 6.99388 7.38911 7.47445 8.93345 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.047697 B = 0.002704 C = 0.002644 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 586.894439 B =10353.595854 C =10586.420376 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.070 3.930 3 H 0.119 0.881 4 C -0.137 4.137 5 C 0.107 3.893 6 H 0.120 0.880 7 N -0.713 5.713 8 C 0.696 3.304 9 O -0.628 6.628 10 N -0.725 5.725 11 C 0.149 3.851 12 C -0.099 4.099 13 C 0.022 3.978 14 C -0.540 4.540 15 H 0.068 0.932 16 C -0.005 4.005 17 N -0.936 5.936 18 Si 0.969 3.031 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.258 1.258 22 C 0.463 3.537 23 O -0.496 6.496 24 O -0.360 6.360 25 H 0.068 0.932 26 H 0.113 0.887 27 H 0.065 0.935 28 H 0.123 0.877 29 H 0.142 0.858 30 H 0.422 0.578 31 H 0.414 0.586 32 H 0.040 0.960 33 H 0.051 0.949 34 H 0.073 0.927 35 H 0.066 0.934 36 H -0.011 1.011 37 H -0.006 1.006 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -24.024 20.173 1.978 31.433 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C 0.015 3.985 3 H 0.136 0.864 4 C -0.175 4.175 5 C -0.002 4.002 6 H 0.138 0.862 7 N -0.373 5.373 8 C 0.395 3.605 9 O -0.509 6.509 10 N -0.381 5.381 11 C 0.024 3.976 12 C -0.137 4.137 13 C -0.015 4.015 14 C -0.578 4.578 15 H 0.086 0.914 16 C -0.203 4.203 17 N -0.577 5.577 18 Si 0.793 3.207 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.182 1.182 22 C 0.302 3.698 23 O -0.380 6.380 24 O -0.277 6.277 25 H 0.087 0.913 26 H 0.131 0.869 27 H 0.084 0.916 28 H 0.141 0.859 29 H 0.160 0.840 30 H 0.261 0.739 31 H 0.251 0.749 32 H 0.059 0.941 33 H 0.070 0.930 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.007 0.993 37 H 0.012 0.988 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -22.673 20.493 1.132 30.583 hybrid contribution 0.212 -1.388 -0.013 1.404 sum -22.461 19.106 1.120 29.509 Atomic orbital electron populations 1.21970 0.89610 1.04210 1.04759 1.24258 0.97883 0.95900 0.80410 0.86362 1.23515 0.93304 1.01869 0.98771 1.22163 1.04178 0.83760 0.90083 0.86216 1.44646 1.08096 1.10970 1.73580 1.16227 0.84123 0.82144 0.77960 1.90935 1.36017 1.66843 1.57056 1.44961 1.11203 1.09446 1.72457 1.21109 0.83772 0.92650 1.00086 1.21582 0.98902 0.91719 1.01486 1.18952 0.92813 0.94704 0.95061 1.21681 0.93943 0.96830 1.45322 0.91364 1.26057 0.94889 1.03829 0.95519 1.70120 0.99485 1.37778 1.50279 0.85390 0.77947 0.78796 0.78547 1.19955 1.21061 1.18212 1.24223 0.79275 0.73631 0.92704 1.90739 1.41329 1.47025 1.58879 1.87078 1.33991 1.63202 1.43420 0.91288 0.86853 0.91563 0.85872 0.84019 0.73939 0.74884 0.94122 0.93040 0.90829 0.91488 0.99259 0.98795 0.92829 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.35 9.58 71.98 0.69 0.34 16 2 C 0.07 0.46 4.17 31.20 0.13 0.59 16 3 H 0.12 0.37 8.14 -2.39 -0.02 0.35 16 4 C -0.14 -0.58 6.47 31.71 0.21 -0.37 16 5 C 0.11 1.85 3.30 44.95 0.15 1.99 16 6 H 0.12 2.42 7.60 -2.39 -0.02 2.40 16 7 N -0.71 -13.67 5.14 -458.00 -2.35 -16.03 16 8 C 0.70 21.35 8.56 179.05 1.53 22.88 16 9 O -0.63 -26.21 16.02 -3.99 -0.06 -26.27 16 10 N -0.72 -20.47 5.56 -478.53 -2.66 -23.13 16 11 C 0.15 5.47 5.67 86.38 0.49 5.96 16 12 C -0.10 -3.84 5.27 30.59 0.16 -3.68 16 13 C 0.02 1.18 4.97 29.85 0.15 1.33 16 14 C -0.54 -30.29 9.11 25.60 0.23 -30.05 16 15 H 0.07 3.57 7.74 -2.91 -0.02 3.55 16 16 C -0.01 -0.31 5.46 84.66 0.46 0.15 16 17 N -0.94 -57.92 13.29 21.45 0.28 -57.63 16 18 Si 0.97 44.01 29.54 68.60 2.03 46.04 16 19 H -0.27 -12.09 7.11 99.48 0.71 -11.38 16 20 H -0.28 -12.78 7.11 99.48 0.71 -12.07 16 21 H -0.26 -10.97 7.11 99.48 0.71 -10.26 16 22 C 0.46 11.90 8.21 71.44 0.59 12.48 16 23 O -0.50 -18.90 18.00 21.64 0.39 -18.51 16 24 O -0.36 -6.92 10.76 -50.15 -0.54 -7.46 16 25 H 0.07 0.21 8.13 -2.39 -0.02 0.19 16 26 H 0.11 -0.35 8.14 -2.39 -0.02 -0.37 16 27 H 0.07 0.27 8.14 -2.38 -0.02 0.25 16 28 H 0.12 0.00 7.48 -2.39 -0.02 -0.02 16 29 H 0.14 -0.19 8.14 -2.39 -0.02 -0.21 16 30 H 0.42 4.44 8.35 -92.70 -0.77 3.67 16 31 H 0.41 8.28 8.49 -92.71 -0.79 7.49 16 32 H 0.04 1.68 8.14 -2.38 -0.02 1.67 16 33 H 0.05 2.02 8.14 -2.39 -0.02 2.00 16 34 H 0.07 2.59 8.14 -2.39 -0.02 2.57 16 35 H 0.07 2.44 8.14 -2.39 -0.02 2.42 16 36 H -0.01 -0.64 8.14 -2.38 -0.02 -0.66 16 37 H -0.01 -0.36 8.14 -2.39 -0.02 -0.38 16 38 H 0.26 15.29 8.31 -92.71 -0.77 14.52 16 Total: -1.00 -87.03 327.91 1.39 -85.64 By element: Atomic # 1 Polarization: 6.21 SS G_CDS: -0.48 Total: 5.73 kcal Atomic # 6 Polarization: 6.84 SS G_CDS: 4.79 Total: 11.63 kcal Atomic # 7 Polarization: -92.06 SS G_CDS: -4.73 Total: -96.79 kcal Atomic # 8 Polarization: -52.03 SS G_CDS: -0.21 Total: -52.25 kcal Atomic # 14 Polarization: 44.01 SS G_CDS: 2.03 Total: 46.04 kcal Total: -87.03 1.39 -85.64 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892792771.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.685 kcal (2) G-P(sol) polarization free energy of solvation -87.027 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.712 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.388 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.639 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.324 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds