Wall clock time and date at job start Mon Mar 30 2020 02:11:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08998 * 110.39056 * 2 1 4 4 C 1.54570 * 110.44397 * 237.57456 * 2 1 3 5 5 C 1.54487 * 102.14901 * 214.28673 * 4 2 1 6 6 H 1.08996 * 110.37024 * 134.28767 * 5 4 2 7 7 N 1.46500 * 110.36826 * 256.51092 * 5 4 2 8 8 C 1.34783 * 119.99649 * 204.99884 * 7 5 4 9 9 O 1.21585 * 119.99913 * 0.02562 * 8 7 5 10 10 N 1.34779 * 119.99768 * 179.97438 * 8 7 5 11 11 C 1.46499 * 119.99872 * 179.97438 * 10 8 7 12 12 C 1.53000 * 109.46840 * 179.97438 * 11 10 8 13 13 C 1.52997 * 109.47060 * 180.02562 * 12 11 10 14 14 C 1.50697 * 109.47466 * 180.02562 * 13 12 11 15 15 H 1.08001 * 119.99890 * 0.02562 * 14 13 12 16 16 C 1.37876 * 120.00428 * 179.97438 * 14 13 12 17 17 N 1.31519 * 119.99563 * 0.02562 * 16 14 13 18 18 Si 1.86800 * 120.00432 * 179.97438 * 16 14 13 19 19 H 1.48506 * 109.46838 * 89.99826 * 18 16 14 20 20 H 1.48497 * 109.47419 * 209.99978 * 18 16 14 21 21 H 1.48499 * 109.47011 * 330.00539 * 18 16 14 22 22 C 1.51331 * 104.82305 * 15.34595 * 5 4 2 23 23 O 1.20822 * 125.09473 * 182.29528 * 22 5 4 24 24 O 1.34059 * 109.81276 * 2.31256 * 22 5 4 25 25 H 1.09002 * 109.47035 * 182.42170 * 1 2 3 26 26 H 1.08992 * 109.47460 * 302.42413 * 1 2 3 27 27 H 1.09002 * 109.47256 * 62.42582 * 1 2 3 28 28 H 1.09002 * 110.86801 * 96.11820 * 4 2 1 29 29 H 1.08998 * 111.04558 * 332.53134 * 4 2 1 30 30 H 0.96992 * 120.00454 * 24.99785 * 7 5 4 31 31 H 0.97005 * 119.99680 * 0.02562 * 10 8 7 32 32 H 1.09001 * 109.46813 * 60.00258 * 11 10 8 33 33 H 1.08992 * 109.47397 * 300.00319 * 11 10 8 34 34 H 1.09002 * 109.47398 * 300.00326 * 12 11 10 35 35 H 1.09001 * 109.47194 * 60.00507 * 12 11 10 36 36 H 1.09002 * 109.47153 * 300.00319 * 13 12 11 37 37 H 1.08998 * 109.47533 * 59.99948 * 13 12 11 38 38 H 0.97002 * 119.99731 * 180.02562 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.9097 1.0217 0.0000 4 6 2.0699 -0.7766 -1.2225 5 6 3.3527 -1.4244 -0.6556 6 1 3.4090 -2.4731 -0.9474 7 7 4.5382 -0.7016 -1.1228 8 6 5.7276 -1.3318 -1.1924 9 8 5.8165 -2.5001 -0.8679 10 7 6.8182 -0.6670 -1.6228 11 6 8.1112 -1.3517 -1.6979 12 6 9.1739 -0.3794 -2.2138 13 6 10.5241 -1.0947 -2.2929 14 6 11.5710 -0.1369 -2.8004 15 1 11.3006 0.8804 -3.0419 16 6 12.8744 -0.5590 -2.9553 17 7 13.2039 -1.7977 -2.6607 18 14 14.1721 0.6280 -3.5851 19 1 14.7982 1.3316 -2.4369 20 1 15.2120 -0.1253 -4.3308 21 1 13.5375 1.6216 -4.4880 22 6 3.2179 -1.2999 0.8466 23 8 4.0460 -1.6576 1.6503 24 8 2.0418 -0.7336 1.1519 25 1 -0.3633 -1.0268 0.0434 26 1 -0.3634 0.5510 0.8674 27 1 -0.3634 0.4757 -0.9109 28 1 2.3072 -0.0965 -2.0406 29 1 1.3609 -1.5384 -1.5466 30 1 4.4672 0.2303 -1.3820 31 1 6.7472 0.2651 -1.8820 32 1 8.0341 -2.1997 -2.3784 33 1 8.3929 -1.7060 -0.7064 34 1 8.8920 -0.0256 -3.2054 35 1 9.2511 0.4689 -1.5336 36 1 10.8063 -1.4489 -1.3014 37 1 10.4468 -1.9428 -2.9732 38 1 14.1210 -2.0945 -2.7694 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000892792773.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:11:43 Heat of formation + Delta-G solvation = -153.234499 kcal Electronic energy + Delta-G solvation = -20139.963808 eV Core-core repulsion = 16788.044897 eV Total energy + Delta-G solvation = -3351.918910 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.48 seconds Orbital eigenvalues (eV) -42.38084 -40.81782 -38.82052 -37.16190 -36.08223 -35.21133 -33.59862 -32.88389 -30.67942 -28.37179 -25.84424 -24.96461 -22.99730 -22.48168 -22.30517 -21.89065 -19.52266 -18.76635 -18.41577 -17.94888 -17.22354 -16.89120 -16.69462 -16.45867 -15.78162 -15.53687 -15.40708 -15.19237 -14.62497 -14.27137 -13.77305 -13.69554 -13.57489 -13.50235 -12.97206 -12.80018 -12.73778 -12.54220 -12.36844 -12.19488 -11.93893 -11.70461 -11.66445 -11.48465 -11.33709 -11.16077 -10.54962 -10.44101 -9.89934 -8.18785 -6.30480 0.70992 1.42170 1.43860 1.54679 1.66887 1.96004 2.16414 2.42526 2.88863 3.14416 3.15002 3.25962 3.57731 3.94039 4.15378 4.21302 4.23003 4.30234 4.55758 4.66304 4.83074 4.91084 4.95638 4.97806 5.03074 5.16992 5.19675 5.32770 5.43720 5.53362 5.71493 5.72507 5.84852 5.88117 6.22761 6.31418 6.87011 7.00704 7.39118 7.48298 8.93491 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.049110 B = 0.002699 C = 0.002645 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 570.014227 B =10373.165916 C =10584.714330 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C 0.068 3.932 3 H 0.118 0.882 4 C -0.139 4.139 5 C 0.106 3.894 6 H 0.118 0.882 7 N -0.713 5.713 8 C 0.697 3.303 9 O -0.630 6.630 10 N -0.724 5.724 11 C 0.148 3.852 12 C -0.099 4.099 13 C 0.022 3.978 14 C -0.539 4.539 15 H 0.068 0.932 16 C -0.006 4.006 17 N -0.936 5.936 18 Si 0.969 3.031 19 H -0.274 1.274 20 H -0.285 1.285 21 H -0.258 1.258 22 C 0.465 3.535 23 O -0.495 6.495 24 O -0.360 6.360 25 H 0.067 0.933 26 H 0.066 0.934 27 H 0.113 0.887 28 H 0.141 0.859 29 H 0.128 0.872 30 H 0.422 0.578 31 H 0.415 0.585 32 H 0.051 0.949 33 H 0.040 0.960 34 H 0.073 0.927 35 H 0.067 0.933 36 H -0.011 1.011 37 H -0.007 1.007 38 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -29.659 9.345 -1.072 31.114 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.206 4.206 2 C 0.015 3.985 3 H 0.136 0.864 4 C -0.176 4.176 5 C -0.002 4.002 6 H 0.136 0.864 7 N -0.373 5.373 8 C 0.397 3.603 9 O -0.510 6.510 10 N -0.380 5.380 11 C 0.024 3.976 12 C -0.137 4.137 13 C -0.016 4.016 14 C -0.577 4.577 15 H 0.087 0.913 16 C -0.203 4.203 17 N -0.577 5.577 18 Si 0.793 3.207 19 H -0.200 1.200 20 H -0.211 1.211 21 H -0.182 1.182 22 C 0.304 3.696 23 O -0.379 6.379 24 O -0.277 6.277 25 H 0.086 0.914 26 H 0.085 0.915 27 H 0.132 0.868 28 H 0.159 0.841 29 H 0.146 0.854 30 H 0.261 0.739 31 H 0.252 0.748 32 H 0.069 0.931 33 H 0.059 0.941 34 H 0.092 0.908 35 H 0.085 0.915 36 H 0.007 0.993 37 H 0.012 0.988 38 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -29.173 8.014 -0.202 30.254 hybrid contribution 1.247 0.578 -0.054 1.375 sum -27.926 8.591 -0.256 29.219 Atomic orbital electron populations 1.21971 0.89736 1.04062 1.04870 1.24265 0.97865 0.95863 0.80540 0.86443 1.23442 0.93088 1.02403 0.98687 1.22126 0.87357 1.01315 0.89432 0.86384 1.44611 1.05530 1.15851 1.71321 1.16211 0.81402 0.84679 0.78050 1.90932 1.85418 1.17711 1.56959 1.44953 1.06992 1.15739 1.70338 1.21104 0.81132 0.95474 0.99915 1.21580 0.93306 0.97608 1.01175 1.18953 0.92228 0.95318 0.95060 1.21679 0.94183 0.98226 1.43649 0.91342 1.26061 1.01463 0.96984 0.95812 1.70126 1.19336 1.18233 1.49976 0.85389 0.78139 0.78607 0.78542 1.19956 1.21091 1.18195 1.24209 0.79299 0.73544 0.92542 1.90735 1.41168 1.47007 1.59010 1.87075 1.34236 1.63051 1.43353 0.91421 0.91517 0.86825 0.84096 0.85377 0.73885 0.74841 0.93082 0.94141 0.90811 0.91451 0.99281 0.98813 0.92843 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.36 9.57 71.98 0.69 0.32 16 2 C 0.07 0.44 4.17 31.13 0.13 0.57 16 3 H 0.12 0.30 8.14 -2.39 -0.02 0.28 16 4 C -0.14 -0.59 6.38 31.63 0.20 -0.38 16 5 C 0.11 1.83 3.33 44.95 0.15 1.98 16 6 H 0.12 2.49 7.55 -2.39 -0.02 2.47 16 7 N -0.71 -13.07 5.08 -458.00 -2.33 -15.40 16 8 C 0.70 21.04 8.57 179.05 1.53 22.57 16 9 O -0.63 -26.16 15.99 -3.98 -0.06 -26.22 16 10 N -0.72 -20.06 5.56 -478.54 -2.66 -22.72 16 11 C 0.15 5.42 5.67 86.38 0.49 5.91 16 12 C -0.10 -3.80 5.27 30.59 0.16 -3.64 16 13 C 0.02 1.17 4.97 29.85 0.15 1.31 16 14 C -0.54 -30.15 9.11 25.60 0.23 -29.92 16 15 H 0.07 3.56 7.74 -2.91 -0.02 3.54 16 16 C -0.01 -0.33 5.46 84.65 0.46 0.13 16 17 N -0.94 -57.82 13.29 21.45 0.28 -57.54 16 18 Si 0.97 43.89 29.54 68.60 2.03 45.92 16 19 H -0.27 -12.05 7.11 99.48 0.71 -11.34 16 20 H -0.29 -12.77 7.11 99.48 0.71 -12.06 16 21 H -0.26 -10.92 7.11 99.48 0.71 -10.22 16 22 C 0.47 11.87 8.21 71.44 0.59 12.45 16 23 O -0.50 -18.72 18.00 21.65 0.39 -18.33 16 24 O -0.36 -6.90 10.76 -50.11 -0.54 -7.44 16 25 H 0.07 0.25 8.14 -2.39 -0.02 0.23 16 26 H 0.07 0.26 8.14 -2.39 -0.02 0.24 16 27 H 0.11 -0.35 8.14 -2.39 -0.02 -0.37 16 28 H 0.14 -0.27 7.89 -2.39 -0.02 -0.29 16 29 H 0.13 0.12 7.94 -2.39 -0.02 0.10 16 30 H 0.42 3.82 8.53 -92.71 -0.79 3.03 16 31 H 0.41 7.99 8.49 -92.70 -0.79 7.20 16 32 H 0.05 1.99 8.14 -2.39 -0.02 1.97 16 33 H 0.04 1.67 8.14 -2.39 -0.02 1.65 16 34 H 0.07 2.57 8.14 -2.39 -0.02 2.55 16 35 H 0.07 2.43 8.14 -2.39 -0.02 2.41 16 36 H -0.01 -0.65 8.14 -2.39 -0.02 -0.67 16 37 H -0.01 -0.37 8.14 -2.39 -0.02 -0.39 16 38 H 0.26 15.26 8.31 -92.71 -0.77 14.49 16 Total: -1.00 -86.98 328.12 1.39 -85.59 By element: Atomic # 1 Polarization: 5.33 SS G_CDS: -0.50 Total: 4.83 kcal Atomic # 6 Polarization: 6.53 SS G_CDS: 4.79 Total: 11.32 kcal Atomic # 7 Polarization: -90.96 SS G_CDS: -4.70 Total: -95.66 kcal Atomic # 8 Polarization: -51.77 SS G_CDS: -0.21 Total: -51.99 kcal Atomic # 14 Polarization: 43.89 SS G_CDS: 2.03 Total: 45.92 kcal Total: -86.98 1.39 -85.59 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000892792773.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -67.646 kcal (2) G-P(sol) polarization free energy of solvation -86.983 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -154.629 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.394 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -85.589 kcal (6) G-S(sol) free energy of system = (1) + (5) -153.234 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.48 seconds