Wall clock time and date at job start Mon Mar 30 2020 02:22:59 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47287 * 2 1 4 4 C 1.50697 * 109.47090 * 239.99485 * 2 1 3 5 5 H 1.08004 * 120.00079 * 245.00874 * 4 2 1 6 6 C 1.37878 * 119.99712 * 65.01696 * 4 2 1 7 7 N 1.31511 * 120.00487 * 6.44934 * 6 4 2 8 8 Si 1.86801 * 119.99756 * 186.45111 * 6 4 2 9 9 H 1.48508 * 109.46888 * 94.98611 * 8 6 4 10 10 H 1.48499 * 109.47448 * 214.98724 * 8 6 4 11 11 H 1.48503 * 109.47406 * 334.99261 * 8 6 4 12 12 N 1.46506 * 109.47084 * 119.99394 * 2 1 3 13 13 C 1.46499 * 119.99563 * 65.83311 * 12 2 1 14 14 C 1.34774 * 120.00261 * 245.83283 * 12 2 1 15 15 O 1.21277 * 120.00080 * 184.89478 * 14 12 2 16 16 C 1.50701 * 119.99968 * 4.89204 * 14 12 2 17 17 H 1.09008 * 109.41349 * 44.12410 * 16 14 12 18 18 O 1.42963 * 109.41447 * 163.98772 * 16 14 12 19 19 C 1.43244 * 112.98484 * 169.70058 * 18 16 14 20 20 C 1.53019 * 108.67174 * 291.63890 * 19 18 16 21 21 N 1.46086 * 109.92366 * 49.16526 * 20 19 18 22 22 C 1.46504 * 118.72968 * 161.61975 * 21 20 19 23 23 C 1.33767 * 122.51472 * 341.57513 * 21 20 19 24 24 O 1.21277 * 118.76582 * 181.93401 * 23 21 20 25 25 H 1.09004 * 109.47055 * 294.24994 * 1 2 3 26 26 H 1.09001 * 109.47466 * 54.24843 * 1 2 3 27 27 H 1.08997 * 109.47270 * 174.25154 * 1 2 3 28 28 H 0.96991 * 120.00267 * 180.02562 * 7 6 4 29 29 H 1.09007 * 109.46951 * 85.69619 * 13 12 2 30 30 H 1.09000 * 109.47014 * 205.68824 * 13 12 2 31 31 H 1.08994 * 109.47628 * 325.69697 * 13 12 2 32 32 H 1.09000 * 109.60432 * 51.39434 * 19 18 16 33 33 H 1.08999 * 109.60442 * 171.71583 * 19 18 16 34 34 H 1.09007 * 109.39555 * 169.30515 * 20 19 18 35 35 H 1.09005 * 109.39311 * 289.02022 * 20 19 18 36 36 H 1.09000 * 109.46960 * 89.99681 * 22 21 20 37 37 H 1.08996 * 109.47371 * 209.99688 * 22 21 20 38 38 H 1.08998 * 109.47179 * 330.00183 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5848 -1.6334 -1.1333 6 6 1.7866 -0.1823 -2.4800 7 7 1.2267 1.0022 -2.5949 8 14 2.2489 -1.1491 -4.0101 9 1 1.0680 -1.9114 -4.4894 10 1 2.6972 -0.2120 -5.0712 11 1 3.3488 -2.0927 -3.6859 12 7 2.0183 -0.6905 1.1963 13 6 1.7727 -2.1248 1.3656 14 6 2.6934 -0.0063 2.1410 15 8 3.1744 -0.5929 3.0872 16 6 2.8508 1.4877 2.0214 17 1 1.8986 1.9300 1.7282 18 8 3.2562 2.0253 3.2825 19 6 3.6549 3.3989 3.2030 20 6 4.9583 3.4853 2.4061 21 7 4.8328 2.7286 1.1628 22 6 5.7779 2.9976 0.0762 23 6 3.8885 1.7991 0.9790 24 8 3.8685 1.1865 -0.0675 25 1 -0.3633 0.4221 0.9370 26 1 -0.3634 0.6004 -0.8340 27 1 -0.3633 -1.0225 -0.1029 28 1 1.0535 1.3736 -3.4740 29 1 2.5562 -2.6897 0.8603 30 1 1.7747 -2.3709 2.4275 31 1 0.8048 -2.3811 0.9350 32 1 2.8794 3.9761 2.6994 33 1 3.8104 3.7933 4.2071 34 1 5.1727 4.5287 2.1748 35 1 5.7738 3.0728 3.0002 36 1 6.6457 2.3462 0.1798 37 1 5.2937 2.8081 -0.8818 38 1 6.0976 4.0387 0.1221 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900568365.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:59 Heat of formation + Delta-G solvation = -81.882092 kcal Electronic energy + Delta-G solvation = -22691.145215 eV Core-core repulsion = 19342.320377 eV Total energy + Delta-G solvation = -3348.824838 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.72583 -38.56702 -37.43735 -35.41052 -35.05776 -32.43910 -30.34353 -29.23371 -29.06573 -26.68384 -25.11340 -24.76405 -23.63365 -21.48998 -19.27802 -18.47518 -17.80714 -16.75272 -16.53485 -16.11788 -15.48230 -15.07162 -14.83692 -14.44322 -14.22714 -13.93070 -13.89661 -13.04698 -12.87739 -12.60800 -12.45874 -12.14785 -11.99119 -11.90974 -11.59861 -11.32067 -11.17441 -10.94197 -10.88409 -10.63463 -10.43033 -10.18028 -10.02535 -9.34290 -9.00979 -8.84503 -8.48656 -8.25900 -7.58252 -5.98818 -3.97523 2.78431 2.87295 3.33074 3.39810 3.41483 3.44136 3.53726 4.31209 4.49474 4.52181 4.82716 4.98937 5.08102 5.25631 5.35159 5.37376 5.43393 5.48711 5.62920 5.78553 6.06295 6.11423 6.29239 6.50533 6.52718 6.64970 6.70067 6.86248 6.96367 7.18888 7.44866 7.56910 7.78784 7.95966 8.23931 8.48290 8.51667 8.85551 9.04900 9.64663 11.10635 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.019117 B = 0.008169 C = 0.006587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.309502 B = 3426.971033 C = 4249.732019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C 0.251 3.749 3 H 0.069 0.931 4 C -0.495 4.495 5 H 0.057 0.943 6 C 0.069 3.931 7 N -0.892 5.892 8 Si 0.892 3.108 9 H -0.283 1.283 10 H -0.288 1.288 11 H -0.275 1.275 12 N -0.576 5.576 13 C 0.099 3.901 14 C 0.528 3.472 15 O -0.552 6.552 16 C 0.065 3.935 17 H 0.114 0.886 18 O -0.348 6.348 19 C 0.042 3.958 20 C 0.083 3.917 21 N -0.617 5.617 22 C 0.086 3.914 23 C 0.478 3.522 24 O -0.455 6.455 25 H 0.013 0.987 26 H 0.079 0.921 27 H 0.037 0.963 28 H 0.259 0.741 29 H 0.050 0.950 30 H 0.060 0.940 31 H 0.069 0.931 32 H 0.064 0.936 33 H 0.116 0.884 34 H 0.082 0.918 35 H 0.071 0.929 36 H 0.051 0.949 37 H 0.084 0.916 38 H 0.065 0.935 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.905 7.469 7.921 11.567 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C 0.150 3.850 3 H 0.087 0.913 4 C -0.534 4.534 5 H 0.076 0.924 6 C -0.132 4.132 7 N -0.531 5.531 8 Si 0.721 3.279 9 H -0.209 1.209 10 H -0.214 1.214 11 H -0.200 1.200 12 N -0.306 5.306 13 C -0.044 4.044 14 C 0.313 3.687 15 O -0.432 6.432 16 C 0.001 3.999 17 H 0.131 0.869 18 O -0.265 6.265 19 C -0.036 4.036 20 C -0.041 4.041 21 N -0.355 5.355 22 C -0.056 4.056 23 C 0.262 3.738 24 O -0.325 6.325 25 H 0.032 0.968 26 H 0.098 0.902 27 H 0.056 0.944 28 H 0.068 0.932 29 H 0.068 0.932 30 H 0.079 0.921 31 H 0.088 0.912 32 H 0.082 0.918 33 H 0.134 0.866 34 H 0.100 0.900 35 H 0.089 0.911 36 H 0.070 0.930 37 H 0.102 0.898 38 H 0.083 0.917 Dipole moment (debyes) X Y Z Total from point charges 4.047 6.801 7.831 11.133 hybrid contribution 0.305 -0.050 -1.224 1.263 sum 4.352 6.751 6.607 10.400 Atomic orbital electron populations 1.22180 0.99007 1.00530 0.99296 1.19309 0.90024 0.94798 0.80822 0.91314 1.21013 1.34446 1.08175 0.89760 0.92435 1.24743 0.95244 0.94622 0.98587 1.69907 1.44168 1.15596 1.23449 0.86578 0.78521 0.79864 0.82963 1.20924 1.21426 1.20040 1.48121 1.52513 1.09207 1.20777 1.21391 1.01170 0.81158 1.00649 1.19243 0.79716 0.86763 0.83011 1.90622 1.49135 1.69727 1.33691 1.22189 0.98095 0.96007 0.83636 0.86916 1.88261 1.85796 1.25013 1.27432 1.23029 0.94831 0.83811 1.01901 1.22105 0.99454 0.96772 0.85768 1.47295 1.32569 1.39744 1.15860 1.21636 0.92491 1.00012 0.91508 1.20368 0.82981 0.81086 0.89330 1.91111 1.70047 1.46117 1.25180 0.96770 0.90230 0.94406 0.93172 0.93165 0.92142 0.91216 0.91818 0.86594 0.89978 0.91070 0.93015 0.89773 0.91661 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.45 8.93 37.16 0.33 -3.12 16 2 C 0.25 6.16 1.31 -69.08 -0.09 6.07 16 3 H 0.07 1.80 4.06 -51.93 -0.21 1.59 16 4 C -0.50 -13.45 7.36 -34.44 -0.25 -13.70 16 5 H 0.06 1.61 7.10 -52.48 -0.37 1.24 16 6 C 0.07 1.90 5.27 -17.82 -0.09 1.81 16 7 N -0.89 -24.86 12.03 55.43 0.67 -24.20 16 8 Si 0.89 21.61 29.54 -169.99 -5.02 16.59 16 9 H -0.28 -6.71 7.11 56.52 0.40 -6.31 16 10 H -0.29 -6.98 7.11 56.52 0.40 -6.58 16 11 H -0.28 -6.74 7.11 56.52 0.40 -6.34 16 12 N -0.58 -13.21 2.73 -175.26 -0.48 -13.69 16 13 C 0.10 2.02 9.50 59.85 0.57 2.58 16 14 C 0.53 12.09 6.75 -10.99 -0.07 12.01 16 15 O -0.55 -13.65 16.13 -13.85 -0.22 -13.88 16 16 C 0.06 1.28 2.51 -29.20 -0.07 1.21 16 17 H 0.11 2.12 7.25 -51.92 -0.38 1.74 16 18 O -0.35 -6.04 10.07 -54.64 -0.55 -6.59 16 19 C 0.04 0.48 6.90 37.17 0.26 0.74 16 20 C 0.08 0.94 6.67 -4.26 -0.03 0.91 16 21 N -0.62 -9.81 3.23 -182.33 -0.59 -10.40 16 22 C 0.09 1.19 10.31 59.85 0.62 1.81 16 23 C 0.48 9.73 6.81 -11.60 -0.08 9.65 16 24 O -0.45 -11.17 12.08 5.56 0.07 -11.11 16 25 H 0.01 0.28 8.14 -51.93 -0.42 -0.15 16 26 H 0.08 1.95 6.88 -51.93 -0.36 1.60 16 27 H 0.04 0.82 7.12 -51.93 -0.37 0.45 16 28 H 0.26 6.94 8.31 -40.82 -0.34 6.60 16 29 H 0.05 1.03 7.80 -51.93 -0.40 0.62 16 30 H 0.06 1.15 7.37 -51.93 -0.38 0.77 16 31 H 0.07 1.31 6.87 -51.93 -0.36 0.95 16 32 H 0.06 0.67 8.10 -51.93 -0.42 0.25 16 33 H 0.12 0.94 8.14 -51.93 -0.42 0.52 16 34 H 0.08 0.66 7.99 -51.92 -0.41 0.24 16 35 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 36 H 0.05 0.70 8.14 -51.93 -0.42 0.27 16 37 H 0.08 1.39 7.29 -51.93 -0.38 1.01 16 38 H 0.06 0.66 7.93 -51.93 -0.41 0.25 16 LS Contribution 306.10 15.07 4.61 4.61 Total: -1.00 -33.89 306.10 -5.72 -39.61 By element: Atomic # 1 Polarization: 4.36 SS G_CDS: -5.28 Total: -0.92 kcal Atomic # 6 Polarization: 18.89 SS G_CDS: 1.08 Total: 19.97 kcal Atomic # 7 Polarization: -47.89 SS G_CDS: -0.40 Total: -48.29 kcal Atomic # 8 Polarization: -30.87 SS G_CDS: -0.71 Total: -31.57 kcal Atomic # 14 Polarization: 21.61 SS G_CDS: -5.02 Total: 16.59 kcal Total LS contribution 4.61 Total: 4.61 kcal Total: -33.89 -5.72 -39.61 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900568365.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -42.273 kcal (2) G-P(sol) polarization free energy of solvation -33.892 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -76.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.718 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.609 kcal (6) G-S(sol) free energy of system = (1) + (5) -81.882 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds