Wall clock time and date at job start Mon Mar 30 2020 02:22:58 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52996 * 1 3 3 H 1.09001 * 109.47287 * 2 1 4 4 C 1.50697 * 109.47090 * 239.99485 * 2 1 3 5 5 H 1.08004 * 120.00079 * 245.00874 * 4 2 1 6 6 C 1.37878 * 119.99712 * 65.01696 * 4 2 1 7 7 N 1.31511 * 120.00487 * 6.44934 * 6 4 2 8 8 Si 1.86801 * 119.99756 * 186.45111 * 6 4 2 9 9 H 1.48508 * 109.46888 * 94.98611 * 8 6 4 10 10 H 1.48499 * 109.47448 * 214.98724 * 8 6 4 11 11 H 1.48503 * 109.47406 * 334.99261 * 8 6 4 12 12 N 1.46506 * 109.47084 * 119.99394 * 2 1 3 13 13 C 1.46499 * 119.99563 * 65.83311 * 12 2 1 14 14 C 1.34774 * 120.00261 * 245.83283 * 12 2 1 15 15 O 1.21277 * 120.00080 * 184.89478 * 14 12 2 16 16 C 1.50701 * 119.99968 * 4.89204 * 14 12 2 17 17 H 1.09008 * 109.41349 * 44.12410 * 16 14 12 18 18 O 1.42963 * 109.41447 * 163.98772 * 16 14 12 19 19 C 1.43244 * 112.98484 * 169.70058 * 18 16 14 20 20 C 1.53019 * 108.67174 * 291.63890 * 19 18 16 21 21 N 1.46086 * 109.92366 * 49.16526 * 20 19 18 22 22 C 1.46504 * 118.72968 * 161.61975 * 21 20 19 23 23 C 1.33767 * 122.51472 * 341.57513 * 21 20 19 24 24 O 1.21277 * 118.76582 * 181.93401 * 23 21 20 25 25 H 1.09004 * 109.47055 * 294.24994 * 1 2 3 26 26 H 1.09001 * 109.47466 * 54.24843 * 1 2 3 27 27 H 1.08997 * 109.47270 * 174.25154 * 1 2 3 28 28 H 0.96991 * 120.00267 * 180.02562 * 7 6 4 29 29 H 1.09007 * 109.46951 * 85.69619 * 13 12 2 30 30 H 1.09000 * 109.47014 * 205.68824 * 13 12 2 31 31 H 1.08994 * 109.47628 * 325.69697 * 13 12 2 32 32 H 1.09000 * 109.60432 * 51.39434 * 19 18 16 33 33 H 1.08999 * 109.60442 * 171.71583 * 19 18 16 34 34 H 1.09007 * 109.39555 * 169.30515 * 20 19 18 35 35 H 1.09005 * 109.39311 * 289.02022 * 20 19 18 36 36 H 1.09000 * 109.46960 * 89.99681 * 22 21 20 37 37 H 1.08996 * 109.47371 * 209.99688 * 22 21 20 38 38 H 1.08998 * 109.47179 * 330.00183 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7105 -1.2304 5 1 2.5848 -1.6334 -1.1333 6 6 1.7866 -0.1823 -2.4800 7 7 1.2267 1.0022 -2.5949 8 14 2.2489 -1.1491 -4.0101 9 1 1.0680 -1.9114 -4.4894 10 1 2.6972 -0.2120 -5.0712 11 1 3.3488 -2.0927 -3.6859 12 7 2.0183 -0.6905 1.1963 13 6 1.7727 -2.1248 1.3656 14 6 2.6934 -0.0063 2.1410 15 8 3.1744 -0.5929 3.0872 16 6 2.8508 1.4877 2.0214 17 1 1.8986 1.9300 1.7282 18 8 3.2562 2.0253 3.2825 19 6 3.6549 3.3989 3.2030 20 6 4.9583 3.4853 2.4061 21 7 4.8328 2.7286 1.1628 22 6 5.7779 2.9976 0.0762 23 6 3.8885 1.7991 0.9790 24 8 3.8685 1.1865 -0.0675 25 1 -0.3633 0.4221 0.9370 26 1 -0.3634 0.6004 -0.8340 27 1 -0.3633 -1.0225 -0.1029 28 1 1.0535 1.3736 -3.4740 29 1 2.5562 -2.6897 0.8603 30 1 1.7747 -2.3709 2.4275 31 1 0.8048 -2.3811 0.9350 32 1 2.8794 3.9761 2.6994 33 1 3.8104 3.7933 4.2071 34 1 5.1727 4.5287 2.1748 35 1 5.7738 3.0728 3.0002 36 1 6.6457 2.3462 0.1798 37 1 5.2937 2.8081 -0.8818 38 1 6.0976 4.0387 0.1221 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900568365.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:22:58 Heat of formation + Delta-G solvation = -106.027767 kcal Electronic energy + Delta-G solvation = -22692.192250 eV Core-core repulsion = 19342.320377 eV Total energy + Delta-G solvation = -3349.871873 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.53 seconds Orbital eigenvalues (eV) -42.18723 -40.22291 -38.83246 -37.25496 -36.38500 -34.45007 -31.61837 -31.08376 -30.39718 -28.13309 -27.14765 -26.20742 -24.72012 -23.36502 -20.75021 -19.98604 -19.23788 -18.49680 -18.13526 -17.68062 -16.98534 -16.61764 -16.43917 -16.12468 -15.72854 -15.41915 -15.18618 -14.70905 -14.43018 -14.13637 -13.79779 -13.68989 -13.47495 -13.33414 -13.15173 -13.02008 -12.87872 -12.73801 -12.49989 -12.34727 -12.12267 -11.87882 -11.68530 -11.19624 -10.81765 -10.49176 -10.24397 -9.72202 -9.41480 -8.06119 -6.09481 1.19857 1.40365 1.41816 1.42308 1.51343 2.01081 2.02783 2.48056 2.88755 3.26715 3.28106 3.49283 3.79963 3.87705 4.17559 4.28694 4.47325 4.49414 4.58691 4.64445 4.67888 4.76166 4.84528 4.91014 4.91973 4.93334 5.04421 5.33888 5.38265 5.54366 5.69953 5.82268 5.99206 6.25492 6.25697 6.62457 6.86731 7.06635 7.16033 7.54833 9.02075 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.019117 B = 0.008169 C = 0.006587 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1464.309502 B = 3426.971033 C = 4249.732019 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C 0.257 3.743 3 H 0.056 0.944 4 C -0.504 4.504 5 H 0.040 0.960 6 C 0.029 3.971 7 N -0.911 5.911 8 Si 0.944 3.056 9 H -0.271 1.271 10 H -0.287 1.287 11 H -0.282 1.282 12 N -0.582 5.582 13 C 0.097 3.903 14 C 0.520 3.480 15 O -0.578 6.578 16 C 0.073 3.927 17 H 0.117 0.883 18 O -0.366 6.366 19 C 0.031 3.969 20 C 0.075 3.925 21 N -0.612 5.612 22 C 0.085 3.915 23 C 0.470 3.530 24 O -0.512 6.512 25 H 0.035 0.965 26 H 0.060 0.940 27 H 0.042 0.958 28 H 0.259 0.741 29 H 0.041 0.959 30 H 0.071 0.929 31 H 0.083 0.917 32 H 0.075 0.925 33 H 0.157 0.843 34 H 0.128 0.872 35 H 0.082 0.918 36 H 0.053 0.947 37 H 0.050 0.950 38 H 0.112 0.888 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.380 8.981 8.786 13.305 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.199 4.199 2 C 0.156 3.844 3 H 0.073 0.927 4 C -0.543 4.543 5 H 0.059 0.941 6 C -0.170 4.170 7 N -0.551 5.551 8 Si 0.771 3.229 9 H -0.197 1.197 10 H -0.213 1.213 11 H -0.208 1.208 12 N -0.312 5.312 13 C -0.045 4.045 14 C 0.305 3.695 15 O -0.459 6.459 16 C 0.009 3.991 17 H 0.134 0.866 18 O -0.284 6.284 19 C -0.045 4.045 20 C -0.047 4.047 21 N -0.347 5.347 22 C -0.057 4.057 23 C 0.255 3.745 24 O -0.387 6.387 25 H 0.054 0.946 26 H 0.079 0.921 27 H 0.061 0.939 28 H 0.068 0.932 29 H 0.060 0.940 30 H 0.090 0.910 31 H 0.102 0.898 32 H 0.094 0.906 33 H 0.175 0.825 34 H 0.146 0.854 35 H 0.100 0.900 36 H 0.072 0.928 37 H 0.069 0.931 38 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges 4.538 8.354 8.729 12.907 hybrid contribution 0.256 -0.432 -1.394 1.481 sum 4.794 7.922 7.335 11.813 Atomic orbital electron populations 1.22009 0.97661 1.00636 0.99617 1.19091 0.90806 0.93965 0.80492 0.92678 1.21146 1.34269 1.07678 0.91184 0.94138 1.25323 0.95483 0.95408 1.00779 1.69990 1.44854 1.16362 1.23848 0.85774 0.78292 0.78646 0.80174 1.19681 1.21272 1.20759 1.48193 1.52469 1.10117 1.20404 1.21495 1.01603 0.80034 1.01393 1.19805 0.78923 0.88326 0.82413 1.90585 1.50051 1.70735 1.34555 1.21896 0.98390 0.93975 0.84833 0.86563 1.88243 1.86042 1.28207 1.25899 1.23534 0.95221 0.81105 1.04656 1.22500 0.99653 0.98705 0.83797 1.47464 1.31123 1.38432 1.17729 1.21761 0.91544 1.02921 0.89495 1.20540 0.83807 0.81560 0.88629 1.91074 1.71873 1.48596 1.27171 0.94563 0.92123 0.93881 0.93174 0.94006 0.91031 0.89800 0.90625 0.82513 0.85405 0.90025 0.92800 0.93079 0.86923 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -6.37 8.93 71.98 0.64 -5.73 16 2 C 0.26 12.80 1.31 44.24 0.06 12.86 16 3 H 0.06 2.95 4.06 -2.39 -0.01 2.94 16 4 C -0.50 -27.87 7.36 25.60 0.19 -27.68 16 5 H 0.04 2.32 7.10 -2.91 -0.02 2.30 16 6 C 0.03 1.63 5.27 84.66 0.45 2.07 16 7 N -0.91 -51.30 12.03 21.45 0.26 -51.04 16 8 Si 0.94 44.74 29.54 68.60 2.03 46.77 16 9 H -0.27 -12.26 7.11 99.48 0.71 -11.56 16 10 H -0.29 -13.43 7.11 99.48 0.71 -12.72 16 11 H -0.28 -13.56 7.11 99.48 0.71 -12.86 16 12 N -0.58 -27.01 2.73 -826.80 -2.26 -29.27 16 13 C 0.10 3.97 9.50 127.77 1.21 5.18 16 14 C 0.52 23.99 6.75 87.66 0.59 24.58 16 15 O -0.58 -28.76 16.13 15.54 0.25 -28.51 16 16 C 0.07 2.89 2.51 28.99 0.07 2.96 16 17 H 0.12 4.38 7.25 -2.38 -0.02 4.36 16 18 O -0.37 -12.13 10.07 -130.42 -1.31 -13.44 16 19 C 0.03 0.61 6.90 71.99 0.50 1.10 16 20 C 0.07 1.41 6.67 86.46 0.58 1.99 16 21 N -0.61 -18.42 3.23 -849.73 -2.74 -21.16 16 22 C 0.08 2.22 10.31 127.77 1.32 3.54 16 23 C 0.47 19.18 6.81 87.70 0.60 19.77 16 24 O -0.51 -25.96 12.08 -3.02 -0.04 -26.00 16 25 H 0.04 1.44 8.14 -2.38 -0.02 1.42 16 26 H 0.06 2.98 6.88 -2.39 -0.02 2.96 16 27 H 0.04 1.85 7.12 -2.39 -0.02 1.84 16 28 H 0.26 13.99 8.31 -92.71 -0.77 13.22 16 29 H 0.04 1.75 7.80 -2.38 -0.02 1.73 16 30 H 0.07 2.73 7.37 -2.39 -0.02 2.71 16 31 H 0.08 3.13 6.87 -2.39 -0.02 3.11 16 32 H 0.08 1.34 8.10 -2.39 -0.02 1.32 16 33 H 0.16 1.81 8.14 -2.39 -0.02 1.79 16 34 H 0.13 1.32 7.99 -2.38 -0.02 1.30 16 35 H 0.08 1.44 8.14 -2.38 -0.02 1.42 16 36 H 0.05 1.39 8.14 -2.39 -0.02 1.37 16 37 H 0.05 1.70 7.29 -2.39 -0.02 1.68 16 38 H 0.11 1.85 7.93 -2.39 -0.02 1.83 16 Total: -1.00 -75.29 306.10 3.45 -71.84 By element: Atomic # 1 Polarization: 9.11 SS G_CDS: 1.06 Total: 10.17 kcal Atomic # 6 Polarization: 34.44 SS G_CDS: 6.20 Total: 40.65 kcal Atomic # 7 Polarization: -96.73 SS G_CDS: -4.74 Total: -101.47 kcal Atomic # 8 Polarization: -66.85 SS G_CDS: -1.10 Total: -67.95 kcal Atomic # 14 Polarization: 44.74 SS G_CDS: 2.03 Total: 46.77 kcal Total: -75.29 3.45 -71.84 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900568365.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -34.191 kcal (2) G-P(sol) polarization free energy of solvation -75.288 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -109.478 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.451 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.837 kcal (6) G-S(sol) free energy of system = (1) + (5) -106.028 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.53 seconds