Wall clock time and date at job start Mon Mar 30 2020 02:23:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46739 * 2 1 4 4 C 1.50701 * 109.47432 * 239.99613 * 2 1 3 5 5 H 1.07995 * 120.00171 * 240.00326 * 4 2 1 6 6 C 1.37878 * 119.99556 * 59.99978 * 4 2 1 7 7 N 1.31514 * 120.00424 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99740 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46975 * 59.99881 * 8 6 4 10 10 H 1.48497 * 109.47385 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47140 * 300.00418 * 8 6 4 12 12 N 1.46499 * 109.46678 * 119.99517 * 2 1 3 13 13 C 1.46503 * 119.99929 * 53.81816 * 12 2 1 14 14 C 1.34772 * 120.00182 * 233.81272 * 12 2 1 15 15 O 1.21287 * 120.00256 * 183.90185 * 14 12 2 16 16 C 1.50698 * 119.99838 * 3.91038 * 14 12 2 17 17 H 1.09000 * 109.41608 * 311.97115 * 16 14 12 18 18 O 1.42970 * 109.41643 * 192.11494 * 16 14 12 19 19 C 1.43246 * 112.99237 * 190.36424 * 18 16 14 20 20 C 1.53019 * 108.66612 * 68.36215 * 19 18 16 21 21 N 1.46096 * 109.92483 * 310.83777 * 20 19 18 22 22 C 1.46506 * 118.72850 * 198.33715 * 21 20 19 23 23 C 1.33870 * 122.54110 * 18.61998 * 21 20 19 24 24 O 1.21283 * 118.83291 * 177.86082 * 23 21 20 25 25 H 1.09001 * 109.47212 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47727 * 300.00439 * 1 2 3 27 27 H 1.09006 * 109.46826 * 60.00169 * 1 2 3 28 28 H 0.96998 * 120.00134 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47332 * 274.91118 * 13 12 2 30 30 H 1.09004 * 109.47015 * 34.91514 * 13 12 2 31 31 H 1.09007 * 109.47130 * 154.90823 * 13 12 2 32 32 H 1.09002 * 109.59638 * 308.61189 * 19 18 16 33 33 H 1.08991 * 109.60487 * 188.12096 * 19 18 16 34 34 H 1.09000 * 109.39395 * 190.69972 * 20 19 18 35 35 H 1.08988 * 109.32314 * 70.93149 * 20 19 18 36 36 H 1.09002 * 109.46844 * 90.00066 * 22 21 20 37 37 H 1.09000 * 109.47070 * 330.00512 * 22 21 20 38 38 H 1.08998 * 109.46875 * 210.00175 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3227 -1.1197 -4.0079 9 1 1.8283 -2.5199 -4.0080 10 1 1.8281 -0.4195 -5.2204 11 1 3.8077 -1.1191 -4.0075 12 7 2.0182 -0.6905 1.1963 13 6 1.5562 -2.0475 1.4986 14 6 2.8925 -0.0775 2.0186 15 8 3.3511 -0.6742 2.9698 16 6 3.3003 1.3493 1.7563 17 1 3.5704 1.4618 0.7063 18 8 4.4251 1.6803 2.5743 19 6 4.7313 3.0796 2.5651 20 6 3.6072 3.8316 3.2809 21 7 2.3112 3.4038 2.7595 22 6 1.1423 4.2556 2.9928 23 6 2.1495 2.2608 2.0815 24 8 1.0361 1.9520 1.7129 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8898 27 1 -0.3633 0.5138 -0.8901 28 1 0.7096 1.1617 -3.4844 29 1 0.6125 -1.9974 2.0418 30 1 1.4115 -2.5977 0.5688 31 1 2.3009 -2.5571 2.1101 32 1 4.8084 3.4302 1.5359 33 1 5.6743 3.2510 3.0840 34 1 3.7272 4.9027 3.1180 35 1 3.6551 3.6204 4.3491 36 1 1.0410 4.9661 2.1724 37 1 1.2693 4.7981 3.9296 38 1 0.2471 3.6364 3.0499 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000900568369.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:08 Heat of formation + Delta-G solvation = -86.930503 kcal Electronic energy + Delta-G solvation = -22576.698295 eV Core-core repulsion = 19227.654542 eV Total energy + Delta-G solvation = -3349.043753 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.50 seconds Orbital eigenvalues (eV) -40.80773 -38.58256 -37.53885 -35.40212 -35.17574 -32.58983 -30.42989 -29.20432 -29.00641 -26.75135 -25.19984 -24.77310 -23.71713 -21.39335 -19.38924 -18.50958 -17.87291 -16.80063 -16.61952 -16.20290 -15.67225 -15.18005 -14.80883 -14.53043 -14.33319 -13.99658 -13.91302 -13.11917 -12.97757 -12.66366 -12.47431 -12.16903 -12.15557 -11.85485 -11.57978 -11.26354 -11.17658 -10.99088 -10.82731 -10.51641 -10.42870 -10.14694 -10.11197 -9.35696 -9.03752 -8.99487 -8.65164 -8.42327 -7.54840 -6.08589 -4.18889 2.65466 2.76887 3.26828 3.31557 3.32428 3.38880 3.48834 4.26716 4.40830 4.43943 4.74191 4.97646 5.03238 5.20012 5.23792 5.32191 5.43414 5.48832 5.51919 5.70749 5.87717 6.16351 6.29532 6.34859 6.55394 6.72818 6.83339 7.10211 7.22787 7.36374 7.39523 7.57191 7.75313 8.00845 8.23037 8.36885 8.45676 8.80272 8.99534 9.48569 10.94541 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.020295 B = 0.006935 C = 0.006529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.307711 B = 4036.715129 C = 4287.211963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.139 4.139 2 C 0.263 3.737 3 H 0.053 0.947 4 C -0.538 4.538 5 H 0.060 0.940 6 C 0.067 3.933 7 N -0.884 5.884 8 Si 0.897 3.103 9 H -0.276 1.276 10 H -0.286 1.286 11 H -0.277 1.277 12 N -0.573 5.573 13 C 0.094 3.906 14 C 0.530 3.470 15 O -0.554 6.554 16 C 0.061 3.939 17 H 0.125 0.875 18 O -0.346 6.346 19 C 0.040 3.960 20 C 0.082 3.918 21 N -0.614 5.614 22 C 0.084 3.916 23 C 0.494 3.506 24 O -0.494 6.494 25 H 0.022 0.978 26 H 0.031 0.969 27 H 0.087 0.913 28 H 0.263 0.737 29 H 0.044 0.956 30 H 0.076 0.924 31 H 0.064 0.936 32 H 0.065 0.935 33 H 0.117 0.883 34 H 0.084 0.916 35 H 0.073 0.927 36 H 0.056 0.944 37 H 0.066 0.934 38 H 0.081 0.919 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.691 8.129 8.564 12.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.197 4.197 2 C 0.163 3.837 3 H 0.070 0.930 4 C -0.577 4.577 5 H 0.079 0.921 6 C -0.136 4.136 7 N -0.522 5.522 8 Si 0.724 3.276 9 H -0.201 1.201 10 H -0.212 1.212 11 H -0.202 1.202 12 N -0.303 5.303 13 C -0.048 4.048 14 C 0.314 3.686 15 O -0.434 6.434 16 C -0.002 4.002 17 H 0.142 0.858 18 O -0.263 6.263 19 C -0.037 4.037 20 C -0.042 4.042 21 N -0.351 5.351 22 C -0.059 4.059 23 C 0.280 3.720 24 O -0.367 6.367 25 H 0.041 0.959 26 H 0.050 0.950 27 H 0.106 0.894 28 H 0.073 0.927 29 H 0.062 0.938 30 H 0.094 0.906 31 H 0.082 0.918 32 H 0.084 0.916 33 H 0.135 0.865 34 H 0.103 0.897 35 H 0.091 0.909 36 H 0.075 0.925 37 H 0.085 0.915 38 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges 3.315 7.606 8.783 12.082 hybrid contribution 0.218 0.007 -1.137 1.157 sum 3.532 7.613 7.646 11.354 Atomic orbital electron populations 1.21959 0.97298 0.98844 1.01630 1.19066 0.92461 0.92678 0.79496 0.92982 1.21481 1.32158 1.13484 0.90539 0.92141 1.24889 0.94807 0.94981 0.98880 1.69905 1.35982 1.22517 1.23812 0.86585 0.79210 0.79839 0.81963 1.20132 1.21193 1.20214 1.48094 1.41734 1.15442 1.25007 1.21443 0.98536 0.83553 1.01315 1.19184 0.80153 0.86128 0.83143 1.90621 1.56062 1.66042 1.30674 1.22240 0.85458 0.94521 0.98030 0.85760 1.88286 1.46616 1.23127 1.68275 1.23045 0.97883 0.81701 1.01089 1.22154 0.82910 0.99821 0.99299 1.47345 1.09560 1.21976 1.56212 1.21653 0.89167 0.94471 1.00565 1.20425 0.91154 0.81660 0.78737 1.90862 1.24279 1.72023 1.49548 0.95881 0.95017 0.89417 0.92663 0.93778 0.90565 0.91752 0.91639 0.86469 0.89748 0.90852 0.92522 0.91515 0.90069 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.47 8.45 37.16 0.31 -3.16 16 2 C 0.26 6.61 1.46 -69.08 -0.10 6.51 16 3 H 0.05 1.38 4.42 -51.93 -0.23 1.15 16 4 C -0.54 -14.38 8.12 -34.44 -0.28 -14.66 16 5 H 0.06 1.62 7.69 -52.49 -0.40 1.22 16 6 C 0.07 1.80 5.30 -17.82 -0.09 1.70 16 7 N -0.88 -24.35 11.32 55.43 0.63 -23.72 16 8 Si 0.90 20.72 29.54 -169.99 -5.02 15.70 16 9 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 10 H -0.29 -6.56 7.11 56.52 0.40 -6.15 16 11 H -0.28 -6.36 7.11 56.52 0.40 -5.96 16 12 N -0.57 -13.38 2.64 -175.26 -0.46 -13.85 16 13 C 0.09 1.95 9.37 59.85 0.56 2.51 16 14 C 0.53 12.27 6.79 -10.99 -0.07 12.19 16 15 O -0.55 -13.77 16.03 -14.08 -0.23 -14.00 16 16 C 0.06 1.23 2.52 -29.20 -0.07 1.16 16 17 H 0.13 2.52 7.05 -51.93 -0.37 2.15 16 18 O -0.35 -6.10 10.05 -54.87 -0.55 -6.65 16 19 C 0.04 0.47 6.90 37.17 0.26 0.72 16 20 C 0.08 0.87 6.63 -4.25 -0.03 0.84 16 21 N -0.61 -9.07 3.23 -182.30 -0.59 -9.66 16 22 C 0.08 1.02 10.35 59.85 0.62 1.64 16 23 C 0.49 9.52 6.83 -11.56 -0.08 9.45 16 24 O -0.49 -10.98 10.98 5.56 0.06 -10.92 16 25 H 0.02 0.54 7.54 -51.93 -0.39 0.15 16 26 H 0.03 0.77 6.36 -51.93 -0.33 0.44 16 27 H 0.09 2.37 6.07 -51.93 -0.32 2.06 16 28 H 0.26 6.93 8.31 -40.82 -0.34 6.59 16 29 H 0.04 0.85 8.14 -51.93 -0.42 0.43 16 30 H 0.08 1.55 7.44 -51.93 -0.39 1.16 16 31 H 0.06 1.28 7.23 -51.93 -0.38 0.91 16 32 H 0.07 0.71 8.10 -51.93 -0.42 0.29 16 33 H 0.12 0.96 8.14 -51.93 -0.42 0.54 16 34 H 0.08 0.62 8.13 -51.93 -0.42 0.20 16 35 H 0.07 0.73 8.14 -51.94 -0.42 0.31 16 36 H 0.06 0.64 8.14 -51.93 -0.42 0.22 16 37 H 0.07 0.59 8.04 -51.93 -0.42 0.17 16 38 H 0.08 1.14 7.23 -51.93 -0.38 0.77 16 LS Contribution 303.96 15.07 4.58 4.58 Total: -1.00 -33.07 303.96 -5.82 -38.89 By element: Atomic # 1 Polarization: 5.96 SS G_CDS: -5.26 Total: 0.70 kcal Atomic # 6 Polarization: 17.89 SS G_CDS: 1.02 Total: 18.91 kcal Atomic # 7 Polarization: -46.80 SS G_CDS: -0.42 Total: -47.22 kcal Atomic # 8 Polarization: -30.85 SS G_CDS: -0.72 Total: -31.56 kcal Atomic # 14 Polarization: 20.72 SS G_CDS: -5.02 Total: 15.70 kcal Total LS contribution 4.58 Total: 4.58 kcal Total: -33.07 -5.82 -38.89 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900568369.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -48.038 kcal (2) G-P(sol) polarization free energy of solvation -33.073 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -81.111 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.819 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.892 kcal (6) G-S(sol) free energy of system = (1) + (5) -86.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.50 seconds