Wall clock time and date at job start Mon Mar 30 2020 02:23:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 H 1.08999 * 109.46739 * 2 1 4 4 C 1.50701 * 109.47432 * 239.99613 * 2 1 3 5 5 H 1.07995 * 120.00171 * 240.00326 * 4 2 1 6 6 C 1.37878 * 119.99556 * 59.99978 * 4 2 1 7 7 N 1.31514 * 120.00424 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99740 * 179.97438 * 6 4 2 9 9 H 1.48497 * 109.46975 * 59.99881 * 8 6 4 10 10 H 1.48497 * 109.47385 * 180.02562 * 8 6 4 11 11 H 1.48504 * 109.47140 * 300.00418 * 8 6 4 12 12 N 1.46499 * 109.46678 * 119.99517 * 2 1 3 13 13 C 1.46503 * 119.99929 * 53.81816 * 12 2 1 14 14 C 1.34772 * 120.00182 * 233.81272 * 12 2 1 15 15 O 1.21287 * 120.00256 * 183.90185 * 14 12 2 16 16 C 1.50698 * 119.99838 * 3.91038 * 14 12 2 17 17 H 1.09000 * 109.41608 * 311.97115 * 16 14 12 18 18 O 1.42970 * 109.41643 * 192.11494 * 16 14 12 19 19 C 1.43246 * 112.99237 * 190.36424 * 18 16 14 20 20 C 1.53019 * 108.66612 * 68.36215 * 19 18 16 21 21 N 1.46096 * 109.92483 * 310.83777 * 20 19 18 22 22 C 1.46506 * 118.72850 * 198.33715 * 21 20 19 23 23 C 1.33870 * 122.54110 * 18.61998 * 21 20 19 24 24 O 1.21283 * 118.83291 * 177.86082 * 23 21 20 25 25 H 1.09001 * 109.47212 * 179.97438 * 1 2 3 26 26 H 1.08992 * 109.47727 * 300.00439 * 1 2 3 27 27 H 1.09006 * 109.46826 * 60.00169 * 1 2 3 28 28 H 0.96998 * 120.00134 * 179.97438 * 7 6 4 29 29 H 1.08997 * 109.47332 * 274.91118 * 13 12 2 30 30 H 1.09004 * 109.47015 * 34.91514 * 13 12 2 31 31 H 1.09007 * 109.47130 * 154.90823 * 13 12 2 32 32 H 1.09002 * 109.59638 * 308.61189 * 19 18 16 33 33 H 1.08991 * 109.60487 * 188.12096 * 19 18 16 34 34 H 1.09000 * 109.39395 * 190.69972 * 20 19 18 35 35 H 1.08988 * 109.32314 * 70.93149 * 20 19 18 36 36 H 1.09002 * 109.46844 * 90.00066 * 22 21 20 37 37 H 1.09000 * 109.47070 * 330.00512 * 22 21 20 38 38 H 1.08998 * 109.46875 * 210.00175 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0324 -0.7105 -1.2304 5 1 2.6533 -1.5885 -1.1313 6 6 1.6993 -0.2394 -2.4827 7 7 0.9436 0.8301 -2.6034 8 14 2.3227 -1.1197 -4.0079 9 1 1.8283 -2.5199 -4.0080 10 1 1.8281 -0.4195 -5.2204 11 1 3.8077 -1.1191 -4.0075 12 7 2.0182 -0.6905 1.1963 13 6 1.5562 -2.0475 1.4986 14 6 2.8925 -0.0775 2.0186 15 8 3.3511 -0.6742 2.9698 16 6 3.3003 1.3493 1.7563 17 1 3.5704 1.4618 0.7063 18 8 4.4251 1.6803 2.5743 19 6 4.7313 3.0796 2.5651 20 6 3.6072 3.8316 3.2809 21 7 2.3112 3.4038 2.7595 22 6 1.1423 4.2556 2.9928 23 6 2.1495 2.2608 2.0815 24 8 1.0361 1.9520 1.7129 25 1 -0.3634 -1.0277 -0.0005 26 1 -0.3634 0.5138 0.8898 27 1 -0.3633 0.5138 -0.8901 28 1 0.7096 1.1617 -3.4844 29 1 0.6125 -1.9974 2.0418 30 1 1.4115 -2.5977 0.5688 31 1 2.3009 -2.5571 2.1101 32 1 4.8084 3.4302 1.5359 33 1 5.6743 3.2510 3.0840 34 1 3.7272 4.9027 3.1180 35 1 3.6551 3.6204 4.3491 36 1 1.0410 4.9661 2.1724 37 1 1.2693 4.7981 3.9296 38 1 0.2471 3.6364 3.0499 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000900568369.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 02:23:07 Heat of formation + Delta-G solvation = -109.983887 kcal Electronic energy + Delta-G solvation = -22577.697965 eV Core-core repulsion = 19227.654542 eV Total energy + Delta-G solvation = -3350.043423 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -42.23257 -40.24961 -38.89798 -37.28364 -36.43783 -34.59054 -31.68404 -30.99156 -30.43935 -28.15800 -27.25143 -26.22813 -24.77357 -23.31946 -20.83859 -20.01714 -19.28775 -18.58304 -18.08044 -17.86793 -17.12796 -16.66966 -16.44349 -16.14879 -15.77034 -15.46377 -15.20521 -14.76564 -14.43199 -14.12910 -13.82394 -13.63792 -13.52060 -13.39774 -13.08937 -13.03733 -12.82193 -12.72489 -12.49705 -12.26493 -12.11744 -12.01104 -11.74435 -11.21691 -10.83893 -10.59179 -10.37732 -9.79874 -9.42542 -8.12306 -6.30340 1.15090 1.34491 1.44321 1.44955 1.52958 1.93301 1.99997 2.41932 2.85724 3.13547 3.22230 3.47203 3.75355 3.91578 4.15229 4.30590 4.42145 4.49757 4.60135 4.63827 4.65985 4.73448 4.83020 4.90652 4.91214 5.07741 5.17406 5.30998 5.42371 5.52555 5.64827 5.79237 6.01447 6.16945 6.21054 6.54377 6.77790 6.95652 7.13599 7.41497 8.89819 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.020295 B = 0.006935 C = 0.006529 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1379.307711 B = 4036.715129 C = 4287.211963 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.123 4.123 2 C 0.274 3.726 3 H 0.038 0.962 4 C -0.555 4.555 5 H 0.055 0.945 6 C 0.026 3.974 7 N -0.908 5.908 8 Si 0.958 3.042 9 H -0.272 1.272 10 H -0.281 1.281 11 H -0.273 1.273 12 N -0.580 5.580 13 C 0.092 3.908 14 C 0.520 3.480 15 O -0.577 6.577 16 C 0.069 3.931 17 H 0.113 0.887 18 O -0.366 6.366 19 C 0.028 3.972 20 C 0.076 3.924 21 N -0.608 5.608 22 C 0.081 3.919 23 C 0.486 3.514 24 O -0.537 6.537 25 H 0.026 0.974 26 H 0.030 0.970 27 H 0.066 0.934 28 H 0.266 0.734 29 H 0.055 0.945 30 H 0.077 0.923 31 H 0.069 0.931 32 H 0.071 0.929 33 H 0.157 0.843 34 H 0.130 0.870 35 H 0.088 0.912 36 H 0.066 0.934 37 H 0.108 0.892 38 H 0.055 0.945 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 4.758 9.412 9.007 13.869 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.182 4.182 2 C 0.173 3.827 3 H 0.055 0.945 4 C -0.593 4.593 5 H 0.073 0.927 6 C -0.174 4.174 7 N -0.546 5.546 8 Si 0.783 3.217 9 H -0.197 1.197 10 H -0.206 1.206 11 H -0.198 1.198 12 N -0.310 5.310 13 C -0.050 4.050 14 C 0.306 3.694 15 O -0.459 6.459 16 C 0.005 3.995 17 H 0.130 0.870 18 O -0.284 6.284 19 C -0.048 4.048 20 C -0.046 4.046 21 N -0.342 5.342 22 C -0.061 4.061 23 C 0.272 3.728 24 O -0.414 6.414 25 H 0.045 0.955 26 H 0.048 0.952 27 H 0.084 0.916 28 H 0.075 0.925 29 H 0.073 0.927 30 H 0.096 0.904 31 H 0.088 0.912 32 H 0.090 0.910 33 H 0.175 0.825 34 H 0.147 0.853 35 H 0.106 0.894 36 H 0.085 0.915 37 H 0.127 0.873 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 4.408 8.931 9.258 13.598 hybrid contribution -0.058 -0.293 -1.185 1.222 sum 4.350 8.638 8.073 12.598 Atomic orbital electron populations 1.21763 0.97398 0.98597 1.00404 1.18787 0.92172 0.91995 0.79728 0.94459 1.21680 1.32510 1.13573 0.91566 0.92702 1.25597 0.94824 0.95555 1.01465 1.70020 1.36564 1.23476 1.24507 0.85616 0.78701 0.78810 0.78547 1.19680 1.20603 1.19820 1.48153 1.41884 1.16254 1.24685 1.21544 0.99205 0.82639 1.01615 1.19745 0.79579 0.87457 0.82607 1.90582 1.56856 1.67008 1.31471 1.21907 0.86914 0.92957 0.97768 0.87017 1.88257 1.45472 1.27001 1.67703 1.23551 1.00048 0.78771 1.02444 1.22516 0.80305 1.02108 0.99654 1.47508 1.11997 1.20516 1.54204 1.21844 0.87315 0.93830 1.03075 1.20348 0.90157 0.82931 0.79401 1.90823 1.25433 1.73399 1.51786 0.95466 0.95152 0.91559 0.92511 0.92653 0.90421 0.91187 0.91044 0.82528 0.85252 0.89372 0.91548 0.87331 0.92614 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -6.30 8.45 71.98 0.61 -5.69 16 2 C 0.27 14.10 1.46 44.25 0.06 14.17 16 3 H 0.04 2.05 4.42 -2.39 -0.01 2.04 16 4 C -0.55 -30.02 8.12 25.60 0.21 -29.81 16 5 H 0.05 2.97 7.69 -2.91 -0.02 2.94 16 6 C 0.03 1.41 5.30 84.65 0.45 1.86 16 7 N -0.91 -50.41 11.32 21.45 0.24 -50.17 16 8 Si 0.96 42.31 29.54 68.60 2.03 44.34 16 9 H -0.27 -11.76 7.11 99.48 0.71 -11.05 16 10 H -0.28 -12.07 7.11 99.48 0.71 -11.36 16 11 H -0.27 -11.83 7.11 99.48 0.71 -11.12 16 12 N -0.58 -27.67 2.64 -826.78 -2.18 -29.85 16 13 C 0.09 3.85 9.37 127.77 1.20 5.05 16 14 C 0.52 24.58 6.79 87.66 0.59 25.18 16 15 O -0.58 -29.07 16.03 15.72 0.25 -28.82 16 16 C 0.07 2.79 2.52 28.99 0.07 2.87 16 17 H 0.11 4.71 7.05 -2.39 -0.02 4.69 16 18 O -0.37 -12.61 10.05 -130.21 -1.31 -13.92 16 19 C 0.03 0.57 6.90 71.99 0.50 1.06 16 20 C 0.08 1.33 6.63 86.46 0.57 1.91 16 21 N -0.61 -16.82 3.23 -849.56 -2.75 -19.56 16 22 C 0.08 1.79 10.35 127.77 1.32 3.12 16 23 C 0.49 18.80 6.83 87.69 0.60 19.40 16 24 O -0.54 -24.54 10.98 -3.04 -0.03 -24.57 16 25 H 0.03 1.30 7.54 -2.39 -0.02 1.28 16 26 H 0.03 1.52 6.36 -2.39 -0.02 1.50 16 27 H 0.07 3.67 6.07 -2.38 -0.01 3.66 16 28 H 0.27 14.01 8.31 -92.71 -0.77 13.24 16 29 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 30 H 0.08 3.17 7.44 -2.38 -0.02 3.16 16 31 H 0.07 2.81 7.23 -2.38 -0.02 2.79 16 32 H 0.07 1.39 8.10 -2.39 -0.02 1.37 16 33 H 0.16 1.94 8.14 -2.39 -0.02 1.92 16 34 H 0.13 1.21 8.13 -2.39 -0.02 1.19 16 35 H 0.09 1.38 8.14 -2.39 -0.02 1.36 16 36 H 0.07 1.36 8.14 -2.39 -0.02 1.34 16 37 H 0.11 1.50 8.04 -2.39 -0.02 1.48 16 38 H 0.05 1.55 7.23 -2.39 -0.02 1.53 16 Total: -1.00 -72.86 303.96 3.50 -69.36 By element: Atomic # 1 Polarization: 13.03 SS G_CDS: 1.06 Total: 14.09 kcal Atomic # 6 Polarization: 32.92 SS G_CDS: 6.18 Total: 39.10 kcal Atomic # 7 Polarization: -94.90 SS G_CDS: -4.69 Total: -99.59 kcal Atomic # 8 Polarization: -66.22 SS G_CDS: -1.09 Total: -67.31 kcal Atomic # 14 Polarization: 42.31 SS G_CDS: 2.03 Total: 44.34 kcal Total: -72.86 3.50 -69.36 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000900568369.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.622 kcal (2) G-P(sol) polarization free energy of solvation -72.861 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -113.484 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.500 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.361 kcal (6) G-S(sol) free energy of system = (1) + (5) -109.984 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds