Wall clock time and date at job start Mon Mar 30 2020 01:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.50699 * 109.47078 * 184.99974 * 3 2 1 6 6 H 1.08000 * 119.99792 * 239.99917 * 5 3 2 7 7 C 1.37878 * 119.99902 * 59.99463 * 5 3 2 8 8 N 1.31515 * 120.00126 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99745 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47319 * 60.00570 * 9 7 5 11 11 H 1.48503 * 109.46734 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47266 * 300.00384 * 9 7 5 13 13 N 1.46505 * 109.47212 * 64.99775 * 3 2 1 14 14 C 1.34769 * 119.99798 * 274.99913 * 13 3 2 15 15 O 1.21280 * 120.00742 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99510 * 179.97438 * 14 13 3 17 17 H 1.08999 * 109.41597 * 305.00256 * 16 14 13 18 18 O 1.42971 * 109.41341 * 185.13789 * 16 14 13 19 19 C 1.43231 * 113.00051 * 190.22972 * 18 16 14 20 20 C 1.53021 * 108.59822 * 68.48156 * 19 18 16 21 21 N 1.46096 * 109.92134 * 310.80397 * 20 19 18 22 22 C 1.46505 * 118.72462 * 198.38072 * 21 20 19 23 23 C 1.33866 * 122.54373 * 18.35777 * 21 20 19 24 24 O 1.21273 * 118.83239 * 178.11921 * 23 21 20 25 25 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 26 26 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 27 27 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 29 29 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 30 30 H 0.96999 * 120.00073 * 179.97438 * 8 7 5 31 31 H 0.97005 * 119.99239 * 94.99888 * 13 3 2 32 32 H 1.08998 * 109.66731 * 308.73162 * 19 18 16 33 33 H 1.09003 * 109.74489 * 188.27821 * 19 18 16 34 34 H 1.08993 * 109.39716 * 190.66146 * 20 19 18 35 35 H 1.09007 * 109.39429 * 70.93638 * 20 19 18 36 36 H 1.08994 * 109.46858 * 179.97438 * 22 21 20 37 37 H 1.09001 * 109.46774 * 299.97819 * 22 21 20 38 38 H 1.09000 * 109.47032 * 59.98068 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5967 0.1450 -0.2342 11 1 6.3978 0.2163 -2.6502 12 1 6.5006 2.2797 -1.3807 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3395 2.6320 0.4344 16 6 0.0364 3.3377 2.6548 17 1 0.1529 2.6367 3.4813 18 8 -1.3296 3.7515 2.5715 19 6 -1.7237 4.6023 3.6542 20 6 -0.9965 5.9412 3.5124 21 7 0.4301 5.7124 3.2961 22 6 1.3645 6.8147 3.5373 23 6 0.9165 4.5344 2.8865 24 8 2.1094 4.4289 2.6952 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.8292 -0.0607 -2.9502 31 1 2.2720 2.1231 1.9978 32 1 -1.4535 4.1380 4.6027 33 1 -2.8009 4.7658 3.6209 34 1 -1.1355 6.5267 4.4212 35 1 -1.4080 6.4885 2.6643 36 1 2.3814 6.4806 3.3314 37 1 1.1170 7.6505 2.8830 38 1 1.2903 7.1329 4.5772 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907386027.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:48 Heat of formation + Delta-G solvation = -102.805149 kcal Electronic energy + Delta-G solvation = -21902.905347 eV Core-core repulsion = 18553.173217 eV Total energy + Delta-G solvation = -3349.732129 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.49 seconds Orbital eigenvalues (eV) -40.95878 -38.63903 -37.75420 -35.50591 -34.87806 -32.31113 -31.08867 -30.39820 -29.02365 -26.99877 -25.73652 -23.94070 -22.93318 -20.73272 -19.39766 -19.21860 -17.96485 -17.58924 -16.84603 -16.00768 -15.85531 -15.28541 -15.18047 -14.61045 -14.35202 -14.02620 -14.00708 -13.30360 -13.12822 -12.85910 -12.60436 -12.33754 -12.25839 -11.80521 -11.50745 -11.39440 -11.17594 -10.91749 -10.74882 -10.73553 -10.25795 -10.10705 -9.57212 -9.46825 -9.02375 -8.96002 -8.90391 -8.41465 -7.74935 -6.04034 -4.12066 2.34095 2.58771 3.27507 3.32795 3.36945 3.37814 3.41415 4.18563 4.25677 4.44801 4.51466 4.77780 4.88824 5.05683 5.16919 5.26668 5.27007 5.29631 5.41484 5.51533 5.71980 6.11147 6.44952 6.51575 6.63207 6.71770 7.09668 7.13129 7.25706 7.42176 7.49798 7.70112 7.81092 7.93703 7.98768 8.24684 8.72131 8.85473 9.15447 9.54041 11.01573 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.023846 B = 0.005746 C = 0.004811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.900306 B = 4871.581858 C = 5818.556765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.138 4.138 2 C -0.128 4.128 3 C 0.272 3.728 4 H 0.049 0.951 5 C -0.529 4.529 6 H 0.063 0.937 7 C 0.066 3.934 8 N -0.885 5.885 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.277 1.277 13 N -0.686 5.686 14 C 0.519 3.481 15 O -0.524 6.524 16 C 0.056 3.944 17 H 0.113 0.887 18 O -0.338 6.338 19 C 0.040 3.960 20 C 0.080 3.920 21 N -0.611 5.611 22 C 0.074 3.926 23 C 0.496 3.504 24 O -0.513 6.513 25 H 0.038 0.962 26 H 0.050 0.950 27 H 0.024 0.976 28 H 0.101 0.899 29 H 0.032 0.968 30 H 0.264 0.736 31 H 0.395 0.605 32 H 0.063 0.937 33 H 0.120 0.880 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.061 0.939 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.379 9.681 14.515 19.356 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.195 4.195 2 C -0.167 4.167 3 C 0.171 3.829 4 H 0.067 0.933 5 C -0.568 4.568 6 H 0.081 0.919 7 C -0.137 4.137 8 N -0.523 5.523 9 Si 0.729 3.271 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.335 5.335 14 C 0.299 3.701 15 O -0.401 6.401 16 C -0.009 4.009 17 H 0.130 0.870 18 O -0.255 6.255 19 C -0.038 4.038 20 C -0.044 4.044 21 N -0.346 5.346 22 C -0.068 4.068 23 C 0.282 3.718 24 O -0.388 6.388 25 H 0.057 0.943 26 H 0.069 0.931 27 H 0.043 0.957 28 H 0.119 0.881 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.229 0.771 32 H 0.081 0.919 33 H 0.137 0.863 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.079 0.921 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -8.392 9.418 13.361 18.375 hybrid contribution 1.277 0.281 0.624 1.448 sum -7.115 9.699 13.985 18.446 Atomic orbital electron populations 1.21851 0.98304 0.98101 1.01278 1.21956 0.92624 0.99683 1.02433 1.18837 0.94396 0.89063 0.80621 0.93319 1.21216 0.90621 1.38590 1.06339 0.91903 1.24872 0.98575 0.94884 0.95358 1.69887 1.35143 1.37880 1.09358 0.86502 0.84947 0.78302 0.77312 1.20165 1.21201 1.20216 1.46393 1.13508 1.54511 1.19103 1.19132 0.83787 0.80259 0.86884 1.90708 1.51297 1.59244 1.38808 1.22401 0.82683 0.94531 1.01280 0.87017 1.88370 1.23803 1.66925 1.46375 1.23058 1.00913 0.89043 0.90745 1.22179 0.80232 0.99162 1.02784 1.47297 1.07804 1.11962 1.67549 1.21766 0.95734 0.88781 1.00519 1.20532 0.89473 0.84616 0.77146 1.90795 1.15368 1.83092 1.49581 0.94345 0.93093 0.95738 0.88114 0.94904 0.92592 0.77108 0.91851 0.86253 0.89593 0.90489 0.88811 0.92081 0.92140 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.17 8.52 37.16 0.32 -2.85 16 2 C -0.13 -3.21 5.45 -26.73 -0.15 -3.35 16 3 C 0.27 7.20 2.24 -69.08 -0.15 7.04 16 4 H 0.05 1.48 7.58 -51.93 -0.39 1.09 16 5 C -0.53 -14.69 8.73 -34.44 -0.30 -14.99 16 6 H 0.06 1.71 7.74 -52.49 -0.41 1.31 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.73 16 8 N -0.88 -25.43 11.29 55.43 0.63 -24.80 16 9 Si 0.90 21.43 29.54 -169.99 -5.02 16.41 16 10 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 11 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 12 H -0.28 -6.59 7.11 56.52 0.40 -6.18 16 13 N -0.69 -15.53 4.55 -54.93 -0.25 -15.78 16 14 C 0.52 11.19 5.63 -10.99 -0.06 11.13 16 15 O -0.52 -13.06 13.64 -14.32 -0.20 -13.26 16 16 C 0.06 0.91 3.31 -29.20 -0.10 0.82 16 17 H 0.11 1.50 8.14 -51.93 -0.42 1.07 16 18 O -0.34 -5.12 10.02 -55.11 -0.55 -5.67 16 19 C 0.04 0.36 6.90 37.17 0.26 0.62 16 20 C 0.08 0.69 6.69 -4.25 -0.03 0.66 16 21 N -0.61 -7.57 3.23 -182.30 -0.59 -8.15 16 22 C 0.07 0.76 10.58 59.85 0.63 1.39 16 23 C 0.50 8.05 7.13 -11.56 -0.08 7.96 16 24 O -0.51 -9.92 14.36 5.56 0.08 -9.84 16 25 H 0.04 0.86 5.64 -51.93 -0.29 0.56 16 26 H 0.05 1.25 7.85 -51.93 -0.41 0.84 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.07 16 28 H 0.10 2.76 5.95 -51.93 -0.31 2.45 16 29 H 0.03 0.78 8.14 -51.93 -0.42 0.36 16 30 H 0.26 7.22 8.31 -40.82 -0.34 6.88 16 31 H 0.40 8.31 7.61 -40.82 -0.31 8.00 16 32 H 0.06 0.47 8.10 -51.93 -0.42 0.04 16 33 H 0.12 0.74 8.14 -51.93 -0.42 0.32 16 34 H 0.09 0.45 8.13 -51.93 -0.42 0.03 16 35 H 0.08 0.67 8.14 -51.93 -0.42 0.24 16 36 H 0.09 1.16 6.71 -51.93 -0.35 0.82 16 37 H 0.06 0.54 8.14 -51.93 -0.42 0.12 16 38 H 0.06 0.45 8.14 -51.93 -0.42 0.03 16 LS Contribution 309.02 15.07 4.66 4.66 Total: -1.00 -34.19 309.02 -6.41 -40.60 By element: Atomic # 1 Polarization: 11.10 SS G_CDS: -5.40 Total: 5.70 kcal Atomic # 6 Polarization: 9.91 SS G_CDS: 0.24 Total: 10.15 kcal Atomic # 7 Polarization: -48.53 SS G_CDS: -0.21 Total: -48.74 kcal Atomic # 8 Polarization: -28.10 SS G_CDS: -0.67 Total: -28.77 kcal Atomic # 14 Polarization: 21.43 SS G_CDS: -5.02 Total: 16.41 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -34.19 -6.41 -40.60 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907386027.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.205 kcal (2) G-P(sol) polarization free energy of solvation -34.192 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.397 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.600 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.805 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.49 seconds