Wall clock time and date at job start Mon Mar 30 2020 01:22:48 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52997 * 109.47236 * 2 1 4 4 H 1.09002 * 109.47153 * 304.99767 * 3 2 1 5 5 C 1.50699 * 109.47078 * 184.99974 * 3 2 1 6 6 H 1.08000 * 119.99792 * 239.99917 * 5 3 2 7 7 C 1.37878 * 119.99902 * 59.99463 * 5 3 2 8 8 N 1.31515 * 120.00126 * 0.02562 * 7 5 3 9 9 Si 1.86803 * 119.99745 * 180.02562 * 7 5 3 10 10 H 1.48496 * 109.47319 * 60.00570 * 9 7 5 11 11 H 1.48503 * 109.46734 * 180.02562 * 9 7 5 12 12 H 1.48503 * 109.47266 * 300.00384 * 9 7 5 13 13 N 1.46505 * 109.47212 * 64.99775 * 3 2 1 14 14 C 1.34769 * 119.99798 * 274.99913 * 13 3 2 15 15 O 1.21280 * 120.00742 * 0.02562 * 14 13 3 16 16 C 1.50705 * 119.99510 * 179.97438 * 14 13 3 17 17 H 1.08999 * 109.41597 * 305.00256 * 16 14 13 18 18 O 1.42971 * 109.41341 * 185.13789 * 16 14 13 19 19 C 1.43231 * 113.00051 * 190.22972 * 18 16 14 20 20 C 1.53021 * 108.59822 * 68.48156 * 19 18 16 21 21 N 1.46096 * 109.92134 * 310.80397 * 20 19 18 22 22 C 1.46505 * 118.72462 * 198.38072 * 21 20 19 23 23 C 1.33866 * 122.54373 * 18.35777 * 21 20 19 24 24 O 1.21273 * 118.83239 * 178.11921 * 23 21 20 25 25 H 1.09001 * 109.46917 * 300.00567 * 1 2 3 26 26 H 1.09004 * 109.46741 * 59.99889 * 1 2 3 27 27 H 1.09000 * 109.47403 * 180.02562 * 1 2 3 28 28 H 1.09001 * 109.46917 * 239.99433 * 2 1 3 29 29 H 1.09004 * 109.46741 * 120.00111 * 2 1 3 30 30 H 0.96999 * 120.00073 * 179.97438 * 8 7 5 31 31 H 0.97005 * 119.99239 * 94.99888 * 13 3 2 32 32 H 1.08998 * 109.66731 * 308.73162 * 19 18 16 33 33 H 1.09003 * 109.74489 * 188.27821 * 19 18 16 34 34 H 1.08993 * 109.39716 * 190.66146 * 20 19 18 35 35 H 1.09007 * 109.39429 * 70.93638 * 20 19 18 36 36 H 1.08994 * 109.46858 * 179.97438 * 22 21 20 37 37 H 1.09001 * 109.46774 * 299.97819 * 22 21 20 38 38 H 1.09000 * 109.47032 * 59.98068 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6055 1.9815 -0.8418 5 6 3.5419 1.4442 -0.1238 6 1 4.1472 1.8888 0.6523 7 6 4.1433 0.8782 -1.2279 8 7 3.4062 0.3372 -2.1732 9 14 6.0050 0.8798 -1.3810 10 1 6.5967 0.1450 -0.2342 11 1 6.3978 0.2163 -2.6502 12 1 6.5006 2.2797 -1.3807 13 7 1.6525 2.0975 1.2518 14 6 0.4352 2.6644 1.3669 15 8 -0.3395 2.6320 0.4344 16 6 0.0364 3.3377 2.6548 17 1 0.1529 2.6367 3.4813 18 8 -1.3296 3.7515 2.5715 19 6 -1.7237 4.6023 3.6542 20 6 -0.9965 5.9412 3.5124 21 7 0.4301 5.7124 3.2961 22 6 1.3645 6.8147 3.5373 23 6 0.9165 4.5344 2.8865 24 8 2.1094 4.4289 2.6952 25 1 -0.3633 0.5139 0.8899 26 1 -0.3633 0.5139 -0.8900 27 1 -0.3634 -1.0276 0.0005 28 1 1.8933 -0.5139 -0.8899 29 1 1.8933 -0.5139 0.8900 30 1 3.8292 -0.0607 -2.9502 31 1 2.2720 2.1231 1.9978 32 1 -1.4535 4.1380 4.6027 33 1 -2.8009 4.7658 3.6209 34 1 -1.1355 6.5267 4.4212 35 1 -1.4080 6.4885 2.6643 36 1 2.3814 6.4806 3.3314 37 1 1.1170 7.6505 2.8830 38 1 1.2903 7.1329 4.5772 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907386027.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:48 Heat of formation + Delta-G solvation = -128.642916 kcal Electronic energy + Delta-G solvation = -21904.025756 eV Core-core repulsion = 18553.173217 eV Total energy + Delta-G solvation = -3350.852539 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.51 seconds Orbital eigenvalues (eV) -42.15333 -40.29757 -38.88736 -36.98057 -36.43237 -34.32401 -32.94493 -31.41659 -30.22290 -28.84066 -26.95535 -24.93978 -24.77695 -22.46796 -21.25677 -20.36677 -19.34997 -18.97784 -17.99038 -17.70995 -17.18225 -16.86587 -16.56498 -16.18901 -15.68783 -15.51680 -15.17383 -14.73857 -14.58470 -14.29227 -13.87821 -13.57699 -13.46946 -13.34256 -13.17214 -13.08361 -12.91698 -12.67226 -12.34320 -12.18621 -12.06216 -11.76566 -11.58915 -11.08884 -10.74606 -10.58416 -10.50332 -9.87039 -9.67493 -8.16889 -6.33818 1.06856 1.42675 1.44742 1.46257 1.53279 1.93941 2.05466 2.42296 2.96499 3.11290 3.18193 3.71197 3.75480 3.89339 4.15101 4.31109 4.43246 4.49385 4.57365 4.58127 4.68830 4.75050 4.82857 4.91421 5.04241 5.22209 5.24635 5.43084 5.52857 5.58777 5.68039 5.79284 5.91846 6.11370 6.15579 6.71739 6.79008 6.90088 7.29579 7.45904 8.88487 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.023846 B = 0.005746 C = 0.004811 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1173.900306 B = 4871.581858 C = 5818.556765 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.124 4.124 2 C -0.120 4.120 3 C 0.279 3.721 4 H -0.004 1.004 5 C -0.549 4.549 6 H 0.063 0.937 7 C 0.018 3.982 8 N -0.913 5.913 9 Si 0.970 3.030 10 H -0.263 1.263 11 H -0.280 1.280 12 H -0.276 1.276 13 N -0.686 5.686 14 C 0.511 3.489 15 O -0.565 6.565 16 C 0.069 3.931 17 H 0.144 0.856 18 O -0.366 6.366 19 C 0.030 3.970 20 C 0.073 3.927 21 N -0.604 5.604 22 C 0.070 3.930 23 C 0.488 3.512 24 O -0.558 6.558 25 H 0.042 0.958 26 H 0.025 0.975 27 H 0.051 0.949 28 H 0.075 0.925 29 H 0.044 0.956 30 H 0.266 0.734 31 H 0.403 0.597 32 H 0.087 0.913 33 H 0.151 0.849 34 H 0.132 0.868 35 H 0.077 0.923 36 H 0.065 0.935 37 H 0.075 0.925 38 H 0.097 0.903 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.818 10.677 17.009 21.934 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.181 4.181 2 C -0.159 4.159 3 C 0.176 3.824 4 H 0.014 0.986 5 C -0.588 4.588 6 H 0.081 0.919 7 C -0.182 4.182 8 N -0.551 5.551 9 Si 0.795 3.205 10 H -0.188 1.188 11 H -0.206 1.206 12 H -0.202 1.202 13 N -0.335 5.335 14 C 0.295 3.705 15 O -0.445 6.445 16 C 0.005 3.995 17 H 0.161 0.839 18 O -0.285 6.285 19 C -0.045 4.045 20 C -0.048 4.048 21 N -0.338 5.338 22 C -0.071 4.071 23 C 0.274 3.726 24 O -0.437 6.437 25 H 0.061 0.939 26 H 0.044 0.956 27 H 0.070 0.930 28 H 0.094 0.906 29 H 0.063 0.937 30 H 0.076 0.924 31 H 0.239 0.761 32 H 0.105 0.895 33 H 0.169 0.831 34 H 0.150 0.850 35 H 0.096 0.904 36 H 0.084 0.916 37 H 0.093 0.907 38 H 0.116 0.884 Dipole moment (debyes) X Y Z Total from point charges -8.874 10.461 15.913 21.009 hybrid contribution 1.288 0.094 -0.124 1.297 sum -7.586 10.555 15.789 20.451 Atomic orbital electron populations 1.21684 0.96718 0.99463 1.00243 1.21785 0.93946 0.98522 1.01635 1.18448 0.93752 0.89429 0.80747 0.98593 1.21493 0.91395 1.39029 1.06836 0.91857 1.25738 1.03401 0.94249 0.94825 1.70030 1.37092 1.38236 1.09766 0.85431 0.79035 0.78274 0.77782 1.18810 1.20555 1.20181 1.46191 1.14506 1.54758 1.18049 1.19975 0.82625 0.79383 0.88513 1.90677 1.52266 1.60544 1.40977 1.22067 0.83854 0.95120 0.98478 0.83911 1.88337 1.22421 1.68342 1.49351 1.23538 1.02730 0.88281 0.89981 1.22520 0.77656 0.99601 1.05064 1.47486 1.09842 1.10952 1.65502 1.21940 0.93883 0.88146 1.03140 1.20527 0.88802 0.85772 0.77463 1.90774 1.16983 1.83971 1.51971 0.93882 0.95585 0.92998 0.90617 0.93727 0.92438 0.76130 0.89501 0.83144 0.84968 0.90436 0.91615 0.90665 0.88442 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.78 8.52 71.98 0.61 -5.17 16 2 C -0.12 -6.17 5.45 30.59 0.17 -6.00 16 3 C 0.28 15.41 2.24 44.24 0.10 15.51 16 4 H 0.00 -0.25 7.58 -2.39 -0.02 -0.27 16 5 C -0.55 -31.35 8.73 25.60 0.22 -31.13 16 6 H 0.06 3.52 7.74 -2.91 -0.02 3.50 16 7 C 0.02 1.02 5.29 84.65 0.45 1.47 16 8 N -0.91 -53.94 11.29 21.45 0.24 -53.70 16 9 Si 0.97 44.31 29.54 68.60 2.03 46.34 16 10 H -0.26 -11.44 7.11 99.48 0.71 -10.73 16 11 H -0.28 -12.43 7.11 99.48 0.71 -11.72 16 12 H -0.28 -12.54 7.11 99.48 0.71 -11.83 16 13 N -0.69 -32.00 4.55 -446.10 -2.03 -34.03 16 14 C 0.51 22.56 5.63 87.66 0.49 23.06 16 15 O -0.57 -29.26 13.64 15.98 0.22 -29.04 16 16 C 0.07 2.21 3.31 28.99 0.10 2.30 16 17 H 0.14 3.55 8.14 -2.39 -0.02 3.53 16 18 O -0.37 -10.49 10.02 -129.97 -1.30 -11.79 16 19 C 0.03 0.44 6.90 71.99 0.50 0.93 16 20 C 0.07 0.97 6.69 86.46 0.58 1.55 16 21 N -0.60 -13.53 3.23 -849.57 -2.75 -16.27 16 22 C 0.07 1.27 10.58 127.77 1.35 2.62 16 23 C 0.49 15.44 7.13 87.69 0.62 16.06 16 24 O -0.56 -21.84 14.36 -3.01 -0.04 -21.88 16 25 H 0.04 1.94 5.64 -2.39 -0.01 1.93 16 26 H 0.02 1.30 7.85 -2.39 -0.02 1.28 16 27 H 0.05 2.09 8.14 -2.39 -0.02 2.07 16 28 H 0.08 4.29 5.95 -2.39 -0.01 4.28 16 29 H 0.04 2.14 8.14 -2.39 -0.02 2.12 16 30 H 0.27 14.85 8.31 -92.71 -0.77 14.08 16 31 H 0.40 17.37 7.61 -92.70 -0.71 16.66 16 32 H 0.09 0.88 8.10 -2.39 -0.02 0.86 16 33 H 0.15 1.22 8.14 -2.39 -0.02 1.20 16 34 H 0.13 0.62 8.13 -2.39 -0.02 0.60 16 35 H 0.08 1.08 8.14 -2.38 -0.02 1.06 16 36 H 0.06 1.60 6.71 -2.39 -0.02 1.58 16 37 H 0.07 1.15 8.14 -2.39 -0.02 1.13 16 38 H 0.10 1.05 8.14 -2.39 -0.02 1.04 16 Total: -1.00 -78.73 309.02 1.92 -76.81 By element: Atomic # 1 Polarization: 22.01 SS G_CDS: 0.37 Total: 22.37 kcal Atomic # 6 Polarization: 16.01 SS G_CDS: 5.19 Total: 21.20 kcal Atomic # 7 Polarization: -99.47 SS G_CDS: -4.53 Total: -104.00 kcal Atomic # 8 Polarization: -61.59 SS G_CDS: -1.13 Total: -62.72 kcal Atomic # 14 Polarization: 44.31 SS G_CDS: 2.03 Total: 46.34 kcal Total: -78.73 1.92 -76.81 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907386027.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -51.834 kcal (2) G-P(sol) polarization free energy of solvation -78.731 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.565 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.809 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.643 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.51 seconds