Wall clock time and date at job start Mon Mar 30 2020 01:22:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47183 * 2 1 4 4 H 1.09000 * 109.47000 * 54.99320 * 3 2 1 5 5 C 1.50697 * 109.47303 * 174.99866 * 3 2 1 6 6 H 1.07996 * 119.99773 * 119.99450 * 5 3 2 7 7 C 1.37877 * 119.99975 * 299.99866 * 5 3 2 8 8 N 1.31516 * 120.00044 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99981 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46972 * 59.99912 * 9 7 5 11 11 H 1.48492 * 109.47247 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47134 * 300.00119 * 9 7 5 13 13 N 1.46508 * 109.46760 * 295.00035 * 3 2 1 14 14 C 1.34775 * 120.00086 * 85.00193 * 13 3 2 15 15 O 1.21284 * 119.99910 * 359.97438 * 14 13 3 16 16 C 1.50697 * 119.99982 * 179.97438 * 14 13 3 17 17 H 1.09002 * 109.41308 * 304.99807 * 16 14 13 18 18 O 1.42967 * 109.41621 * 185.13681 * 16 14 13 19 19 C 1.43112 * 113.07321 * 190.31541 * 18 16 14 20 20 C 1.53025 * 108.62869 * 68.40248 * 19 18 16 21 21 N 1.46085 * 109.92530 * 310.83908 * 20 19 18 22 22 C 1.46504 * 118.73453 * 198.38207 * 21 20 19 23 23 C 1.33873 * 122.54239 * 18.35811 * 21 20 19 24 24 O 1.21282 * 118.83437 * 178.11304 * 23 21 20 25 25 H 1.09004 * 109.47229 * 300.00328 * 1 2 3 26 26 H 1.08998 * 109.47019 * 60.00373 * 1 2 3 27 27 H 1.08996 * 109.47248 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47117 * 239.99856 * 2 1 3 29 29 H 1.08998 * 109.47019 * 119.99627 * 2 1 3 30 30 H 0.96994 * 119.99847 * 180.02562 * 8 7 5 31 31 H 0.96998 * 119.99853 * 264.99917 * 13 3 2 32 32 H 1.09004 * 109.62439 * 308.66634 * 19 18 16 33 33 H 1.09000 * 109.76414 * 188.22746 * 19 18 16 34 34 H 1.09009 * 109.39148 * 190.70315 * 20 19 18 35 35 H 1.08994 * 109.39672 * 70.97851 * 20 19 18 36 36 H 1.08993 * 109.47693 * 179.97438 * 22 21 20 37 37 H 1.08997 * 109.46566 * 299.98216 * 22 21 20 38 38 H 1.08998 * 109.46850 * 59.97668 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0050 0.8801 1.3812 10 1 6.5004 2.2801 1.3808 11 1 6.3978 0.2158 2.6498 12 1 6.5967 0.1453 0.2344 13 7 1.6524 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3670 15 8 -0.3396 2.6319 -0.4345 16 6 0.0367 3.3385 -2.6546 17 1 0.7781 4.0949 -2.9120 18 8 -1.2398 3.9610 -2.4898 19 6 -1.8019 4.4225 -3.7223 20 6 -2.1692 3.2077 -4.5773 21 7 -1.0419 2.2805 -4.6352 22 6 -1.0113 1.2744 -5.6997 23 6 -0.0352 2.3148 -3.7533 24 8 0.8499 1.4905 -3.8437 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.8293 -0.0611 2.9498 31 1 2.2719 2.1231 -1.9978 32 1 -1.0714 5.0346 -4.2514 33 1 -2.6963 5.0123 -3.5215 34 1 -2.4191 3.5372 -5.5859 35 1 -3.0304 2.7035 -4.1389 36 1 -0.1109 0.6682 -5.6011 37 1 -1.8904 0.6349 -5.6205 38 1 -1.0100 1.7717 -6.6697 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000907386030.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:55 Heat of formation + Delta-G solvation = -103.006694 kcal Electronic energy + Delta-G solvation = -22003.188732 eV Core-core repulsion = 18653.447863 eV Total energy + Delta-G solvation = -3349.740869 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -40.97763 -38.62980 -37.77511 -35.51333 -34.87459 -32.32061 -31.08451 -30.39406 -29.04548 -26.99350 -25.75360 -23.95213 -22.92926 -20.73541 -19.39762 -19.21190 -17.97141 -17.58391 -16.85603 -16.11047 -15.87961 -15.29536 -15.06622 -14.62463 -14.36491 -14.12307 -13.91276 -13.36249 -13.16049 -12.86719 -12.59399 -12.30033 -12.25726 -11.86202 -11.47118 -11.38747 -11.17603 -10.93821 -10.76363 -10.73152 -10.25473 -10.09683 -9.54771 -9.47659 -9.03326 -8.97010 -8.91022 -8.42466 -7.73912 -6.05441 -4.14298 2.32289 2.57159 3.26710 3.31219 3.35820 3.37741 3.39178 4.17651 4.24854 4.43432 4.50524 4.77504 4.87941 5.06321 5.15202 5.25145 5.25727 5.28746 5.41436 5.50845 5.69193 6.09146 6.48390 6.56488 6.63680 6.75436 7.11240 7.16603 7.26686 7.44650 7.50402 7.70580 7.81185 7.91318 7.97622 8.25055 8.71974 8.82810 9.15143 9.52000 11.00030 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.029300 B = 0.005140 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.398066 B = 5446.070979 C = 5571.256739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.135 4.135 2 C -0.126 4.126 3 C 0.272 3.728 4 H 0.050 0.950 5 C -0.532 4.532 6 H 0.061 0.939 7 C 0.067 3.933 8 N -0.883 5.883 9 Si 0.902 3.098 10 H -0.276 1.276 11 H -0.286 1.286 12 H -0.276 1.276 13 N -0.686 5.686 14 C 0.519 3.481 15 O -0.524 6.524 16 C 0.055 3.945 17 H 0.114 0.886 18 O -0.338 6.338 19 C 0.040 3.960 20 C 0.079 3.921 21 N -0.610 5.610 22 C 0.074 3.926 23 C 0.497 3.503 24 O -0.515 6.515 25 H 0.049 0.951 26 H 0.036 0.964 27 H 0.022 0.978 28 H 0.033 0.967 29 H 0.099 0.901 30 H 0.265 0.735 31 H 0.395 0.605 32 H 0.063 0.937 33 H 0.120 0.880 34 H 0.086 0.914 35 H 0.077 0.923 36 H 0.093 0.907 37 H 0.060 0.940 38 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.778 6.397 -15.750 19.611 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.193 4.193 2 C -0.165 4.165 3 C 0.171 3.829 4 H 0.068 0.932 5 C -0.570 4.570 6 H 0.079 0.921 7 C -0.136 4.136 8 N -0.521 5.521 9 Si 0.730 3.270 10 H -0.202 1.202 11 H -0.212 1.212 12 H -0.202 1.202 13 N -0.335 5.335 14 C 0.299 3.701 15 O -0.401 6.401 16 C -0.009 4.009 17 H 0.131 0.869 18 O -0.255 6.255 19 C -0.038 4.038 20 C -0.044 4.044 21 N -0.346 5.346 22 C -0.068 4.068 23 C 0.284 3.716 24 O -0.391 6.391 25 H 0.068 0.932 26 H 0.055 0.945 27 H 0.041 0.959 28 H 0.052 0.948 29 H 0.117 0.883 30 H 0.075 0.925 31 H 0.229 0.771 32 H 0.081 0.919 33 H 0.138 0.862 34 H 0.104 0.896 35 H 0.095 0.905 36 H 0.112 0.888 37 H 0.079 0.921 38 H 0.079 0.921 Dipole moment (debyes) X Y Z Total from point charges -9.920 5.840 -14.710 18.679 hybrid contribution 1.171 0.020 -0.740 1.385 sum -8.749 5.860 -15.450 18.697 Atomic orbital electron populations 1.21819 0.98487 0.97974 1.01006 1.21921 0.92514 0.99751 1.02341 1.18843 0.94282 0.89270 0.80480 0.93183 1.21186 0.90595 1.39045 1.06209 0.92056 1.24873 0.98587 0.94807 0.95370 1.69890 1.35179 1.37638 1.09352 0.86500 0.84884 0.78270 0.77385 1.20202 1.21173 1.20169 1.46397 1.13792 1.54602 1.18743 1.19128 0.83758 0.80362 0.86803 1.90710 1.51198 1.58944 1.39208 1.22407 0.88822 0.94715 0.95005 0.86920 1.88342 1.32043 1.76493 1.28583 1.23041 1.00293 0.94674 0.85746 1.22186 0.89525 0.91170 1.01500 1.47296 1.22446 1.34798 1.30026 1.21763 1.04235 0.91943 0.88853 1.20536 0.82157 0.86174 0.82782 1.90781 1.37458 1.38364 1.72464 0.93195 0.94535 0.95911 0.94793 0.88270 0.92549 0.77101 0.91856 0.86234 0.89583 0.90487 0.88838 0.92093 0.92124 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.27 8.51 37.16 0.32 -2.96 16 2 C -0.13 -3.28 5.45 -26.73 -0.15 -3.43 16 3 C 0.27 7.21 2.24 -69.08 -0.15 7.05 16 4 H 0.05 1.50 7.58 -51.93 -0.39 1.11 16 5 C -0.53 -14.55 8.73 -34.44 -0.30 -14.85 16 6 H 0.06 1.61 7.74 -52.49 -0.41 1.20 16 7 C 0.07 1.83 5.29 -17.82 -0.09 1.74 16 8 N -0.88 -25.28 11.29 55.43 0.63 -24.65 16 9 Si 0.90 21.10 29.54 -169.99 -5.02 16.08 16 10 H -0.28 -6.39 7.11 56.52 0.40 -5.98 16 11 H -0.29 -6.65 7.11 56.52 0.40 -6.24 16 12 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 13 N -0.69 -15.54 4.55 -54.93 -0.25 -15.79 16 14 C 0.52 11.20 5.63 -10.99 -0.06 11.13 16 15 O -0.52 -13.07 13.64 -14.33 -0.20 -13.26 16 16 C 0.06 0.90 3.31 -29.21 -0.10 0.81 16 17 H 0.11 1.53 8.14 -51.93 -0.42 1.10 16 18 O -0.34 -5.13 10.02 -55.11 -0.55 -5.68 16 19 C 0.04 0.36 6.90 37.17 0.26 0.62 16 20 C 0.08 0.68 6.69 -4.25 -0.03 0.65 16 21 N -0.61 -7.42 3.23 -182.30 -0.59 -8.01 16 22 C 0.07 0.74 10.58 59.85 0.63 1.37 16 23 C 0.50 7.93 7.13 -11.56 -0.08 7.85 16 24 O -0.52 -9.70 14.36 5.56 0.08 -9.62 16 25 H 0.05 1.25 7.85 -51.93 -0.41 0.85 16 26 H 0.04 0.88 5.64 -51.93 -0.29 0.59 16 27 H 0.02 0.49 8.14 -51.93 -0.42 0.06 16 28 H 0.03 0.87 8.14 -51.93 -0.42 0.45 16 29 H 0.10 2.78 5.95 -51.93 -0.31 2.47 16 30 H 0.26 7.19 8.31 -40.82 -0.34 6.86 16 31 H 0.40 8.32 7.61 -40.82 -0.31 8.01 16 32 H 0.06 0.47 8.10 -51.93 -0.42 0.05 16 33 H 0.12 0.75 8.14 -51.93 -0.42 0.32 16 34 H 0.09 0.45 8.13 -51.92 -0.42 0.02 16 35 H 0.08 0.66 8.14 -51.93 -0.42 0.23 16 36 H 0.09 1.13 6.71 -51.93 -0.35 0.78 16 37 H 0.06 0.52 8.14 -51.93 -0.42 0.10 16 38 H 0.06 0.44 8.14 -51.93 -0.42 0.01 16 LS Contribution 309.01 15.07 4.66 4.66 Total: -1.00 -33.89 309.01 -6.41 -40.30 By element: Atomic # 1 Polarization: 11.42 SS G_CDS: -5.40 Total: 6.01 kcal Atomic # 6 Polarization: 9.73 SS G_CDS: 0.24 Total: 9.97 kcal Atomic # 7 Polarization: -48.24 SS G_CDS: -0.21 Total: -48.45 kcal Atomic # 8 Polarization: -27.90 SS G_CDS: -0.67 Total: -28.57 kcal Atomic # 14 Polarization: 21.10 SS G_CDS: -5.02 Total: 16.08 kcal Total LS contribution 4.66 Total: 4.66 kcal Total: -33.89 -6.41 -40.30 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907386030.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -62.707 kcal (2) G-P(sol) polarization free energy of solvation -33.891 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -96.598 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.409 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.300 kcal (6) G-S(sol) free energy of system = (1) + (5) -103.007 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds