Wall clock time and date at job start Mon Mar 30 2020 01:22:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53004 * 1 3 3 C 1.52999 * 109.47183 * 2 1 4 4 H 1.09000 * 109.47000 * 54.99320 * 3 2 1 5 5 C 1.50697 * 109.47303 * 174.99866 * 3 2 1 6 6 H 1.07996 * 119.99773 * 119.99450 * 5 3 2 7 7 C 1.37877 * 119.99975 * 299.99866 * 5 3 2 8 8 N 1.31516 * 120.00044 * 0.02562 * 7 5 3 9 9 Si 1.86799 * 119.99981 * 179.97438 * 7 5 3 10 10 H 1.48504 * 109.46972 * 59.99912 * 9 7 5 11 11 H 1.48492 * 109.47247 * 180.02562 * 9 7 5 12 12 H 1.48500 * 109.47134 * 300.00119 * 9 7 5 13 13 N 1.46508 * 109.46760 * 295.00035 * 3 2 1 14 14 C 1.34775 * 120.00086 * 85.00193 * 13 3 2 15 15 O 1.21284 * 119.99910 * 359.97438 * 14 13 3 16 16 C 1.50697 * 119.99982 * 179.97438 * 14 13 3 17 17 H 1.09002 * 109.41308 * 304.99807 * 16 14 13 18 18 O 1.42967 * 109.41621 * 185.13681 * 16 14 13 19 19 C 1.43112 * 113.07321 * 190.31541 * 18 16 14 20 20 C 1.53025 * 108.62869 * 68.40248 * 19 18 16 21 21 N 1.46085 * 109.92530 * 310.83908 * 20 19 18 22 22 C 1.46504 * 118.73453 * 198.38207 * 21 20 19 23 23 C 1.33873 * 122.54239 * 18.35811 * 21 20 19 24 24 O 1.21282 * 118.83437 * 178.11304 * 23 21 20 25 25 H 1.09004 * 109.47229 * 300.00328 * 1 2 3 26 26 H 1.08998 * 109.47019 * 60.00373 * 1 2 3 27 27 H 1.08996 * 109.47248 * 180.02562 * 1 2 3 28 28 H 1.08994 * 109.47117 * 239.99856 * 2 1 3 29 29 H 1.08998 * 109.47019 * 119.99627 * 2 1 3 30 30 H 0.96994 * 119.99847 * 180.02562 * 8 7 5 31 31 H 0.96998 * 119.99853 * 264.99917 * 13 3 2 32 32 H 1.09004 * 109.62439 * 308.66634 * 19 18 16 33 33 H 1.09000 * 109.76414 * 188.22746 * 19 18 16 34 34 H 1.09009 * 109.39148 * 190.70315 * 20 19 18 35 35 H 1.08994 * 109.39672 * 70.97851 * 20 19 18 36 36 H 1.08993 * 109.47693 * 179.97438 * 22 21 20 37 37 H 1.08997 * 109.46566 * 299.98216 * 22 21 20 38 38 H 1.08998 * 109.46850 * 59.97668 * 22 21 20 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6053 1.9815 0.8417 5 6 3.5419 1.4443 0.1239 6 1 4.1472 1.8888 -0.6523 7 6 4.1433 0.8785 1.2280 8 7 3.4062 0.3367 2.1729 9 14 6.0050 0.8801 1.3812 10 1 6.5004 2.2801 1.3808 11 1 6.3978 0.2158 2.6498 12 1 6.5967 0.1453 0.2344 13 7 1.6524 2.0974 -1.2519 14 6 0.4351 2.6643 -1.3670 15 8 -0.3396 2.6319 -0.4345 16 6 0.0367 3.3385 -2.6546 17 1 0.7781 4.0949 -2.9120 18 8 -1.2398 3.9610 -2.4898 19 6 -1.8019 4.4225 -3.7223 20 6 -2.1692 3.2077 -4.5773 21 7 -1.0419 2.2805 -4.6352 22 6 -1.0113 1.2744 -5.6997 23 6 -0.0352 2.3148 -3.7533 24 8 0.8499 1.4905 -3.8437 25 1 -0.3634 0.5139 0.8900 26 1 -0.3633 0.5138 -0.8900 27 1 -0.3633 -1.0276 0.0005 28 1 1.8934 -0.5138 -0.8899 29 1 1.8934 -0.5138 0.8900 30 1 3.8293 -0.0611 2.9498 31 1 2.2719 2.1231 -1.9978 32 1 -1.0714 5.0346 -4.2514 33 1 -2.6963 5.0123 -3.5215 34 1 -2.4191 3.5372 -5.5859 35 1 -3.0304 2.7035 -4.1389 36 1 -0.1109 0.6682 -5.6011 37 1 -1.8904 0.6349 -5.6205 38 1 -1.0100 1.7717 -6.6697 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000907386030.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:22:54 Heat of formation + Delta-G solvation = -128.405137 kcal Electronic energy + Delta-G solvation = -22004.290091 eV Core-core repulsion = 18653.447863 eV Total energy + Delta-G solvation = -3350.842228 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.56 seconds Orbital eigenvalues (eV) -42.15956 -40.28606 -38.89564 -36.97786 -36.43045 -34.31683 -32.98160 -31.42017 -30.24107 -28.83330 -26.95046 -24.96469 -24.77547 -22.49953 -21.26987 -20.36461 -19.34587 -18.94382 -17.97618 -17.80661 -17.26549 -16.70839 -16.52364 -16.13280 -15.88965 -15.37425 -15.21615 -14.82843 -14.62040 -14.22681 -13.82717 -13.68572 -13.50348 -13.28860 -13.18138 -13.06867 -12.91993 -12.65767 -12.34949 -12.20191 -12.08781 -11.76239 -11.63234 -11.09467 -10.75631 -10.56344 -10.51643 -9.86536 -9.67480 -8.15922 -6.33462 1.07579 1.43604 1.46285 1.47902 1.55569 1.94255 2.05108 2.43434 2.96263 3.13119 3.17633 3.71084 3.75255 3.89799 4.14980 4.31661 4.43744 4.44378 4.50394 4.58934 4.68504 4.69582 4.83094 4.92249 5.02434 5.18431 5.22775 5.38653 5.49739 5.58824 5.67760 5.77098 5.89684 6.11326 6.13440 6.71705 6.78924 6.90134 7.29890 7.46114 8.89768 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.029300 B = 0.005140 C = 0.005025 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 955.398066 B = 5446.070979 C = 5571.256739 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.120 4.120 2 C -0.118 4.118 3 C 0.279 3.721 4 H 0.005 0.995 5 C -0.551 4.551 6 H 0.069 0.931 7 C 0.017 3.983 8 N -0.914 5.914 9 Si 0.974 3.026 10 H -0.269 1.269 11 H -0.283 1.283 12 H -0.268 1.268 13 N -0.686 5.686 14 C 0.512 3.488 15 O -0.565 6.565 16 C 0.068 3.932 17 H 0.141 0.859 18 O -0.367 6.367 19 C 0.030 3.970 20 C 0.073 3.927 21 N -0.604 5.604 22 C 0.071 3.929 23 C 0.491 3.509 24 O -0.556 6.556 25 H 0.031 0.969 26 H 0.032 0.968 27 H 0.045 0.955 28 H 0.032 0.968 29 H 0.077 0.923 30 H 0.266 0.734 31 H 0.403 0.597 32 H 0.085 0.915 33 H 0.151 0.849 34 H 0.132 0.868 35 H 0.078 0.922 36 H 0.066 0.934 37 H 0.075 0.925 38 H 0.096 0.904 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.158 7.367 -18.230 22.131 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.177 4.177 2 C -0.157 4.157 3 C 0.177 3.823 4 H 0.023 0.977 5 C -0.589 4.589 6 H 0.087 0.913 7 C -0.183 4.183 8 N -0.552 5.552 9 Si 0.798 3.202 10 H -0.194 1.194 11 H -0.209 1.209 12 H -0.193 1.193 13 N -0.335 5.335 14 C 0.295 3.705 15 O -0.445 6.445 16 C 0.003 3.997 17 H 0.158 0.842 18 O -0.285 6.285 19 C -0.046 4.046 20 C -0.048 4.048 21 N -0.337 5.337 22 C -0.071 4.071 23 C 0.277 3.723 24 O -0.435 6.435 25 H 0.050 0.950 26 H 0.051 0.949 27 H 0.064 0.936 28 H 0.051 0.949 29 H 0.095 0.905 30 H 0.075 0.925 31 H 0.239 0.761 32 H 0.103 0.897 33 H 0.168 0.832 34 H 0.150 0.850 35 H 0.097 0.903 36 H 0.085 0.915 37 H 0.094 0.906 38 H 0.114 0.886 Dipole moment (debyes) X Y Z Total from point charges -10.348 6.841 -17.258 21.253 hybrid contribution 1.133 -0.230 -0.024 1.156 sum -9.215 6.611 -17.282 20.671 Atomic orbital electron populations 1.21636 0.97153 0.99045 0.99864 1.21767 0.93601 0.99350 1.01022 1.18450 0.93989 0.89073 0.80834 0.97715 1.21503 0.91143 1.39415 1.06799 0.91268 1.25778 1.03559 0.94151 0.94833 1.70036 1.37225 1.38147 1.09831 0.85381 0.78745 0.78579 0.77519 1.19380 1.20857 1.19255 1.46191 1.14844 1.54809 1.17695 1.19968 0.82604 0.79469 0.88416 1.90675 1.52086 1.60333 1.41356 1.22073 0.90544 0.95284 0.91792 0.84186 1.88307 1.31316 1.76597 1.32283 1.23519 1.01784 0.95387 0.83889 1.22512 0.87949 0.90258 1.04091 1.47475 1.21902 1.35241 1.29104 1.21942 1.03615 0.91880 0.89641 1.20446 0.82869 0.85690 0.83303 1.90761 1.39296 1.39795 1.73675 0.94998 0.94891 0.93584 0.94906 0.90473 0.92457 0.76125 0.89652 0.83183 0.84999 0.90335 0.91473 0.90602 0.88566 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.12 -5.95 8.51 71.98 0.61 -5.33 16 2 C -0.12 -6.37 5.45 30.60 0.17 -6.21 16 3 C 0.28 15.39 2.24 44.24 0.10 15.49 16 4 H 0.00 0.32 7.58 -2.39 -0.02 0.30 16 5 C -0.55 -30.75 8.73 25.60 0.22 -30.53 16 6 H 0.07 3.66 7.74 -2.91 -0.02 3.64 16 7 C 0.02 0.95 5.29 84.65 0.45 1.39 16 8 N -0.91 -53.72 11.29 21.45 0.24 -53.48 16 9 Si 0.97 43.42 29.54 68.60 2.03 45.45 16 10 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 11 H -0.28 -12.40 7.11 99.48 0.71 -11.69 16 12 H -0.27 -11.52 7.11 99.48 0.71 -10.81 16 13 N -0.69 -32.01 4.55 -446.09 -2.03 -34.04 16 14 C 0.51 22.62 5.63 87.66 0.49 23.11 16 15 O -0.56 -29.26 13.64 15.97 0.22 -29.05 16 16 C 0.07 2.16 3.31 28.99 0.10 2.26 16 17 H 0.14 3.59 8.14 -2.39 -0.02 3.57 16 18 O -0.37 -10.59 10.02 -129.97 -1.30 -11.89 16 19 C 0.03 0.44 6.90 71.99 0.50 0.93 16 20 C 0.07 0.95 6.69 86.47 0.58 1.53 16 21 N -0.60 -13.09 3.23 -849.58 -2.75 -15.83 16 22 C 0.07 1.21 10.58 127.77 1.35 2.56 16 23 C 0.49 15.14 7.13 87.69 0.62 15.76 16 24 O -0.56 -20.98 14.36 -3.04 -0.04 -21.02 16 25 H 0.03 1.66 7.85 -2.39 -0.02 1.64 16 26 H 0.03 1.63 5.64 -2.39 -0.01 1.62 16 27 H 0.05 2.01 8.14 -2.39 -0.02 1.99 16 28 H 0.03 1.72 8.14 -2.39 -0.02 1.70 16 29 H 0.08 4.50 5.95 -2.39 -0.01 4.49 16 30 H 0.27 14.78 8.31 -92.71 -0.77 14.01 16 31 H 0.40 17.36 7.61 -92.71 -0.71 16.66 16 32 H 0.09 0.90 8.10 -2.38 -0.02 0.88 16 33 H 0.15 1.25 8.14 -2.39 -0.02 1.23 16 34 H 0.13 0.59 8.13 -2.38 -0.02 0.57 16 35 H 0.08 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.07 1.55 6.71 -2.39 -0.02 1.54 16 37 H 0.08 1.09 8.14 -2.39 -0.02 1.07 16 38 H 0.10 0.98 8.14 -2.39 -0.02 0.96 16 Total: -1.00 -77.32 309.01 1.92 -75.40 By element: Atomic # 1 Polarization: 23.13 SS G_CDS: 0.37 Total: 23.50 kcal Atomic # 6 Polarization: 15.78 SS G_CDS: 5.19 Total: 20.97 kcal Atomic # 7 Polarization: -98.82 SS G_CDS: -4.54 Total: -103.36 kcal Atomic # 8 Polarization: -60.83 SS G_CDS: -1.13 Total: -61.96 kcal Atomic # 14 Polarization: 43.42 SS G_CDS: 2.03 Total: 45.45 kcal Total: -77.32 1.92 -75.40 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000907386030.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -53.010 kcal (2) G-P(sol) polarization free energy of solvation -77.317 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -130.327 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.922 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.395 kcal (6) G-S(sol) free energy of system = (1) + (5) -128.405 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.56 seconds