Wall clock time and date at job start Mon Mar 30 2020 01:10:41 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00113 * 2 1 4 4 C 1.53009 * 109.47089 * 179.97438 * 3 2 1 5 5 H 1.09002 * 110.65038 * 56.46230 * 4 3 2 6 6 N 1.47304 * 110.60017 * 293.54519 * 4 3 2 7 7 C 1.34528 * 106.62119 * 241.47190 * 6 4 3 8 8 O 1.21539 * 123.77281 * 179.97438 * 7 6 4 9 9 N 1.33795 * 112.45326 * 0.02562 * 7 6 4 10 10 C 1.46503 * 124.17304 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47511 * 90.01849 * 10 9 7 12 12 C 1.53000 * 109.47215 * 300.00213 * 11 10 9 13 13 C 1.53008 * 109.46688 * 59.99774 * 11 10 9 14 14 C 1.50692 * 109.47198 * 179.97438 * 11 10 9 15 15 H 1.08008 * 120.00244 * 1.20138 * 14 11 10 16 16 C 1.37882 * 119.99972 * 181.20059 * 14 11 10 17 17 N 1.31520 * 119.99872 * 194.18874 * 16 14 11 18 18 Si 1.86794 * 119.99800 * 14.18462 * 16 14 11 19 19 H 1.48504 * 109.47299 * 84.54414 * 18 16 14 20 20 H 1.48506 * 109.46877 * 204.53991 * 18 16 14 21 21 H 1.48500 * 109.47585 * 324.54022 * 18 16 14 22 22 C 1.34757 * 111.64489 * 0.22478 * 9 7 6 23 23 O 1.21244 * 127.15435 * 179.73762 * 22 9 7 24 24 H 1.09002 * 109.47299 * 300.00003 * 1 2 3 25 25 H 1.08994 * 109.46955 * 60.00179 * 1 2 3 26 26 H 1.09008 * 109.46756 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47482 * 59.99989 * 3 2 1 28 28 H 1.09001 * 109.47195 * 299.99811 * 3 2 1 29 29 H 0.97003 * 126.68887 * 61.44290 * 6 4 3 30 30 H 1.08998 * 109.47030 * 330.02016 * 10 9 7 31 31 H 1.09001 * 109.46915 * 210.02282 * 10 9 7 32 32 H 1.09002 * 109.46776 * 309.47849 * 12 11 10 33 33 H 1.08996 * 109.47146 * 189.48079 * 12 11 10 34 34 H 1.08998 * 109.46859 * 69.48139 * 12 11 10 35 35 H 1.09002 * 109.47118 * 300.00095 * 13 11 10 36 36 H 1.09001 * 109.46904 * 60.00076 * 13 11 10 37 37 H 1.08993 * 109.46751 * 179.97438 * 13 11 10 38 38 H 0.97001 * 119.99332 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.8746 0.5923 -0.8493 6 7 4.0082 0.5947 1.2650 7 6 4.7948 1.5165 1.8492 8 8 5.3515 1.3508 2.9168 9 7 4.8950 2.6364 1.1241 10 6 5.6856 3.8047 1.5194 11 6 7.1081 3.6666 0.9731 12 6 7.7515 2.3997 1.5406 13 6 7.0615 3.5750 -0.5535 14 6 7.9211 4.8686 1.3792 15 1 7.4741 5.6435 1.9844 16 6 9.2357 4.9793 0.9782 17 7 10.0245 5.8646 1.5473 18 14 9.8963 3.8716 -0.3731 19 1 9.5810 4.4646 -1.6976 20 1 11.3682 3.7381 -0.2283 21 1 9.2649 2.5316 -0.2678 22 6 4.1746 2.5590 -0.0121 23 8 4.0624 3.4109 -0.8675 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8463 -0.8900 29 1 3.7936 -0.2863 1.6094 30 1 5.7188 3.8699 2.6069 31 1 5.2272 4.7073 1.1151 32 1 7.6340 2.3866 2.6241 33 1 8.8122 2.3874 1.2900 34 1 7.2667 1.5227 1.1118 35 1 6.4733 2.7057 -0.8476 36 1 6.6031 4.4776 -0.9577 37 1 8.0749 3.4770 -0.9426 38 1 10.9494 5.9421 1.2654 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000924927709.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:41 Heat of formation + Delta-G solvation = -66.539863 kcal Electronic energy + Delta-G solvation = -22110.500108 eV Core-core repulsion = 18762.340559 eV Total energy + Delta-G solvation = -3348.159549 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -42.30510 -38.45027 -38.23793 -36.64316 -35.83689 -33.65185 -31.54616 -30.01359 -27.23232 -26.49736 -26.26555 -24.87319 -24.10816 -22.14858 -20.88393 -18.91094 -17.80761 -17.33926 -16.61969 -16.46438 -16.20920 -15.93616 -15.32438 -15.11570 -14.88246 -14.74524 -13.99354 -13.85326 -13.16699 -13.02107 -12.77174 -12.65549 -12.41558 -12.10979 -11.88610 -11.79321 -11.03216 -11.00400 -10.77574 -10.24983 -10.16208 -10.10403 -9.94775 -9.85134 -9.49105 -9.34692 -9.07787 -8.52498 -8.40408 -6.12131 -4.09030 1.72548 2.43860 3.05523 3.26204 3.30284 3.38877 3.43067 3.52120 4.09442 4.40784 4.47915 4.61583 4.95077 4.97797 5.06414 5.19608 5.25691 5.29956 5.40953 5.83222 5.87321 5.97865 6.12707 6.41778 6.48149 6.61146 6.63829 6.70743 6.76175 6.89332 7.05124 7.23259 7.34180 7.53992 7.55238 7.76556 8.36617 8.45482 8.90415 9.52645 11.00707 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.035547 B = 0.005399 C = 0.005173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.494540 B = 5184.445060 C = 5411.594811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.387 6.387 3 C 0.065 3.935 4 C 0.094 3.906 5 H 0.131 0.869 6 N -0.725 5.725 7 C 0.699 3.301 8 O -0.532 6.532 9 N -0.564 5.564 10 C 0.138 3.862 11 C 0.025 3.975 12 C -0.134 4.134 13 C -0.141 4.141 14 C -0.512 4.512 15 H 0.077 0.923 16 C 0.079 3.921 17 N -0.891 5.891 18 Si 0.884 3.116 19 H -0.285 1.285 20 H -0.305 1.305 21 H -0.250 1.250 22 C 0.526 3.474 23 O -0.461 6.461 24 H 0.043 0.957 25 H 0.044 0.956 26 H 0.089 0.911 27 H 0.062 0.938 28 H 0.077 0.923 29 H 0.439 0.561 30 H 0.093 0.907 31 H 0.089 0.911 32 H 0.055 0.945 33 H 0.052 0.948 34 H 0.014 0.986 35 H 0.021 0.979 36 H 0.056 0.944 37 H 0.040 0.960 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.812 -11.637 -4.048 21.658 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.306 6.306 3 C -0.013 4.013 4 C -0.016 4.016 5 H 0.148 0.852 6 N -0.391 5.391 7 C 0.400 3.600 8 O -0.404 6.404 9 N -0.309 5.309 10 C 0.019 3.981 11 C 0.024 3.976 12 C -0.192 4.192 13 C -0.198 4.198 14 C -0.550 4.550 15 H 0.095 0.905 16 C -0.124 4.124 17 N -0.527 5.527 18 Si 0.716 3.284 19 H -0.213 1.213 20 H -0.233 1.233 21 H -0.176 1.176 22 C 0.311 3.689 23 O -0.331 6.331 24 H 0.062 0.938 25 H 0.063 0.937 26 H 0.107 0.893 27 H 0.080 0.920 28 H 0.095 0.905 29 H 0.283 0.717 30 H 0.111 0.889 31 H 0.107 0.893 32 H 0.074 0.926 33 H 0.070 0.930 34 H 0.034 0.966 35 H 0.040 0.960 36 H 0.075 0.925 37 H 0.058 0.942 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -17.206 -11.202 -3.878 20.894 hybrid contribution 0.201 -0.730 -0.759 1.072 sum -17.005 -11.932 -4.637 21.285 Atomic orbital electron populations 1.22780 0.80194 1.03056 1.00365 1.87830 1.20346 1.26853 1.95564 1.22598 0.90475 0.85794 1.02416 1.22017 0.94712 0.94234 0.90644 0.85182 1.45515 1.52326 1.18975 1.22286 1.15949 0.79760 0.80493 0.83822 1.91013 1.49682 1.79348 1.20383 1.46586 1.45507 1.17810 1.21045 1.22062 0.91584 0.82991 1.01448 1.18853 0.91033 0.96133 0.91616 1.22237 1.00357 0.95760 1.00799 1.22328 0.99306 0.99536 0.98626 1.20635 0.95672 1.04670 1.34029 0.90482 1.24918 0.96363 0.95093 0.96038 1.69949 1.06188 1.36239 1.40339 0.87313 0.75957 0.82546 0.82560 1.21292 1.23344 1.17621 1.20385 0.78768 0.88060 0.81662 1.90815 1.60196 1.44166 1.37933 0.93797 0.93697 0.89288 0.91954 0.90520 0.71682 0.88910 0.89250 0.92622 0.92959 0.96650 0.95994 0.92466 0.94193 0.92557 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.20 11.01 101.05 1.11 1.31 16 2 O -0.39 -3.40 10.69 -35.23 -0.38 -3.78 16 3 C 0.07 0.59 5.65 37.16 0.21 0.80 16 4 C 0.09 1.04 3.99 -68.20 -0.27 0.77 16 5 H 0.13 1.25 8.14 -51.93 -0.42 0.82 16 6 N -0.73 -8.71 6.23 -59.19 -0.37 -9.08 16 7 C 0.70 11.51 7.23 -88.02 -0.64 10.88 16 8 O -0.53 -10.53 16.10 5.33 0.09 -10.44 16 9 N -0.56 -9.65 2.15 -120.73 -0.26 -9.91 16 10 C 0.14 2.75 4.66 -4.04 -0.02 2.73 16 11 C 0.03 0.59 0.57 -155.66 -0.09 0.50 16 12 C -0.13 -3.10 6.51 37.16 0.24 -2.86 16 13 C -0.14 -3.16 6.72 37.16 0.25 -2.91 16 14 C -0.51 -14.01 8.62 -34.44 -0.30 -14.31 16 15 H 0.08 2.24 7.99 -52.48 -0.42 1.82 16 16 C 0.08 2.24 5.32 -17.82 -0.09 2.15 16 17 N -0.89 -27.00 13.96 55.43 0.77 -26.22 16 18 Si 0.88 22.16 22.79 -169.99 -3.87 18.29 16 19 H -0.29 -7.10 7.10 56.52 0.40 -6.70 16 20 H -0.30 -7.73 7.11 56.52 0.40 -7.33 16 21 H -0.25 -5.93 4.65 56.52 0.26 -5.67 16 22 C 0.53 7.97 5.98 -10.56 -0.06 7.90 16 23 O -0.46 -7.96 16.90 5.59 0.09 -7.86 16 24 H 0.04 0.24 8.14 -51.93 -0.42 -0.18 16 25 H 0.04 0.23 8.14 -51.93 -0.42 -0.19 16 26 H 0.09 0.42 8.14 -51.92 -0.42 -0.01 16 27 H 0.06 0.56 8.14 -51.93 -0.42 0.14 16 28 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 29 H 0.44 4.30 8.96 -40.82 -0.37 3.93 16 30 H 0.09 1.87 7.86 -51.93 -0.41 1.46 16 31 H 0.09 1.73 8.00 -51.93 -0.42 1.31 16 32 H 0.05 1.31 7.56 -51.93 -0.39 0.92 16 33 H 0.05 1.26 4.30 -51.93 -0.22 1.04 16 34 H 0.01 0.32 6.97 -51.93 -0.36 -0.05 16 35 H 0.02 0.44 6.21 -51.93 -0.32 0.11 16 36 H 0.06 1.28 8.14 -51.93 -0.42 0.86 16 37 H 0.04 0.94 2.26 -51.93 -0.12 0.82 16 38 H 0.26 7.58 8.31 -40.82 -0.34 7.24 16 LS Contribution 299.35 15.07 4.51 4.51 Total: -1.00 -32.64 299.35 -4.33 -36.97 By element: Atomic # 1 Polarization: 5.83 SS G_CDS: -5.26 Total: 0.57 kcal Atomic # 6 Polarization: 6.62 SS G_CDS: 0.34 Total: 6.96 kcal Atomic # 7 Polarization: -45.36 SS G_CDS: 0.15 Total: -45.22 kcal Atomic # 8 Polarization: -21.89 SS G_CDS: -0.20 Total: -22.08 kcal Atomic # 14 Polarization: 22.16 SS G_CDS: -3.87 Total: 18.29 kcal Total LS contribution 4.51 Total: 4.51 kcal Total: -32.64 -4.33 -36.97 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924927709.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -29.567 kcal (2) G-P(sol) polarization free energy of solvation -32.644 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -62.211 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.329 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.973 kcal (6) G-S(sol) free energy of system = (1) + (5) -66.540 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds