Wall clock time and date at job start Mon Mar 30 2020 01:10:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42897 * 1 3 3 C 1.42895 * 114.00113 * 2 1 4 4 C 1.53009 * 109.47089 * 179.97438 * 3 2 1 5 5 H 1.09002 * 110.65038 * 56.46230 * 4 3 2 6 6 N 1.47304 * 110.60017 * 293.54519 * 4 3 2 7 7 C 1.34528 * 106.62119 * 241.47190 * 6 4 3 8 8 O 1.21539 * 123.77281 * 179.97438 * 7 6 4 9 9 N 1.33795 * 112.45326 * 0.02562 * 7 6 4 10 10 C 1.46503 * 124.17304 * 179.97438 * 9 7 6 11 11 C 1.53001 * 109.47511 * 90.01849 * 10 9 7 12 12 C 1.53000 * 109.47215 * 300.00213 * 11 10 9 13 13 C 1.53008 * 109.46688 * 59.99774 * 11 10 9 14 14 C 1.50692 * 109.47198 * 179.97438 * 11 10 9 15 15 H 1.08008 * 120.00244 * 1.20138 * 14 11 10 16 16 C 1.37882 * 119.99972 * 181.20059 * 14 11 10 17 17 N 1.31520 * 119.99872 * 194.18874 * 16 14 11 18 18 Si 1.86794 * 119.99800 * 14.18462 * 16 14 11 19 19 H 1.48504 * 109.47299 * 84.54414 * 18 16 14 20 20 H 1.48506 * 109.46877 * 204.53991 * 18 16 14 21 21 H 1.48500 * 109.47585 * 324.54022 * 18 16 14 22 22 C 1.34757 * 111.64489 * 0.22478 * 9 7 6 23 23 O 1.21244 * 127.15435 * 179.73762 * 22 9 7 24 24 H 1.09002 * 109.47299 * 300.00003 * 1 2 3 25 25 H 1.08994 * 109.46955 * 60.00179 * 1 2 3 26 26 H 1.09008 * 109.46756 * 179.97438 * 1 2 3 27 27 H 1.08997 * 109.47482 * 59.99989 * 3 2 1 28 28 H 1.09001 * 109.47195 * 299.99811 * 3 2 1 29 29 H 0.97003 * 126.68887 * 61.44290 * 6 4 3 30 30 H 1.08998 * 109.47030 * 330.02016 * 10 9 7 31 31 H 1.09001 * 109.46915 * 210.02282 * 10 9 7 32 32 H 1.09002 * 109.46776 * 309.47849 * 12 11 10 33 33 H 1.08996 * 109.47146 * 189.48079 * 12 11 10 34 34 H 1.08998 * 109.46859 * 69.48139 * 12 11 10 35 35 H 1.09002 * 109.47118 * 300.00095 * 13 11 10 36 36 H 1.09001 * 109.46904 * 60.00076 * 13 11 10 37 37 H 1.08993 * 109.46751 * 179.97438 * 13 11 10 38 38 H 0.97001 * 119.99332 * 179.97438 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5355 1.1845 0.0006 5 1 3.8746 0.5923 -0.8493 6 7 4.0082 0.5947 1.2650 7 6 4.7948 1.5165 1.8492 8 8 5.3515 1.3508 2.9168 9 7 4.8950 2.6364 1.1241 10 6 5.6856 3.8047 1.5194 11 6 7.1081 3.6666 0.9731 12 6 7.7515 2.3997 1.5406 13 6 7.0615 3.5750 -0.5535 14 6 7.9211 4.8686 1.3792 15 1 7.4741 5.6435 1.9844 16 6 9.2357 4.9793 0.9782 17 7 10.0245 5.8646 1.5473 18 14 9.8963 3.8716 -0.3731 19 1 9.5810 4.4646 -1.6976 20 1 11.3682 3.7381 -0.2283 21 1 9.2649 2.5316 -0.2678 22 6 4.1746 2.5590 -0.0121 23 8 4.0624 3.4109 -0.8675 24 1 -0.3634 0.5138 0.8900 25 1 -0.3633 0.5138 -0.8900 26 1 -0.3633 -1.0278 -0.0005 27 1 1.6886 1.8464 0.8899 28 1 1.6886 1.8463 -0.8900 29 1 3.7936 -0.2863 1.6094 30 1 5.7188 3.8699 2.6069 31 1 5.2272 4.7073 1.1151 32 1 7.6340 2.3866 2.6241 33 1 8.8122 2.3874 1.2900 34 1 7.2667 1.5227 1.1118 35 1 6.4733 2.7057 -0.8476 36 1 6.6031 4.4776 -0.9577 37 1 8.0749 3.4770 -0.9426 38 1 10.9494 5.9421 1.2654 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000924927709.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:40 Heat of formation + Delta-G solvation = -92.708349 kcal Electronic energy + Delta-G solvation = -22111.634859 eV Core-core repulsion = 18762.340559 eV Total energy + Delta-G solvation = -3349.294299 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.54680 -39.67694 -39.09666 -38.22912 -37.10040 -35.15361 -33.57057 -30.88527 -28.56601 -28.10991 -27.31385 -26.95101 -25.11070 -23.32444 -22.26813 -20.53839 -19.01051 -18.52904 -18.14012 -17.68476 -17.32197 -17.18684 -16.67966 -16.38396 -16.03108 -15.85801 -15.26218 -15.07418 -14.89523 -14.69757 -14.68499 -14.04327 -13.76952 -13.50424 -13.09887 -12.75267 -12.72068 -12.52534 -12.33357 -12.02799 -11.94246 -11.72014 -11.27150 -11.13446 -11.02748 -10.71399 -10.62020 -10.49126 -10.24061 -8.33112 -6.32979 0.54034 1.20489 1.31531 1.34126 1.44317 1.98714 2.09293 2.31141 2.64041 3.02705 3.11363 3.67713 3.84432 4.03425 4.05200 4.27475 4.35597 4.46623 4.47340 4.51170 4.61309 4.62932 4.67205 4.72590 4.82598 4.87936 4.92999 4.95616 5.20250 5.36688 5.63386 5.70987 5.86592 6.05544 6.13040 6.25451 6.36820 6.69848 7.15079 7.31661 8.83311 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.035547 B = 0.005399 C = 0.005173 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 787.494540 B = 5184.445060 C = 5411.594811 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.026 3.974 2 O -0.398 6.398 3 C 0.071 3.929 4 C 0.106 3.894 5 H 0.159 0.841 6 N -0.701 5.701 7 C 0.696 3.304 8 O -0.571 6.571 9 N -0.572 5.572 10 C 0.148 3.852 11 C 0.021 3.979 12 C -0.124 4.124 13 C -0.134 4.134 14 C -0.512 4.512 15 H 0.044 0.956 16 C 0.026 3.974 17 N -0.938 5.938 18 Si 0.936 3.064 19 H -0.279 1.279 20 H -0.310 1.310 21 H -0.225 1.225 22 C 0.523 3.477 23 O -0.482 6.482 24 H 0.048 0.952 25 H 0.054 0.946 26 H 0.102 0.898 27 H 0.062 0.938 28 H 0.090 0.910 29 H 0.452 0.548 30 H 0.082 0.918 31 H 0.090 0.910 32 H 0.042 0.958 33 H 0.040 0.960 34 H 0.034 0.966 35 H 0.045 0.955 36 H 0.052 0.948 37 H 0.032 0.968 38 H 0.265 0.735 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.713 -14.097 -5.791 24.917 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.070 4.070 2 O -0.317 6.317 3 C -0.007 4.007 4 C -0.003 4.003 5 H 0.176 0.824 6 N -0.367 5.367 7 C 0.397 3.603 8 O -0.447 6.447 9 N -0.317 5.317 10 C 0.028 3.972 11 C 0.019 3.981 12 C -0.182 4.182 13 C -0.191 4.191 14 C -0.550 4.550 15 H 0.062 0.938 16 C -0.173 4.173 17 N -0.577 5.577 18 Si 0.766 3.234 19 H -0.207 1.207 20 H -0.239 1.239 21 H -0.150 1.150 22 C 0.311 3.689 23 O -0.353 6.353 24 H 0.066 0.934 25 H 0.073 0.927 26 H 0.121 0.879 27 H 0.080 0.920 28 H 0.108 0.892 29 H 0.299 0.701 30 H 0.100 0.900 31 H 0.109 0.891 32 H 0.061 0.939 33 H 0.059 0.941 34 H 0.053 0.947 35 H 0.064 0.936 36 H 0.071 0.929 37 H 0.050 0.950 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges -19.176 -13.718 -5.650 24.245 hybrid contribution 0.666 0.072 -0.168 0.691 sum -18.510 -13.646 -5.819 23.721 Atomic orbital electron populations 1.22976 0.78681 1.04252 1.01082 1.87800 1.21901 1.26318 1.95697 1.22505 0.88701 0.86331 1.03148 1.22100 0.96000 0.91472 0.90730 0.82364 1.45404 1.50634 1.18625 1.22072 1.16041 0.80049 0.80803 0.83383 1.90996 1.51538 1.80044 1.22073 1.46506 1.45709 1.17349 1.22147 1.21612 0.90415 0.84509 1.00696 1.18818 0.92327 0.94261 0.92649 1.22091 0.99633 0.96308 1.00118 1.22208 0.99113 1.00472 0.97320 1.20919 0.96054 1.05284 1.32718 0.93783 1.25679 0.96830 0.96642 0.98114 1.70077 1.06665 1.38683 1.42311 0.86437 0.75036 0.82113 0.79772 1.20656 1.23899 1.14977 1.20973 0.78149 0.89336 0.80463 1.90812 1.60731 1.45350 1.38410 0.93379 0.92710 0.87937 0.91976 0.89203 0.70071 0.89984 0.89130 0.93878 0.94124 0.94694 0.93590 0.92889 0.95017 0.92561 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 113.37 1.25 1.47 16 2 O -0.40 -5.49 10.69 -148.98 -1.59 -7.08 16 3 C 0.07 1.03 5.65 71.99 0.41 1.44 16 4 C 0.11 1.95 3.99 44.38 0.18 2.12 16 5 H 0.16 2.22 8.14 -2.39 -0.02 2.20 16 6 N -0.70 -14.58 6.23 -459.60 -2.86 -17.45 16 7 C 0.70 21.57 7.23 179.44 1.30 22.87 16 8 O -0.57 -22.08 16.10 -3.84 -0.06 -22.14 16 9 N -0.57 -18.56 2.15 -773.12 -1.66 -20.23 16 10 C 0.15 5.87 4.66 86.38 0.40 6.27 16 11 C 0.02 0.96 0.57 -52.93 -0.03 0.93 16 12 C -0.12 -5.58 6.51 71.98 0.47 -5.11 16 13 C -0.13 -5.74 6.72 71.98 0.48 -5.25 16 14 C -0.51 -28.58 8.62 25.60 0.22 -28.35 16 15 H 0.04 2.68 7.99 -2.91 -0.02 2.66 16 16 C 0.03 1.49 5.32 84.66 0.45 1.94 16 17 N -0.94 -58.54 13.96 21.45 0.30 -58.24 16 18 Si 0.94 45.37 22.79 68.60 1.56 46.93 16 19 H -0.28 -13.19 7.10 99.48 0.71 -12.49 16 20 H -0.31 -15.19 7.11 99.48 0.71 -14.49 16 21 H -0.23 -9.94 4.65 99.48 0.46 -9.48 16 22 C 0.52 14.43 5.98 87.94 0.53 14.95 16 23 O -0.48 -15.46 16.90 -2.92 -0.05 -15.50 16 24 H 0.05 0.38 8.14 -2.39 -0.02 0.37 16 25 H 0.05 0.38 8.14 -2.39 -0.02 0.36 16 26 H 0.10 0.62 8.14 -2.38 -0.02 0.60 16 27 H 0.06 0.92 8.14 -2.39 -0.02 0.90 16 28 H 0.09 1.12 8.14 -2.39 -0.02 1.10 16 29 H 0.45 7.28 8.96 -92.71 -0.83 6.45 16 30 H 0.08 3.38 7.86 -2.39 -0.02 3.37 16 31 H 0.09 3.51 8.00 -2.39 -0.02 3.49 16 32 H 0.04 2.02 7.56 -2.39 -0.02 2.00 16 33 H 0.04 1.89 4.30 -2.39 -0.01 1.88 16 34 H 0.03 1.40 6.97 -2.39 -0.02 1.39 16 35 H 0.05 1.72 6.21 -2.39 -0.01 1.70 16 36 H 0.05 2.29 8.14 -2.39 -0.02 2.27 16 37 H 0.03 1.41 2.26 -2.39 -0.01 1.40 16 38 H 0.27 15.63 8.31 -92.71 -0.77 14.86 16 Total: -1.00 -71.18 299.35 1.30 -69.88 By element: Atomic # 1 Polarization: 10.53 SS G_CDS: 0.01 Total: 10.55 kcal Atomic # 6 Polarization: 7.62 SS G_CDS: 5.65 Total: 13.27 kcal Atomic # 7 Polarization: -91.69 SS G_CDS: -4.23 Total: -95.91 kcal Atomic # 8 Polarization: -43.02 SS G_CDS: -1.70 Total: -44.73 kcal Atomic # 14 Polarization: 45.37 SS G_CDS: 1.56 Total: 46.93 kcal Total: -71.18 1.30 -69.88 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000924927709.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -22.824 kcal (2) G-P(sol) polarization free energy of solvation -71.182 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -94.006 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.298 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -69.884 kcal (6) G-S(sol) free energy of system = (1) + (5) -92.708 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds