Wall clock time and date at job start Mon Mar 30 2020 01:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46799 * 2 1 4 4 C 1.52998 * 110.65213 * 187.21309 * 3 2 1 5 5 O 1.42906 * 109.47201 * 177.78514 * 4 3 2 6 6 C 1.42899 * 113.99810 * 180.02562 * 5 4 3 7 7 N 1.47308 * 110.49977 * 310.18193 * 3 2 1 8 8 C 1.34523 * 106.61978 * 118.82402 * 7 3 2 9 9 O 1.21538 * 123.77372 * 179.76778 * 8 7 3 10 10 N 1.33795 * 112.45569 * 359.77017 * 8 7 3 11 11 C 1.46498 * 124.17860 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.47188 * 270.03934 * 11 10 8 13 13 C 1.50701 * 109.47376 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99842 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99938 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00273 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99691 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47609 * 59.99979 * 17 15 13 19 19 H 1.48500 * 109.47022 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47328 * 299.99826 * 17 15 13 21 21 C 1.34773 * 111.64536 * 359.97438 * 10 8 7 22 22 O 1.21233 * 127.15617 * 179.97438 * 21 10 8 23 23 H 1.08997 * 109.46982 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47082 * 300.00025 * 1 2 3 25 25 H 1.08994 * 109.47571 * 59.99771 * 1 2 3 26 26 H 1.09000 * 109.47082 * 239.99975 * 2 1 3 27 27 H 1.09001 * 109.47288 * 119.99623 * 2 1 3 28 28 H 1.09003 * 109.47417 * 297.79013 * 4 3 2 29 29 H 1.09005 * 109.47202 * 57.78578 * 4 3 2 30 30 H 1.09003 * 109.46448 * 180.02562 * 6 5 4 31 31 H 1.09001 * 109.47267 * 299.99459 * 6 5 4 32 32 H 1.08999 * 109.47619 * 60.00256 * 6 5 4 33 33 H 0.97003 * 126.69488 * 298.63273 * 7 3 2 34 34 H 1.08996 * 109.47229 * 30.03813 * 11 10 8 35 35 H 1.08997 * 109.47185 * 150.04300 * 11 10 8 36 36 H 1.09001 * 109.47377 * 300.00213 * 12 11 10 37 37 H 1.09002 * 109.47200 * 59.99948 * 12 11 10 38 38 H 0.96999 * 120.00245 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5589 1.4779 -0.1798 5 8 4.0014 2.8359 -0.2278 6 6 5.4131 2.9816 -0.3951 7 7 1.3725 2.2256 -1.0542 8 6 0.7111 3.2198 -0.4346 9 8 0.0528 4.0591 -1.0171 10 7 0.8590 3.1813 0.8946 11 6 0.2503 4.1415 1.8186 12 6 1.2049 5.3176 2.0339 13 6 0.5785 6.3057 2.9839 14 1 -0.4022 6.1138 3.3934 15 6 1.2579 7.4542 3.3310 16 7 2.4528 7.6871 2.8335 17 14 0.4817 8.6785 4.5090 18 1 0.2142 8.0131 5.8093 19 1 1.4082 9.8201 4.7180 20 1 -0.7947 9.1761 3.9359 21 6 1.6372 2.1501 1.2786 22 8 1.9539 1.8536 2.4106 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 4.0360 0.9697 0.6583 29 1 3.8266 0.9755 -1.1093 30 1 5.6683 4.0410 -0.4213 31 1 5.9289 2.5046 0.4383 32 1 5.7189 2.5106 -1.3292 33 1 1.4059 2.0589 -2.0092 34 1 -0.6867 4.5065 1.3981 35 1 0.0544 3.6531 2.7731 36 1 2.1420 4.9527 2.4544 37 1 1.4009 5.8060 1.0794 38 1 2.9306 8.4953 3.0774 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000927524831.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:01 Heat of formation + Delta-G solvation = -94.823374 kcal Electronic energy + Delta-G solvation = -22026.314615 eV Core-core repulsion = 18676.928601 eV Total energy + Delta-G solvation = -3349.386014 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.47 seconds Orbital eigenvalues (eV) -42.24499 -38.30028 -37.81870 -36.21657 -35.17441 -33.18544 -32.18799 -29.84055 -29.52866 -26.46966 -25.45372 -23.95079 -23.14065 -22.11926 -20.70360 -19.80599 -17.62030 -16.87982 -16.53871 -16.20845 -16.05348 -15.70496 -15.18861 -14.81176 -14.73821 -14.39146 -14.13349 -13.73362 -13.40517 -13.06621 -12.84470 -12.50267 -12.33794 -11.89541 -11.76021 -11.44956 -11.41858 -11.33453 -10.89466 -10.80250 -10.39795 -10.04910 -10.00732 -9.79457 -9.64824 -9.28584 -9.17271 -8.76010 -8.31613 -5.96404 -4.00140 2.02299 2.67125 3.31055 3.38150 3.41462 3.44520 3.51626 3.57442 4.11282 4.50133 4.56674 4.62279 4.92930 5.05680 5.12074 5.22325 5.29731 5.38745 5.39657 5.41655 5.57692 5.65077 5.75392 5.78164 6.00903 6.16277 6.24090 6.40129 6.75912 6.99978 7.06002 7.50377 7.68569 7.81670 7.84046 8.02051 8.36465 8.59093 9.05110 9.63082 11.15129 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.021516 B = 0.005762 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.030979 B = 4857.877992 C = 5361.529369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C -0.113 4.113 3 C 0.120 3.880 4 C 0.066 3.934 5 O -0.377 6.377 6 C 0.035 3.965 7 N -0.720 5.720 8 C 0.709 3.291 9 O -0.542 6.542 10 N -0.563 5.563 11 C 0.120 3.880 12 C 0.015 3.985 13 C -0.522 4.522 14 H 0.058 0.942 15 C 0.060 3.940 16 N -0.891 5.891 17 Si 0.897 3.103 18 H -0.276 1.276 19 H -0.287 1.287 20 H -0.276 1.276 21 C 0.539 3.461 22 O -0.470 6.470 23 H 0.065 0.935 24 H 0.055 0.945 25 H 0.063 0.937 26 H 0.083 0.917 27 H 0.089 0.911 28 H 0.072 0.928 29 H 0.066 0.934 30 H 0.091 0.909 31 H 0.043 0.957 32 H 0.040 0.960 33 H 0.433 0.567 34 H 0.084 0.916 35 H 0.081 0.919 36 H 0.022 0.978 37 H 0.024 0.976 38 H 0.261 0.739 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.640 -17.830 -8.824 20.068 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.151 4.151 3 C 0.029 3.971 4 C -0.012 4.012 5 O -0.295 6.295 6 C -0.061 4.061 7 N -0.384 5.384 8 C 0.410 3.590 9 O -0.415 6.415 10 N -0.307 5.307 11 C 0.001 3.999 12 C -0.023 4.023 13 C -0.561 4.561 14 H 0.076 0.924 15 C -0.142 4.142 16 N -0.530 5.530 17 Si 0.724 3.276 18 H -0.202 1.202 19 H -0.213 1.213 20 H -0.201 1.201 21 C 0.325 3.675 22 O -0.340 6.340 23 H 0.084 0.916 24 H 0.074 0.926 25 H 0.082 0.918 26 H 0.102 0.898 27 H 0.108 0.892 28 H 0.090 0.910 29 H 0.084 0.916 30 H 0.109 0.891 31 H 0.061 0.939 32 H 0.058 0.942 33 H 0.276 0.724 34 H 0.102 0.898 35 H 0.099 0.901 36 H 0.040 0.960 37 H 0.043 0.957 38 H 0.071 0.929 Dipole moment (debyes) X Y Z Total from point charges 2.413 -17.148 -8.389 19.242 hybrid contribution 0.095 0.527 0.136 0.553 sum 2.509 -16.621 -8.254 18.726 Atomic orbital electron populations 1.21784 0.94221 1.02451 1.02841 1.21666 0.97517 0.91649 1.04312 1.21572 0.93422 0.94337 0.87803 1.22629 0.91234 0.85610 1.01757 1.88049 1.23237 1.23850 1.94364 1.22766 0.80797 1.03292 0.99272 1.45417 1.53503 1.30723 1.08759 1.15819 0.79811 0.81603 0.81741 1.90986 1.43854 1.38716 1.67960 1.46600 1.47019 1.28826 1.08245 1.22184 0.98188 0.89477 0.90087 1.19374 0.94305 0.90838 0.97774 1.20984 1.03171 1.04710 1.27191 0.92365 1.24990 0.94861 0.98009 0.96344 1.69975 1.12447 1.26550 1.44005 0.86584 0.79081 0.80564 0.81333 1.20154 1.21278 1.20124 1.20325 0.77281 0.80310 0.89606 1.90755 1.54064 1.67887 1.21342 0.91561 0.92588 0.91792 0.89803 0.89214 0.90966 0.91563 0.89054 0.93862 0.94191 0.72380 0.89806 0.90076 0.95985 0.95737 0.92896 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.49 9.36 37.16 0.35 -1.14 16 2 C -0.11 -1.00 5.34 -26.73 -0.14 -1.14 16 3 C 0.12 1.53 0.93 -132.10 -0.12 1.41 16 4 C 0.07 0.76 5.22 37.16 0.19 0.95 16 5 O -0.38 -5.82 10.16 -35.23 -0.36 -6.17 16 6 C 0.04 0.41 11.01 101.05 1.11 1.52 16 7 N -0.72 -9.68 4.62 -52.94 -0.24 -9.92 16 8 C 0.71 13.42 8.51 -88.02 -0.75 12.67 16 9 O -0.54 -12.15 17.48 5.33 0.09 -12.06 16 10 N -0.56 -11.27 2.60 -120.73 -0.31 -11.59 16 11 C 0.12 2.72 5.64 -4.04 -0.02 2.70 16 12 C 0.01 0.41 5.30 -27.88 -0.15 0.27 16 13 C -0.52 -15.31 9.11 -34.44 -0.31 -15.62 16 14 H 0.06 1.62 7.74 -52.48 -0.41 1.21 16 15 C 0.06 1.77 5.46 -17.82 -0.10 1.68 16 16 N -0.89 -27.73 13.29 55.43 0.74 -26.99 16 17 Si 0.90 22.23 29.54 -169.99 -5.02 17.21 16 18 H -0.28 -6.68 7.11 56.52 0.40 -6.28 16 19 H -0.29 -7.02 7.11 56.52 0.40 -6.62 16 20 H -0.28 -6.70 7.11 56.52 0.40 -6.30 16 21 C 0.54 9.70 5.68 -10.55 -0.06 9.64 16 22 O -0.47 -9.55 17.76 5.60 0.10 -9.45 16 23 H 0.07 0.50 8.14 -51.93 -0.42 0.07 16 24 H 0.06 0.66 7.41 -51.93 -0.39 0.28 16 25 H 0.06 0.62 7.42 -51.93 -0.39 0.24 16 26 H 0.08 0.49 8.14 -51.93 -0.42 0.07 16 27 H 0.09 0.77 8.14 -51.93 -0.42 0.34 16 28 H 0.07 0.77 8.14 -51.93 -0.42 0.35 16 29 H 0.07 0.53 8.14 -51.93 -0.42 0.11 16 30 H 0.09 1.11 8.14 -51.93 -0.42 0.69 16 31 H 0.04 0.45 8.14 -51.93 -0.42 0.03 16 32 H 0.04 0.36 8.14 -51.93 -0.42 -0.07 16 33 H 0.43 4.44 8.96 -40.82 -0.37 4.07 16 34 H 0.08 1.87 7.86 -51.93 -0.41 1.46 16 35 H 0.08 1.76 8.00 -51.93 -0.42 1.35 16 36 H 0.02 0.66 8.14 -51.93 -0.42 0.24 16 37 H 0.02 0.74 8.14 -51.93 -0.42 0.32 16 38 H 0.26 7.64 8.31 -40.82 -0.34 7.31 16 LS Contribution 325.45 15.07 4.90 4.90 Total: -1.00 -36.41 325.45 -5.83 -42.25 By element: Atomic # 1 Polarization: 4.62 SS G_CDS: -5.73 Total: -1.11 kcal Atomic # 6 Polarization: 12.94 SS G_CDS: 0.00 Total: 12.94 kcal Atomic # 7 Polarization: -48.68 SS G_CDS: 0.18 Total: -48.50 kcal Atomic # 8 Polarization: -27.51 SS G_CDS: -0.17 Total: -27.68 kcal Atomic # 14 Polarization: 22.23 SS G_CDS: -5.02 Total: 17.21 kcal Total LS contribution 4.90 Total: 4.90 kcal Total: -36.41 -5.83 -42.25 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927524831.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -52.578 kcal (2) G-P(sol) polarization free energy of solvation -36.411 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -88.989 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -5.834 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.246 kcal (6) G-S(sol) free energy of system = (1) + (5) -94.823 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.47 seconds