Wall clock time and date at job start Mon Mar 30 2020 01:01:01 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.53002 * 109.46799 * 2 1 4 4 C 1.52998 * 110.65213 * 187.21309 * 3 2 1 5 5 O 1.42906 * 109.47201 * 177.78514 * 4 3 2 6 6 C 1.42899 * 113.99810 * 180.02562 * 5 4 3 7 7 N 1.47308 * 110.49977 * 310.18193 * 3 2 1 8 8 C 1.34523 * 106.61978 * 118.82402 * 7 3 2 9 9 O 1.21538 * 123.77372 * 179.76778 * 8 7 3 10 10 N 1.33795 * 112.45569 * 359.77017 * 8 7 3 11 11 C 1.46498 * 124.17860 * 179.97438 * 10 8 7 12 12 C 1.53003 * 109.47188 * 270.03934 * 11 10 8 13 13 C 1.50701 * 109.47376 * 179.97438 * 12 11 10 14 14 H 1.08004 * 119.99842 * 0.02562 * 13 12 11 15 15 C 1.37878 * 119.99938 * 179.97438 * 13 12 11 16 16 N 1.31510 * 120.00273 * 359.97438 * 15 13 12 17 17 Si 1.86799 * 119.99691 * 180.02562 * 15 13 12 18 18 H 1.48493 * 109.47609 * 59.99979 * 17 15 13 19 19 H 1.48500 * 109.47022 * 180.02562 * 17 15 13 20 20 H 1.48501 * 109.47328 * 299.99826 * 17 15 13 21 21 C 1.34773 * 111.64536 * 359.97438 * 10 8 7 22 22 O 1.21233 * 127.15617 * 179.97438 * 21 10 8 23 23 H 1.08997 * 109.46982 * 180.02562 * 1 2 3 24 24 H 1.09000 * 109.47082 * 300.00025 * 1 2 3 25 25 H 1.08994 * 109.47571 * 59.99771 * 1 2 3 26 26 H 1.09000 * 109.47082 * 239.99975 * 2 1 3 27 27 H 1.09001 * 109.47288 * 119.99623 * 2 1 3 28 28 H 1.09003 * 109.47417 * 297.79013 * 4 3 2 29 29 H 1.09005 * 109.47202 * 57.78578 * 4 3 2 30 30 H 1.09003 * 109.46448 * 180.02562 * 6 5 4 31 31 H 1.09001 * 109.47267 * 299.99459 * 6 5 4 32 32 H 1.08999 * 109.47619 * 60.00256 * 6 5 4 33 33 H 0.97003 * 126.69488 * 298.63273 * 7 3 2 34 34 H 1.08996 * 109.47229 * 30.03813 * 11 10 8 35 35 H 1.08997 * 109.47185 * 150.04300 * 11 10 8 36 36 H 1.09001 * 109.47377 * 300.00213 * 12 11 10 37 37 H 1.09002 * 109.47200 * 59.99948 * 12 11 10 38 38 H 0.96999 * 120.00245 * 179.97438 * 16 15 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 6 3.5589 1.4779 -0.1798 5 8 4.0014 2.8359 -0.2278 6 6 5.4131 2.9816 -0.3951 7 7 1.3725 2.2256 -1.0542 8 6 0.7111 3.2198 -0.4346 9 8 0.0528 4.0591 -1.0171 10 7 0.8590 3.1813 0.8946 11 6 0.2503 4.1415 1.8186 12 6 1.2049 5.3176 2.0339 13 6 0.5785 6.3057 2.9839 14 1 -0.4022 6.1138 3.3934 15 6 1.2579 7.4542 3.3310 16 7 2.4528 7.6871 2.8335 17 14 0.4817 8.6785 4.5090 18 1 0.2142 8.0131 5.8093 19 1 1.4082 9.8201 4.7180 20 1 -0.7947 9.1761 3.9359 21 6 1.6372 2.1501 1.2786 22 8 1.9539 1.8536 2.4106 23 1 -0.3633 -1.0276 0.0005 24 1 -0.3633 0.5138 0.8900 25 1 -0.3634 0.5138 -0.8899 26 1 1.8933 -0.5138 -0.8900 27 1 1.8934 -0.5138 0.8900 28 1 4.0360 0.9697 0.6583 29 1 3.8266 0.9755 -1.1093 30 1 5.6683 4.0410 -0.4213 31 1 5.9289 2.5046 0.4383 32 1 5.7189 2.5106 -1.3292 33 1 1.4059 2.0589 -2.0092 34 1 -0.6867 4.5065 1.3981 35 1 0.0544 3.6531 2.7731 36 1 2.1420 4.9527 2.4544 37 1 1.4009 5.8060 1.0794 38 1 2.9306 8.4953 3.0774 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000927524831.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:01:01 Heat of formation + Delta-G solvation = -122.885646 kcal Electronic energy + Delta-G solvation = -22027.531486 eV Core-core repulsion = 18676.928601 eV Total energy + Delta-G solvation = -3350.602885 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.54 seconds Orbital eigenvalues (eV) -43.62665 -39.74248 -39.00485 -37.47720 -36.86952 -35.17593 -33.45266 -31.78483 -30.49458 -27.59342 -27.26178 -25.25080 -24.15127 -24.00540 -22.09104 -21.28300 -19.10097 -18.63057 -17.93956 -17.62700 -17.21372 -16.99429 -16.55271 -16.38792 -16.20682 -16.02899 -15.31095 -14.97196 -14.84576 -14.59644 -14.39540 -13.99319 -13.63883 -13.35507 -12.86743 -12.82174 -12.71992 -12.53160 -12.34387 -12.23538 -12.11184 -12.05175 -11.81655 -11.44703 -11.11746 -10.72628 -10.69143 -10.62069 -10.38029 -8.25180 -6.39483 0.60826 1.24557 1.39489 1.44254 1.51937 2.04429 2.16921 2.39320 2.56739 2.87456 3.08095 3.62369 3.71523 3.99375 4.24602 4.27891 4.31315 4.38098 4.40105 4.45636 4.51090 4.54176 4.64419 4.71020 4.74689 4.84489 4.98712 5.07042 5.29262 5.34434 5.41382 5.70919 5.84506 6.06340 6.11525 6.16055 6.42219 6.74487 7.16094 7.30220 8.87621 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.021516 B = 0.005762 C = 0.005221 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1301.030979 B = 4857.877992 C = 5361.529369 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.105 4.105 3 C 0.131 3.869 4 C 0.060 3.940 5 O -0.425 6.425 6 C 0.032 3.968 7 N -0.689 5.689 8 C 0.703 3.297 9 O -0.586 6.586 10 N -0.577 5.577 11 C 0.133 3.867 12 C 0.031 3.969 13 C -0.548 4.548 14 H 0.071 0.929 15 C 0.000 4.000 16 N -0.932 5.932 17 Si 0.977 3.023 18 H -0.262 1.262 19 H -0.281 1.281 20 H -0.264 1.264 21 C 0.526 3.474 22 O -0.502 6.502 23 H 0.092 0.908 24 H 0.023 0.977 25 H 0.060 0.940 26 H 0.132 0.868 27 H 0.099 0.901 28 H 0.083 0.917 29 H 0.118 0.882 30 H 0.072 0.928 31 H 0.051 0.949 32 H 0.074 0.926 33 H 0.451 0.549 34 H 0.085 0.915 35 H 0.088 0.912 36 H -0.014 1.014 37 H -0.016 1.016 38 H 0.266 0.734 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 2.685 -19.846 -9.442 22.141 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.143 4.143 3 C 0.040 3.960 4 C -0.017 4.017 5 O -0.345 6.345 6 C -0.064 4.064 7 N -0.355 5.355 8 C 0.404 3.596 9 O -0.463 6.463 10 N -0.321 5.321 11 C 0.012 3.988 12 C -0.007 4.007 13 C -0.587 4.587 14 H 0.090 0.910 15 C -0.198 4.198 16 N -0.572 5.572 17 Si 0.800 3.200 18 H -0.187 1.187 19 H -0.206 1.206 20 H -0.189 1.189 21 C 0.315 3.685 22 O -0.374 6.374 23 H 0.111 0.889 24 H 0.042 0.958 25 H 0.079 0.921 26 H 0.151 0.849 27 H 0.117 0.883 28 H 0.101 0.899 29 H 0.136 0.864 30 H 0.091 0.909 31 H 0.070 0.930 32 H 0.093 0.907 33 H 0.299 0.701 34 H 0.103 0.897 35 H 0.107 0.893 36 H 0.005 0.995 37 H 0.003 0.997 38 H 0.074 0.926 Dipole moment (debyes) X Y Z Total from point charges 2.486 -19.239 -9.048 21.405 hybrid contribution 0.142 1.105 0.313 1.157 sum 2.628 -18.133 -8.735 20.299 Atomic orbital electron populations 1.21824 0.94943 1.03660 1.01109 1.21803 0.96765 0.88556 1.07134 1.21878 0.94716 0.95619 0.83763 1.22948 0.89425 0.84490 1.04805 1.87989 1.25197 1.26468 1.94858 1.22871 0.79356 1.02767 1.01407 1.45246 1.51599 1.28829 1.09805 1.15980 0.80016 0.82208 0.81360 1.90946 1.46051 1.40766 1.68561 1.46608 1.47730 1.29067 1.08673 1.21708 0.96928 0.88691 0.91431 1.19094 0.93940 0.92412 0.95233 1.21455 1.03957 1.05517 1.27726 0.91040 1.26092 0.95276 1.00276 0.98205 1.70133 1.14148 1.27408 1.45471 0.85330 0.78299 0.77505 0.78873 1.18678 1.20615 1.18867 1.21348 0.76080 0.79829 0.91239 1.90720 1.54861 1.68620 1.23159 0.88912 0.95774 0.92108 0.84949 0.88286 0.89938 0.86450 0.90885 0.93036 0.90735 0.70109 0.89678 0.89319 0.99536 0.99746 0.92579 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.62 9.36 71.98 0.67 -1.95 16 2 C -0.10 -1.44 5.34 30.60 0.16 -1.27 16 3 C 0.13 3.06 0.93 2.98 0.00 3.06 16 4 C 0.06 1.20 5.22 71.98 0.38 1.58 16 5 O -0.43 -12.78 10.16 -148.98 -1.51 -14.30 16 6 C 0.03 0.70 11.01 113.37 1.25 1.95 16 7 N -0.69 -17.47 4.62 -439.83 -2.03 -19.50 16 8 C 0.70 27.13 8.51 179.44 1.53 28.66 16 9 O -0.59 -27.22 17.48 -3.84 -0.07 -27.28 16 10 N -0.58 -23.95 2.60 -773.13 -2.01 -25.96 16 11 C 0.13 6.36 5.64 86.38 0.49 6.85 16 12 C 0.03 1.84 5.30 29.85 0.16 2.00 16 13 C -0.55 -33.20 9.11 25.60 0.23 -32.97 16 14 H 0.07 4.03 7.74 -2.91 -0.02 4.01 16 15 C 0.00 -0.01 5.46 84.66 0.46 0.45 16 16 N -0.93 -59.93 13.29 21.45 0.28 -59.64 16 17 Si 0.98 46.01 29.54 68.60 2.03 48.03 16 18 H -0.26 -11.71 7.11 99.48 0.71 -11.00 16 19 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 20 H -0.26 -11.88 7.11 99.48 0.71 -11.17 16 21 C 0.53 19.14 5.68 87.94 0.50 19.64 16 22 O -0.50 -20.82 17.76 -2.88 -0.05 -20.87 16 23 H 0.09 1.06 8.14 -2.39 -0.02 1.04 16 24 H 0.02 0.54 7.41 -2.39 -0.02 0.53 16 25 H 0.06 1.04 7.42 -2.39 -0.02 1.02 16 26 H 0.13 0.68 8.14 -2.39 -0.02 0.66 16 27 H 0.10 1.30 8.14 -2.39 -0.02 1.28 16 28 H 0.08 1.51 8.14 -2.39 -0.02 1.49 16 29 H 0.12 1.20 8.14 -2.38 -0.02 1.18 16 30 H 0.07 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.05 1.03 8.14 -2.39 -0.02 1.01 16 32 H 0.07 1.11 8.14 -2.39 -0.02 1.09 16 33 H 0.45 8.02 8.96 -92.71 -0.83 7.19 16 34 H 0.08 3.99 7.86 -2.39 -0.02 3.97 16 35 H 0.09 4.03 8.00 -2.39 -0.02 4.02 16 36 H -0.01 -0.89 8.14 -2.39 -0.02 -0.91 16 37 H -0.02 -1.05 8.14 -2.39 -0.02 -1.07 16 38 H 0.27 15.90 8.31 -92.71 -0.77 15.13 16 Total: -1.00 -85.10 325.45 2.69 -82.41 By element: Atomic # 1 Polarization: 8.89 SS G_CDS: 0.23 Total: 9.12 kcal Atomic # 6 Polarization: 22.16 SS G_CDS: 5.83 Total: 28.00 kcal Atomic # 7 Polarization: -101.35 SS G_CDS: -3.76 Total: -105.11 kcal Atomic # 8 Polarization: -60.82 SS G_CDS: -1.63 Total: -62.45 kcal Atomic # 14 Polarization: 46.01 SS G_CDS: 2.03 Total: 48.03 kcal Total: -85.10 2.69 -82.41 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927524831.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -40.478 kcal (2) G-P(sol) polarization free energy of solvation -85.101 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -125.578 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.692 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.408 kcal (6) G-S(sol) free energy of system = (1) + (5) -122.886 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.54 seconds