Wall clock time and date at job start Mon Mar 30 2020 01:10:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 O 1.42898 * 1 3 3 C 1.42891 * 114.00157 * 2 1 4 4 C 1.53000 * 109.47454 * 180.02562 * 3 2 1 5 5 H 1.09008 * 110.53480 * 303.63060 * 4 3 2 6 6 N 1.47313 * 110.59612 * 66.45311 * 4 3 2 7 7 C 1.34526 * 106.61528 * 118.68565 * 6 4 3 8 8 O 1.21543 * 123.77210 * 179.97438 * 7 6 4 9 9 N 1.33786 * 112.46195 * 0.02562 * 7 6 4 10 10 C 1.46503 * 124.18278 * 179.97438 * 9 7 6 11 11 C 1.52996 * 109.47323 * 90.01942 * 10 9 7 12 12 C 1.52996 * 109.47170 * 60.00308 * 11 10 9 13 13 C 1.53004 * 109.47189 * 300.00346 * 11 10 9 14 14 C 1.50703 * 109.47239 * 180.02562 * 11 10 9 15 15 H 1.07997 * 119.99854 * 4.65696 * 14 11 10 16 16 C 1.37873 * 119.99919 * 184.65239 * 14 11 10 17 17 N 1.31519 * 119.99314 * 152.43232 * 16 14 11 18 18 Si 1.86797 * 120.00486 * 332.16123 * 16 14 11 19 19 H 1.48496 * 109.47356 * 180.27071 * 18 16 14 20 20 H 1.48500 * 109.46865 * 300.27489 * 18 16 14 21 21 H 1.48509 * 109.46946 * 60.27284 * 18 16 14 22 22 C 1.34773 * 111.64308 * 0.22724 * 9 7 6 23 23 O 1.21235 * 127.15885 * 179.73738 * 22 9 7 24 24 H 1.08995 * 109.47392 * 59.99183 * 1 2 3 25 25 H 1.08999 * 109.47804 * 179.97438 * 1 2 3 26 26 H 1.09002 * 109.47105 * 299.99670 * 1 2 3 27 27 H 1.09008 * 109.47177 * 60.00240 * 3 2 1 28 28 H 1.09001 * 109.47798 * 300.00466 * 3 2 1 29 29 H 0.97001 * 126.69367 * 298.64552 * 6 4 3 30 30 H 1.09001 * 109.46573 * 330.01826 * 10 9 7 31 31 H 1.09001 * 109.47376 * 210.02264 * 10 9 7 32 32 H 1.08997 * 109.47504 * 172.23023 * 12 11 10 33 33 H 1.08996 * 109.47150 * 292.23007 * 12 11 10 34 34 H 1.09002 * 109.47277 * 52.23287 * 12 11 10 35 35 H 1.09002 * 109.46782 * 293.00108 * 13 11 10 36 36 H 1.08997 * 109.47027 * 53.00570 * 13 11 10 37 37 H 1.08998 * 109.46892 * 173.00370 * 13 11 10 38 38 H 0.96998 * 120.00782 * 354.58368 * 17 16 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 8 1.4290 0.0000 0.0000 3 6 2.0102 1.3054 0.0000 4 6 3.5354 1.1846 -0.0006 5 1 3.8723 0.5907 0.8491 6 7 4.0080 0.5947 -1.2651 7 6 4.7974 1.5152 -1.8476 8 8 5.3556 1.3489 -2.9144 9 7 4.9004 2.6338 -1.1209 10 6 5.6952 3.8002 -1.5136 11 6 4.8270 4.7562 -2.3340 12 6 3.6342 5.2122 -1.4913 13 6 4.3215 4.0382 -3.5870 14 6 5.6447 5.9557 -2.7384 15 1 6.6985 5.9943 -2.5053 16 6 5.0475 7.0038 -3.4061 17 7 5.5375 8.2192 -3.2942 18 14 3.5472 6.6964 -4.4757 19 1 3.1026 7.9758 -5.0843 20 1 3.8944 5.7315 -5.5497 21 1 2.4519 6.1374 -3.6430 22 6 4.1870 2.5530 0.0196 23 8 4.0859 3.3996 0.8816 24 1 -0.3634 0.5139 -0.8899 25 1 -0.3635 -1.0276 -0.0005 26 1 -0.3633 0.5138 0.8900 27 1 1.6886 1.8463 0.8901 28 1 1.6886 1.8464 -0.8899 29 1 3.7926 -0.2859 -1.6101 30 1 6.5450 3.4753 -2.1139 31 1 6.0553 4.3117 -0.6210 32 1 3.0930 5.9957 -2.0217 33 1 2.9693 4.3667 -1.3153 34 1 3.9905 5.5992 -0.5366 35 1 5.1622 3.8235 -4.2467 36 1 3.8368 3.1049 -3.3003 37 1 3.6053 4.6748 -4.1065 38 1 6.2693 8.3927 -2.6817 RHF calculation, no. of doubly occupied orbitals= 51 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000927722316.mol2 38 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Mon Mar 30 2020 01:10:44 Heat of formation + Delta-G solvation = -75.265534 kcal Electronic energy + Delta-G solvation = -22300.316807 eV Core-core repulsion = 18951.778884 eV Total energy + Delta-G solvation = -3348.537922 eV No. of doubly occupied orbitals = 51 Molecular weight (most abundant/longest-lived isotopes) = 270.141 amu Computer time = 0.57 seconds Orbital eigenvalues (eV) -42.30939 -38.43679 -38.19255 -36.58709 -35.83813 -33.66805 -31.56226 -29.97535 -27.16420 -26.44910 -26.24675 -24.50503 -23.99865 -22.13518 -20.81335 -18.92547 -17.73931 -17.40322 -16.86485 -16.54959 -16.42998 -15.86030 -15.28155 -15.08026 -14.90225 -14.49586 -13.97835 -13.88519 -13.10069 -12.94840 -12.78878 -12.55867 -12.32953 -11.98850 -11.77282 -11.68551 -11.12643 -10.98415 -10.65943 -10.17780 -10.13405 -10.02869 -9.96031 -9.84892 -9.54665 -9.35742 -8.97128 -8.69905 -8.12331 -6.50698 -4.07592 1.72234 2.44242 3.08111 3.28685 3.37458 3.45832 3.51056 3.65868 4.10692 4.49288 4.52343 4.64749 5.00923 5.05207 5.12839 5.15785 5.30607 5.35792 5.41005 5.87123 5.88610 5.96565 6.15704 6.43557 6.51890 6.59891 6.68160 6.68890 6.79092 6.89890 7.04842 7.25287 7.33242 7.53430 7.59521 8.10993 8.35449 8.37007 8.86001 9.55284 10.86179 Molecular weight = 270.14amu Principal moments of inertia in cm(-1) A = 0.023515 B = 0.006253 C = 0.005989 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1190.444683 B = 4477.110948 C = 4674.290849 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.032 3.968 2 O -0.388 6.388 3 C 0.064 3.936 4 C 0.095 3.905 5 H 0.130 0.870 6 N -0.725 5.725 7 C 0.699 3.301 8 O -0.534 6.534 9 N -0.565 5.565 10 C 0.139 3.861 11 C 0.031 3.969 12 C -0.136 4.136 13 C -0.141 4.141 14 C -0.605 4.605 15 H 0.061 0.939 16 C 0.047 3.953 17 N -0.889 5.889 18 Si 1.048 2.952 19 H -0.299 1.299 20 H -0.286 1.286 21 H -0.279 1.279 22 C 0.526 3.474 23 O -0.461 6.461 24 H 0.044 0.956 25 H 0.089 0.911 26 H 0.045 0.955 27 H 0.077 0.923 28 H 0.064 0.936 29 H 0.439 0.561 30 H 0.088 0.912 31 H 0.087 0.913 32 H 0.054 0.946 33 H 0.011 0.989 34 H 0.050 0.950 35 H 0.056 0.944 36 H 0.024 0.976 37 H 0.036 0.964 38 H 0.272 0.728 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.644 -16.365 7.734 20.058 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 O -0.307 6.307 3 C -0.014 4.014 4 C -0.015 4.015 5 H 0.147 0.853 6 N -0.391 5.391 7 C 0.400 3.600 8 O -0.407 6.407 9 N -0.310 5.310 10 C 0.020 3.980 11 C 0.030 3.970 12 C -0.193 4.193 13 C -0.198 4.198 14 C -0.642 4.642 15 H 0.079 0.921 16 C -0.161 4.161 17 N -0.521 5.521 18 Si 0.881 3.119 19 H -0.227 1.227 20 H -0.214 1.214 21 H -0.207 1.207 22 C 0.311 3.689 23 O -0.330 6.330 24 H 0.063 0.937 25 H 0.107 0.893 26 H 0.063 0.937 27 H 0.095 0.905 28 H 0.083 0.917 29 H 0.283 0.717 30 H 0.106 0.894 31 H 0.105 0.895 32 H 0.073 0.927 33 H 0.030 0.970 34 H 0.069 0.931 35 H 0.075 0.925 36 H 0.043 0.957 37 H 0.054 0.946 38 H 0.082 0.918 Dipole moment (debyes) X Y Z Total from point charges -9.226 -15.274 6.571 19.016 hybrid contribution 0.672 -1.006 0.888 1.500 sum -8.555 -16.280 7.458 19.846 Atomic orbital electron populations 1.22781 0.80131 1.02996 1.00500 1.87800 1.20412 1.26859 1.95603 1.22591 0.90399 0.85758 1.02693 1.21997 0.94879 0.94217 0.90404 0.85263 1.45527 1.52023 1.19063 1.22481 1.15946 0.80120 0.80312 0.83638 1.91016 1.50225 1.79558 1.19852 1.46619 1.46424 1.17426 1.20516 1.22071 0.93570 0.82000 1.00392 1.18784 0.93376 0.93656 0.91231 1.22197 0.97827 0.98789 1.00486 1.22306 1.00158 0.97473 0.99820 1.21587 0.96608 1.02067 1.43930 0.92075 1.25599 1.01770 0.91936 0.96764 1.70844 1.25013 1.20065 1.36177 0.84267 0.76649 0.73951 0.77060 1.22719 1.21400 1.20704 1.20395 0.78992 0.87754 0.81749 1.90810 1.59699 1.44069 1.38420 0.93706 0.89297 0.93678 0.90505 0.91730 0.71681 0.89364 0.89467 0.92690 0.96970 0.93091 0.92453 0.95715 0.94571 0.91844 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.03 0.23 11.01 101.05 1.11 1.34 16 2 O -0.39 -3.72 10.69 -35.23 -0.38 -4.09 16 3 C 0.06 0.66 5.68 37.16 0.21 0.87 16 4 C 0.09 1.08 3.96 -68.21 -0.27 0.81 16 5 H 0.13 1.14 8.14 -51.92 -0.42 0.72 16 6 N -0.73 -8.83 6.23 -59.19 -0.37 -9.20 16 7 C 0.70 11.68 6.99 -88.03 -0.62 11.06 16 8 O -0.53 -10.66 16.24 5.33 0.09 -10.58 16 9 N -0.56 -9.87 2.14 -120.73 -0.26 -10.13 16 10 C 0.14 2.84 4.67 -4.04 -0.02 2.82 16 11 C 0.03 0.74 0.57 -155.66 -0.09 0.65 16 12 C -0.14 -3.08 6.94 37.16 0.26 -2.82 16 13 C -0.14 -3.24 6.72 37.16 0.25 -2.99 16 14 C -0.60 -16.55 8.42 -34.44 -0.29 -16.84 16 15 H 0.06 1.77 7.99 -52.49 -0.42 1.35 16 16 C 0.05 1.33 5.07 -17.82 -0.09 1.24 16 17 N -0.89 -26.84 13.69 55.43 0.76 -26.08 16 18 Si 1.05 26.04 23.32 -169.99 -3.96 22.08 16 19 H -0.30 -7.52 7.11 56.52 0.40 -7.12 16 20 H -0.29 -6.88 6.77 56.52 0.38 -6.50 16 21 H -0.28 -6.47 5.66 56.52 0.32 -6.15 16 22 C 0.53 8.17 6.16 -10.55 -0.06 8.10 16 23 O -0.46 -8.17 16.79 5.60 0.09 -8.08 16 24 H 0.04 0.31 8.14 -51.93 -0.42 -0.11 16 25 H 0.09 0.48 8.14 -51.93 -0.42 0.06 16 26 H 0.04 0.28 8.14 -51.93 -0.42 -0.15 16 27 H 0.08 0.73 8.14 -51.92 -0.42 0.31 16 28 H 0.06 0.74 8.14 -51.93 -0.42 0.31 16 29 H 0.44 4.34 8.96 -40.82 -0.37 3.98 16 30 H 0.09 1.83 7.86 -51.93 -0.41 1.42 16 31 H 0.09 1.77 8.00 -51.93 -0.42 1.36 16 32 H 0.05 1.31 4.44 -51.93 -0.23 1.08 16 33 H 0.01 0.23 6.87 -51.93 -0.36 -0.12 16 34 H 0.05 1.17 7.84 -51.93 -0.41 0.76 16 35 H 0.06 1.36 8.13 -51.93 -0.42 0.94 16 36 H 0.02 0.52 5.57 -51.93 -0.29 0.23 16 37 H 0.04 0.84 2.84 -51.93 -0.15 0.70 16 38 H 0.27 8.10 8.73 -40.82 -0.36 7.74 16 LS Contribution 300.93 15.07 4.53 4.53 Total: -1.00 -32.14 300.93 -4.35 -36.49 By element: Atomic # 1 Polarization: 6.06 SS G_CDS: -5.25 Total: 0.81 kcal Atomic # 6 Polarization: 3.85 SS G_CDS: 0.39 Total: 4.24 kcal Atomic # 7 Polarization: -45.55 SS G_CDS: 0.13 Total: -45.42 kcal Atomic # 8 Polarization: -22.55 SS G_CDS: -0.20 Total: -22.75 kcal Atomic # 14 Polarization: 26.04 SS G_CDS: -3.96 Total: 22.08 kcal Total LS contribution 4.53 Total: 4.53 kcal Total: -32.14 -4.35 -36.49 kcal The number of atoms in the molecule is 38 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000927722316.mol2 38 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -38.773 kcal (2) G-P(sol) polarization free energy of solvation -32.141 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -70.914 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.352 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -36.493 kcal (6) G-S(sol) free energy of system = (1) + (5) -75.266 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.57 seconds